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Volumn 12, Issue 1, 2007, Pages 22-28

Proteomics analysis in lung cancer: Challenges and opportunities

Author keywords

Fingerprint; Lung tumour; Proteomics

Indexed keywords

BIOLOGICAL MARKER; DNA;

EID: 33845720356     PISSN: 13237799     EISSN: 14401843     Source Type: Journal    
DOI: 10.1111/j.1440-1843.2006.00957.x     Document Type: Review
Times cited : (56)

References (45)
  • 1
    • 26944473246 scopus 로고    scopus 로고
    • Annual report to the nation on the status of cancer, 1975-2002, featuring population-based trends in cancer treatment
    • Edwards BK, Brown ML, Wingo PA et al. Annual report to the nation on the status of cancer, 1975-2002, featuring population-based trends in cancer treatment. J. Natl. Cancer Inst. 2005; 97: 1407-27.
    • (2005) J. Natl. Cancer Inst. , vol.97 , pp. 1407-1427
    • Edwards, B.K.1    Brown, M.L.2    Wingo, P.A.3
  • 2
    • 0038413465 scopus 로고    scopus 로고
    • based on November 2005 SEER data submission, posted to the SEER web site, 2006 edition. National Cancer Institute, Bethesda, MD
    • Ries L, Harkins D, Krapcho M et al. SEER Cancer Statistics Review, 1975-2003, based on November 2005 SEER data submission, posted to the SEER web site, 2006 edition. National Cancer Institute, Bethesda, MD, 2003.
    • (2003) SEER Cancer Statistics Review, 1975-2003
    • Ries, L.1    Harkins, D.2    Krapcho, M.3
  • 3
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub TR, Slonim DK, Tamayo P et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286: 531-7.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3
  • 5
    • 18544365698 scopus 로고    scopus 로고
    • Gene-expression profiles predict survival of patients with lung adenocarcinoma
    • Beer DG, Kardia SL, Huang CC et al. Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat. Med. 2002; 8: 816-24.
    • (2002) Nat. Med. , vol.8 , pp. 816-824
    • Beer, D.G.1    Kardia, S.L.2    Huang, C.C.3
  • 6
    • 0035923521 scopus 로고    scopus 로고
    • Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
    • Bhattacharjee A, Richards WG, Staunton J et al. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc. Natl. Acad. Sci. USA 2001; 98: 13790-5.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 13790-13795
    • Bhattacharjee, A.1    Richards, W.G.2    Staunton, J.3
  • 7
    • 0016168626 scopus 로고
    • Two-dimensional acrylamide gel electrophoresis of cancer-patient serum proteins
    • Wright GL Jr. Two-dimensional acrylamide gel electrophoresis of cancer-patient serum proteins. Ann. Clin. Lab. Sci. 1974; 4: 281-93.
    • (1974) Ann. Clin. Lab. Sci. , vol.4 , pp. 281-293
    • Wright Jr., G.L.1
  • 8
    • 0028876996 scopus 로고
    • Detection of polypeptides associated with the histopathological differentiation of primary lung carcinoma
    • Hirano T, Franzen B, Uryu K et al. Detection of polypeptides associated with the histopathological differentiation of primary lung carcinoma. Br. J. Cancer 1995; 72: 840-8,.
    • (1995) Br. J. Cancer , vol.72 , pp. 840-848
    • Hirano, T.1    Franzen, B.2    Uryu, K.3
  • 9
    • 0033994455 scopus 로고    scopus 로고
    • Identification of gel-separated tumor marker proteins by mass spectrometry
    • Bergman AC, Benjamin T, Alaiya A et al. Identification of gel-separated tumor marker proteins by mass spectrometry. Electrophoresis 2000; 21: 679-86.
    • (2000) Electrophoresis , vol.21 , pp. 679-686
    • Bergman, A.C.1    Benjamin, T.2    Alaiya, A.3
  • 10
    • 0040746269 scopus 로고    scopus 로고
    • A database of protein expression in lung cancer
    • Oh JM, Brichory F, Puravs E et al. A database of protein expression in lung cancer. Proteomics 2001; 1: 1303-19.
    • (2001) Proteomics , vol.1 , pp. 1303-1319
    • Oh, J.M.1    Brichory, F.2    Puravs, E.3
  • 11
    • 0035992398 scopus 로고    scopus 로고
