A population genetics pedigree perspective on the transmission of Helicobacter pylori

Genetics

Volumn 174, Issue 4, 2006, Pages 2107-2118

  Delport, Wayne ^a   Cunningham, Michael ^a   Olivier, Brenda ^a   Preisig, Oliver ^b   Van Der Merwe, Schalk W ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b Inqaba Biotec   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

CARCINOGEN;

ARTICLE; BACTERIAL TRANSMISSION; CONTROLLED STUDY; GENE MUTATION; GENE SEQUENCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; HELICOBACTER INFECTION; HELICOBACTER PYLORI; HUMAN; HUMAN TISSUE; INFECTION CONTROL; MAJOR CLINICAL STUDY; NUCLEOTIDE SEQUENCE; PEDIGREE ANALYSIS; PHYLOGENY; POPULATION GENETICS; PRIORITY JOURNAL;

DISEASE TRANSMISSION, HORIZONTAL; DNA, VIRAL; FEMALE; GENETICS, POPULATION; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; MALE; MOLECULAR SEQUENCE DATA; PEDIGREE;

HELICOBACTER PYLORI;

EID: 33845772198     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.057703     Document Type: Article

References (50)

1. ACHTMAN, M., T. AZUMA, D. E. BERG, Y. ITO, G. MORELLI et al., 1999 Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol. Microbiol. 32: 459-470.
2. ALM, R. A., L. S. LING, D. T. MOIR, B. L. KING, E. D. BROWN, et al., 1999 Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397: 176-180.
3. ALM, R. A., J. BINA, B. M. ANDREWS, P. DOIG, R. E. W. HANCOCK et al., 2000 Comparative genomics of Helicobacter pylori: analysis of the outer membrane protein families. Infect. Immun. 68: 4155-4168.
4. BAMFORD, K. B., J. BICKLEY and J. S. A. COLLINS, 1993 Helicobacter pylori: comparison of DNA fingerprints provides evidence for intrafamilial infection. Gut 34: 1348-1350.
5. BANATVALA, N., K. MAYO and F. MEGRAUD, 1993 The cohort effect and Helicobacter pylori. J. Infect. Dis. 168: 219-221.
6. BODE, G., F. MAUCH and P. MALTFERTHEINER, 1993 The coccoid forms of Helicobacter pylori. Criteria for their viability. Epidemiol. Infect. 111: 483-490.
7. BUNN, J. E. G., W. G. MACKAY, J. E. THOMAS, D. C. REID and L. T WEAVER, 2002 Detection of Helicobacter pylori DNA in drinking water biofilms: implications for transmission in early life. Lett. Appl. Microbiol. 34: 450-454.
8. COVACCI, A., J. L. TELFORD, G. DEL GIUDICE, J. PARSONNET and R. RAPPUOLI, 1999 Helicobacter pylori virulence and genetic geography. Science 284: 1328-1333.
9. DOWSETT, S. A., and M. J. KOWOLIK, 2003 Oral Helicobacter pylori: Can we stomach it? Crit. Rev. Oral Biol. Med. 14: 226-233.
10. DRUMM, B., C. I. PEREZ-PEREZ, M. J. BLASER and P. M. SHERMAN, 1990 Intrafamilial clustering of Helicobacter pylori infection. N. Engl. J. Med. 322: 359-363.
11. EVERHART, J. E., 2000 Recent developments in the epidemiology of Helicobacter pylori. Gastroenterol. Clin. North Am. 20: 559-578.
12. FALUSH, D., C. KRAFT, N. S. TAYLOR, P. CORREA, J. G. FOX et al., 2001 Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc. Natl. Acad. Sci. USA 98: 15056-15061.
13. FALUSH, D., T. WIRTH, B. LINZ, J. K. PRITCHARD, M. STEPHENS et al., 2003 Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