    • Proteomic analysis of lung adenocarcinoma: Identification of a highly expressed set of proteins in tumors
    • Chen G, Gharib TG, Huang CC et al. Proteomic analysis of lung adenocarcinoma: identification of a highly expressed set of proteins in tumors. Clin. Cancer Res. 2002; 8: 2298-305.
    • (2002) Clin. Cancer Res. , vol.8 , pp. 2298-2305
    • Chen, G.1    Gharib, T.G.2    Huang, C.C.3
  • 12
    • 0036708511 scopus 로고    scopus 로고
    • Proteomic analysis of cytokeratin isoforms uncovers association with survival in lung adenocarcinoma
    • Gharib TG, Chen G, Wang H et al. Proteomic analysis of cytokeratin isoforms uncovers association with survival in lung adenocarcinoma. Neoplasia 2002; 4: 440-8.
    • (2002) Neoplasia , vol.4 , pp. 440-448
    • Gharib, T.G.1    Chen, G.2    Wang, H.3
  • 13
    • 0345686721 scopus 로고    scopus 로고
    • Protein profiles associated with survival in lung adenocarcinoma
    • Chen G, Gharib TG, Wang H et al. Protein profiles associated with survival in lung adenocarcinoma. Proc. Natl. Acad. Sci. USA 2003; 100: 13537-42.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13537-13542
    • Chen, G.1    Gharib, T.G.2    Wang, H.3
  • 14
    • 23944492134 scopus 로고    scopus 로고
    • Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
    • Omenn GS, States DJ, Adamski M et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 2005; 5: 3226-45.
    • (2005) Proteomics , vol.5 , pp. 3226-3245
    • Omenn, G.S.1    States, D.J.2    Adamski, M.3
  • 15
    • 33749037438 scopus 로고    scopus 로고
    • Selective profiling of proteins in lung cancer cells from fine needle aspirates by MALDI-TOF mass spectrometry
    • Amann JM, Chaurand P, Gonzalez AL et al. Selective profiling of proteins in lung cancer cells from fine needle aspirates by MALDI-TOF mass spectrometry. Clin. Cancer Res. 2006; 12: 5142-50.
    • (2006) Clin. Cancer Res. , vol.12 , pp. 5142-5150
    • Amann, J.M.1    Chaurand, P.2    Gonzalez, A.L.3
  • 16
    • 0035048372 scopus 로고    scopus 로고
    • Imaging mass spectrometry: A new technology for the analysis of protein expression in mammalian tissues
    • Stoeckli M, Chaurand P, Hallahan DE, Caprioli RM. Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues. Nat Med. 2001; 7: 493-6.
    • (2001) Nat Med. , vol.7 , pp. 493-496
    • Stoeckli, M.1    Chaurand, P.2    Hallahan, D.E.3    Caprioli, R.M.4
  • 17
    • 28344438939 scopus 로고    scopus 로고
    • Deciphering protein molecular signatures in cancer tissues to aid in diagnosis, prognosis, and therapy
    • Caprioli RM. Deciphering protein molecular signatures in cancer tissues to aid in diagnosis, prognosis, and therapy. Cancer Res. 2005; 65: 10642-5.
    • (2005) Cancer Res. , vol.65 , pp. 10642-10645
    • Caprioli, R.M.1
  • 18
    • 4644326645 scopus 로고    scopus 로고
    • Proteomics in diagnostic pathology: Profiling and imaging proteins directly in tissue sections
    • Chaurand P, Sanders ME, Jensen RA, Caprioli RM. Proteomics in diagnostic pathology: profiling and imaging proteins directly in tissue sections. Am. J. Pathol. 2004; 165: 1057-68.
    • (2004) Am. J. Pathol. , vol.165 , pp. 1057-1068
    • Chaurand, P.1    Sanders, M.E.2    Jensen, R.A.3    Caprioli, R.M.4
  • 19
    • 0041735992 scopus 로고    scopus 로고
    • Proteomic patterns of tumour subsets in non-small-cell lung cancer
    • Yanagisawa K, Shyr Y, Xu BJ et al. Proteomic patterns of tumour subsets in non-small-cell lung cancer. Lancet 2003; 362: 433-9.
    • (2003) Lancet , vol.362 , pp. 433-439
    • Yanagisawa, K.1    Shyr, Y.2    Xu, B.J.3
  • 22
    • 0036645099 scopus 로고    scopus 로고
    • Serum protein finger-printing coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
    • Adam BL, Qu Y, Davis JW et al. Serum protein finger-printing coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men. Cancer Res. 2002; 62: 3609-14.
    • (2002) Cancer Res. , vol.62 , pp. 3609-3614
    • Adam, B.L.1    Qu, Y.2    Davis, J.W.3
  • 23
    • 12444337492 scopus 로고    scopus 로고
    • A prototype methodology combining surface-enhanced laser desorption/ionization protein chip technology and artificial neural network algorithms to predict the chemoresponsiveness of breast cancer cell lines exposed to Paclitaxel and Doxorubicin under in vitro conditions
    • Mian S, Ball G, Hornbuckle J et al. A prototype methodology combining surface-enhanced laser desorption/ionization protein chip technology and artificial neural network algorithms to predict the chemoresponsiveness of breast cancer cell lines exposed to Paclitaxel and Doxorubicin under in vitro conditions. Proteomics 2003; 3: 1725-37.
    • (2003) Proteomics , vol.3 , pp. 1725-1737
    • Mian, S.1    Ball, G.2    Hornbuckle, J.3
  • 24
    • 26844465463 scopus 로고    scopus 로고
    • Application of serum SELDI proteomic patterns in diagnosis of lung cancer
    • Yang SY, Xiao XY, Zhang WG et al. Application of serum SELDI proteomic patterns in diagnosis of lung cancer. BMC Cancer 2005; 5: 83.
    • (2005) BMC Cancer , vol.5 , pp. 83
    • Yang, S.Y.1    Xiao, X.Y.2    Zhang, W.G.3
  • 25
    • 0037683738 scopus 로고    scopus 로고
    • Discovery of distinct protein profiles specific for lung tumors and pre-malignant lung lesions by SELDI mass spectrometry
    • Zhukov TA, Johanson RA, Cantor AB, Clark RA, Tockman MS. Discovery of distinct protein profiles specific for lung tumors and pre-malignant lung lesions by SELDI mass spectrometry. Lung Cancer 2003; 40: 267-79.
    • (2003) Lung Cancer , vol.40 , pp. 267-279
    • Zhukov, T.A.1    Johanson, R.A.2    Cantor, A.B.3    Clark, R.A.4    Tockman, M.S.5
  • 26
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter JC, Adams MD, Myers EW et al. The sequence of the human genome. Science 2001; 291: 1304-51.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1    Adams, M.D.2    Myers, E.W.3
  • 27
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001; 19: 242-7.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 28
    • 31644438577 scopus 로고    scopus 로고
    • Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT)
    • Chen EI, Hewel J, Felding-Habermann B, Yates JR 3rd. Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT). Mol. Cell Proteomics 2006; 5: 53-6.
    • (2006) Mol. Cell Proteomics , vol.5 , pp. 53-56
    • Chen, E.I.1    Hewel, J.2    Felding-Habermann, B.3    Yates III, J.R.4
  • 29
    • 24044520992 scopus 로고    scopus 로고
    • A streamlined platform for high-content functional proteomics of primary human specimens
    • Jessani N, Niessen S, Wei BQ et al. A streamlined platform for high-content functional proteomics of primary human specimens. Nat. Methods 2005; 2: 691-7.
    • (2005) Nat. Methods , vol.2 , pp. 691-697
    • Jessani, N.1    Niessen, S.2    Wei, B.Q.3
  • 30
    • 33645993265 scopus 로고    scopus 로고
    • Global survey of organ and organelle protein expression in mouse: Combined proteomic and transcriptomic profiling
    • Kislinger T, Cox B, Kannan A et al. Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell 2006; 125: 173-86.
    • (2006) Cell , vol.125 , pp. 173-186
    • Kislinger, T.1    Cox, B.2    Kannan, A.3
  • 31
    • 21744435256 scopus 로고    scopus 로고
    • Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: A strategy for identification of novel cancer markers
    • Mauri P, Scarpa A, Nascimbeni AC et al. Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: a strategy for identification of novel cancer markers. FASEB J. 2005; 19: 1125-7.
    • (2005) FASEB J. , vol.19 , pp. 1125-1127
    • Mauri, P.1    Scarpa, A.2    Nascimbeni, A.C.3
  • 32
    • 23944498611 scopus 로고    scopus 로고