14. FRITZ, E. L., T. SLAVIK, W. DELPORT, B. OLIVIER and S. W. VAN DER MERWE, 2006 Incidence of Helicobacter felis and the effect of coinfection with Helicobacter pylori on the gastric mucosa in the African population. J. Clin. Microbiol 44: 1692-1696.
15. GOODMAN, K. J., and P CORREA, 1995 The transmission of Helicobacter pylori: a critical review of the evidence. Int. J. Epidemiol. 24: 875-877.
16. GOOSEN, C., J. THERON, M. NTASALA, F. F. MAREE, A. OLCKERS et al., 2002 Evaluation of a novel heminested PCR assay based on the phosphoglucosamine mutase gene for detection of Helicobacter pylori in saliva and dental plaque. J. Clin. Microbiol. 40: 205-209.
17. GRUBEL, P., L. HUANG, N. MASUBUCHI, F. J. STUTZENBERGER and D. R. CAVE, 1998 Detection of Helicobacter pylori DNA in houseflies (Musca domestica) on three continents. Lancet 352: 788-789.
18. HIGGINS, D. G., and P. M. SHARP, 1988 CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73: 237-244.
19. HOPKINS, R. J., P. A. VIAL, C. FERRECIO, J. OVALLE, P. PRADO et al., 1993 Seroprevalence of Helicobacter pylori in Chile: vegetables may serve as one route of transmission. J. Infect. Dis. 168: 222-226.
20. HUDSON, R. R., and N. L. KAPLAN, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
21. HULTEN, K., S. W. HAN, H. ENROTH, P. D. KLEIN, A. R. OPEKUN, et al., 1996 Helicobacter pylori in the drinking water in Peru. Gastroenterology 110: 1031-1035.
22. ISRAEL, D. A., N. SALAMA, U. KRISHNA, U. M. RIEGER, J. C. ATHERTON et al., 2001 Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc. Natl. Acad. Sci. USA 98: 14625-14630.
23. KAUL, S., and H. N. KAUL, 1992 Ladakh Through the Ages: Towards a New Identity. Nataraj Books, Springfield, VA.
24. KELLY, S. M., M. C. L. PITCHER, S. M. FARMERY and G. R. GIBSON, 1994 Isolation of Helicobacter pylori from feces of patients with dyspepsia in the United Kingdom. Gastroenterology 107: 1671-1674.
25. KLEIN, P. D., A. R. OPEKUN, E. O. SMITH, P. D. KLEIN, D. Y. GRAHAM et al., 1991 Water source as risk factor for Helicobacter pylori infection in Peruvian children. Lancet 337: 1503-1506.
26. KLEIN, P. D., R. H. GILMAN, R. LEON-BARUA, F. DIAZ, E. O. SMITH et al., 1994 The epidemiology of Helicobacter pylori in Peruvian children between 6 and 30 months of age. Am. J. Gastroenterol. 89: 2196-2200.
27. KRAFT, C., A. STACK, C. JOSENHANS, E. NIEHUS, G. DIETRICH et al., 2006 Genomic changes during chronic Helicobacter pylori infection. J. Bacteriol. 188: 249-254.
28. KUMAR, S., K. TAMURA and M. NEI, 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5: 150-163.
29. LUMAN, W., Y. ZHAO, H. S. NG and K. L. LING, 2002 Helicobacter pylori infection is unlikely to be transmitted between partners: evidence from genotypic study in partners of infected patients. Eur. J. Gastroenterol. Hepatol. 14: 521-528.
30. MIEHLKE, S., R. THOMAS, O. GUITERREZ, D. Y. GRAHAM and M. F. GO, 1999 DNA fingerprinting of single colonies of Helicobacter pylori from gastric cancer patients suggests infection with a single predominant strain. J. Clin. Microbiol. 37: 245-247.
31. NIH CONSENSUS DEVELOPMENT PANEL, 1994 Helicobacter pylori in peptic ulcer disease. J. Am. Med. Assoc. 272: 65-69.