    • Proteomic profiling of human pleural effusion using two-dimensional nano liquid chromatography tandem mass spectrometry
    • Tyan YC, Wu HY, Lai WW, Su WC, Liao PC. Proteomic profiling of human pleural effusion using two-dimensional nano liquid chromatography tandem mass spectrometry. J. Proteome Res. 2005; 4: 1274-86.
    • (2005) J. Proteome Res. , vol.4 , pp. 1274-1286
    • Tyan, Y.C.1    Wu, H.Y.2    Lai, W.W.3    Su, W.C.4    Liao, P.C.5
  • 33
    • 0035221240 scopus 로고    scopus 로고
    • Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
    • Haab BB, Dunham MJ, Brown PO. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2001, 2: R4.
    • (2001) Genome Biol. , vol.2
    • Haab, B.B.1    Dunham, M.J.2    Brown, P.O.3
  • 34
    • 0037250740 scopus 로고    scopus 로고
    • Antibody microarray profiling of human prostate cancer sera: Antibody screening and identification of potential biomarkers
    • Miller JC, Zhou H, Kwekel J et al. Antibody microarray profiling of human prostate cancer sera: antibody screening and identification of potential biomarkers. Proteomics 2003; 3: 56-63.
    • (2003) Proteomics , vol.3 , pp. 56-63
    • Miller, J.C.1    Zhou, H.2    Kwekel, J.3
  • 36
    • 23844456591 scopus 로고    scopus 로고
    • Proteomic analysis of apoptotic pathways reveals prognostic factors in follicular lymphoma
    • Gulmann C, Espina V, Petricoin E 3rd et al. Proteomic analysis of apoptotic pathways reveals prognostic factors in follicular lymphoma. Clin. Cancer Res. 2005; 11: 5847-55.
    • (2005) Clin. Cancer Res. , vol.11 , pp. 5847-5855
    • Gulmann, C.1    Espina, V.2    Petricoin III, E.3
  • 38
    • 0037022657 scopus 로고    scopus 로고
    • Proteome-scale purification of human proteins from bacteria
    • Braun P, Hu Y, Shen B et al. Proteome-scale purification of human proteins from bacteria. Proc. Natl. Acad. Sci. USA 2002; 99: 2654-9.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 2654-2659
    • Braun, P.1    Hu, Y.2    Shen, B.3
  • 40
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 2004; 431: 931-45.
    • (2004) Nature , vol.431 , pp. 931-945
  • 41
    • 0036315870 scopus 로고    scopus 로고
    • 'Top down' protein characterization via tandem mass spectrometry
    • Reid GE, McLuckey SA. 'Top down' protein characterization via tandem mass spectrometry. J. Mass Spectrom. 2002; 37: 663-75.
    • (2002) J. Mass Spectrom. , vol.37 , pp. 663-675
    • Reid, G.E.1    McLuckey, S.A.2
  • 42
    • 33645526350 scopus 로고    scopus 로고
    • Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry
    • Frahm JL, Howard BE, Heber S, Muddiman DC. Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry. J. Mass Spectrom. 2006; 41: 281-8.
    • (2006) J. Mass Spectrom. , vol.41 , pp. 281-288
    • Frahm, J.L.1    Howard, B.E.2    Heber, S.3    Muddiman, D.C.4
  • 44
    • 30344476702 scopus 로고    scopus 로고
    • An analysis of protein abundance suppression in data dependent liquid chromatography and tandem mass spectrometry with tryptic peptide mixtures of five known proteins
    • Sun W, Wu S, Wang X, Zheng D, Gao Y. An analysis of protein abundance suppression in data dependent liquid chromatography and tandem mass spectrometry with tryptic peptide mixtures of five known proteins. Eur. J. Mass Spectrom. (Chichester, Eng) 2005; 11: 575-80.
    • (2005) Eur. J. Mass Spectrom. (Chichester, Eng) , vol.11 , pp. 575-580
    • Sun, W.1    Wu, S.2    Wang, X.3    Zheng, D.4    Gao, Y.5
  • 45
    • 23944524368 scopus 로고    scopus 로고
    • Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
    • Echan LA, Tang HY, Ali-Khan N, Lee K, Speicher DW. Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma. Proteomics 2005; 5: 3292-303.
    • (2005) Proteomics , vol.5 , pp. 3292-3303
    • Echan, L.A.1    Tang, H.Y.2    Ali-Khan, N.3    Lee, K.4    Speicher, D.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.