32. OLIVIER, B. J., R. P. BOND, W. B. VAN ZYL, M. DELPORT, T. SLAVIK et al., 2006 Absence of Helicobacter pylori within the oral cavity of a South African community. J. Clin. Microbiol. 44: 635-636.
33. OSATO, M. S., K. AYUB, H-H. LE, R. REDDY and D. Y. GRAHAM, 1998 Houseflies are an unlikely reservoir or vector for Helicobacter pylori. J. Clin. Microbiol. 36: 2786-2788.
34. PARSONNET, J., M. J. BLASER, G. I. PEREZ-PEREZ, N. HARGRETT-BEAN and R. V. TAUXE, 1992 Symptoms and risk factors for Helicobacter pylori infection in a cohort of epidemiologists. Gastroenterology 102: 41-46.
35. PARSONNET, J., H. SHMUELY and B. S. HAGGERTY, 1999 Fecal and oral shedding of Helicobacter pylori from healthy infected adults. J. Am. Med. Assoc. 282: 2240-2245.
36. POSADA, D., and K. A. CRANDALL, 1998 MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
37. PREWETT, E. J., J. BICKLEY, R. J. OWEN and R. E. POUNDER, 1992 DNA patterns of Helicobacter pylori isolated from gastric antrum, body and duodenum. Gastroenterology 102: 829-833.
38. RAYMOND, J., J.-M. THIBERG, C. CHEVALIER, N. KALACH, M. BERGERET et al., 2004 Genetic and transmission analysis of Helicobacter pylori strains within a family. Emerg. Infect. Dis. 10: 1816-1821.
39. 2 and the problem of small samples. Mol. Biol. Evol. 6: 539-545.
40. ROTHENBACHER, D., G. BODE, G. BERG, U. KNAYER, T. GONSER et al., 1999 Helicobacter pylori among preschool children and their parents: evidence of parent-child transmission. J. Infect. Dis. 179: 398-402.
41. ROWLAND, M., L. DALY, M. VAUGHAN, A. HIGGINS, B. BOURKE et al., 2006 Age-specific incidence of Helicobacter pylori. Gastroenterology 130: 65-72.
42. ROZAS, J., and R. ROZAS, 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
43. SAMIR, K. S., B. MARTIN, B. D. GOLD, Q. SONG, M. SARGENT et al., 2004 The incidence of Helicobacter pylori acquisition in children of a Canadian First Nations community and the potential for parent-to-child transmission. Helicobacter 9: 59-68.
44. SRINIVAS, S., 1998 The Mouths of People, the Voice of God. Oxford University Press, New York.
45. SUERBAUM, S., and P. MICHETTI, 2002 Helicobacter pylori infection. N. Eng. J. Med. 347: 1175-1186.
46. SWOFFORD, D. L., 1999 PAUP*. Phylogenetic Analysis Using Parsimony, Version 4.0. Sinauer Associates, Sunderland, MA.
47. THOMAS, J. E., G. R. GIBSON, M. K. DARBOE, A. DALE and A. T. WEAVER, 1992 Isolation of Helicobacter pylori from human faeces. Lancet 340: 1194-1195.
48. TINDBERG, Y., C. BENGTSSON, F. GRANATH, M. BLENNOW, O. NYRÉN et al., 2001 Helicobacter pylori infection in Swedish school children: lack of evidence of child-to-child transmission outside the family. Gastroenterology 121: 310-316.
49. WANG, J. T., J. C. SHEU, J. T. LIN, T. H. WANG and M. S. WU, 1993 Direct DNA amplification and restriction pattern analysis of Helicobacter pylori in patients with duodenal ulcer and their families. J. Infect. Dis. 168: 1544-1548.
50. WIRTH, T., X. WANG, B. LINZ, R. P. NOVICK, J. K. LUM, et al., 2004 Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh. Proc. Natl. Acad. Sci. USA 101: 4746-4751.