-
1
-
-
33745618670
-
Evolution of four gene families with patchy phylogenetic distributions: Influx of genes into protist genomes
-
Andersson, J. O., R. P. Hirt, P. G. Foster, and A. J. Roger. 2006. Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. BMC. Evol. Biol. 6:27.
-
(2006)
BMC. Evol. Biol.
, vol.6
, pp. 27
-
-
Andersson, J.O.1
Hirt, R.P.2
Foster, P.G.3
Roger, A.J.4
-
2
-
-
0038050537
-
Genetic manipulation of glycine decarboxylation
-
Bauwe, H., and U. Kolukisaoglu. 2003. Genetic manipulation of glycine decarboxylation. J. Exp. Bot. 54:1523-1535.
-
(2003)
J. Exp. Bot.
, vol.54
, pp. 1523-1535
-
-
Bauwe, H.1
Kolukisaoglu, U.2
-
3
-
-
14544284067
-
An anaerobic mitochondrion that produces hydrogen
-
Boxma, B., R. M. de Graaf, G. W. van der Staay, T. A. van Alen, G. Ricard, T. Gabaldon, A. H. van Hoek, S. Y. Moon-van der Staay, W. J. Koopman, J. J. van Hellemond, A. G. Tielens, T. Friedrich, M. Veenhuis, M. A. Huynen, and J. H. Hackstein. 2005. An anaerobic mitochondrion that produces hydrogen. Nature 434:74-79.
-
(2005)
Nature
, vol.434
, pp. 74-79
-
-
Boxma, B.1
De Graaf, R.M.2
Van Der Staay, G.W.3
Van Alen, T.A.4
Ricard, G.5
Gabaldon, T.6
Van Hoek, A.H.7
Moon-Van Der Staay, S.Y.8
Koopman, W.J.9
Van Hellemond, J.J.10
Tielens, A.G.11
Friedrich, T.12
Veenhuis, M.13
Huynen, M.A.14
Hackstein, J.H.15
-
4
-
-
0031010331
-
Targeting and translocation of proteins into the hydrogenosome of the protist Trichomonas: Similarities with mitochondrial protein import
-
Bradley, P. J., C. J. Lahti, E. Plumper, and P. J. Johnson. 1997. Targeting and translocation of proteins into the hydrogenosome of the protist Trichomonas: similarities with mitochondrial protein import. EMBO J. 16:3484-3493.
-
(1997)
EMBO J.
, vol.16
, pp. 3484-3493
-
-
Bradley, P.J.1
Lahti, C.J.2
Plumper, E.3
Johnson, P.J.4
-
5
-
-
0029817685
-
A common evolutionary origin for mitochondria and hydrogenosomes
-
Bui, E. T., P. J. Bradley, and P. J. Johnson. 1996. A common evolutionary origin for mitochondria and hydrogenosomes. Proc. Natl. Acad. Sci. USA 93:9651-9656.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9651-9656
-
-
Bui, E.T.1
Bradley, P.J.2
Johnson, P.J.3
-
6
-
-
0034490157
-
Glycine cleavage enzyme complex: Rabbit H-protein cDNA sequence analysis and comparison to human, cow, and chicken
-
Choy, F., L. Sharp, and D. A. Applegarth. 2000. Glycine cleavage enzyme complex: rabbit H-protein cDNA sequence analysis and comparison to human, cow, and chicken. Biochem. Cell Biol. 78:725-730.
-
(2000)
Biochem. Cell Biol.
, vol.78
, pp. 725-730
-
-
Choy, F.1
Sharp, L.2
Applegarth, D.A.3
-
7
-
-
0030895287
-
Transient and selectable transformation of the parasitic protist Trichomonas vaginalis
-
Delgadillo, M. G., D. R. Liston, K. Niazi, and P. J. Johnson. 1997. Transient and selectable transformation of the parasitic protist Trichomonas vaginalis. Proc. Natl. Acad. Sci. USA 94:4716-4720.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 4716-4720
-
-
Delgadillo, M.G.1
Liston, D.R.2
Niazi, K.3
Johnson, P.J.4
-
8
-
-
0028344016
-
The glycine decarboxylase system in higher plant mitochondria: Structure, function and biogenesis
-
Douce, R., J. Bourguignon, D. Macherel, and M. Neuburger. 1994. The glycine decarboxylase system in higher plant mitochondria: structure, function and biogenesis. Biochem. Soc. Trans. 22:184-188.
-
(1994)
Biochem. Soc. Trans.
, vol.22
, pp. 184-188
-
-
Douce, R.1
Bourguignon, J.2
Macherel, D.3
Neuburger, M.4
-
9
-
-
0035212268
-
The glycine decarboxylase system: A fascinating complex
-
Douce, R., J. Bourguignon, M. Neuburger, and F. Rebeille. 2001. The glycine decarboxylase system: a fascinating complex. Trends Plant Sci. 6:167-176.
-
(2001)
Trends Plant Sci.
, vol.6
, pp. 167-176
-
-
Douce, R.1
Bourguignon, J.2
Neuburger, M.3
Rebeille, F.4
-
10
-
-
0034808050
-
Tissue-specific and developmental-specific expression of an Arabidopsis thaliana gene encoding the lipoamide dehydrogenase component of the plastid pyruvate dehydrogenase complex
-
Drea, S. C., R. M. Mould, J. M. Hibberd, J. C. Gray, and T. A. Kavanagh. 2001. Tissue-specific and developmental-specific expression of an Arabidopsis thaliana gene encoding the lipoamide dehydrogenase component of the plastid pyruvate dehydrogenase complex. Plant Mol. Biol. 46:705-715.
-
(2001)
Plant Mol. Biol.
, vol.46
, pp. 705-715
-
-
Drea, S.C.1
Mould, R.M.2
Hibberd, J.M.3
Gray, J.C.4
Kavanagh, T.A.5
-
11
-
-
1842429937
-
Ancient invasions: From endosymbionts to organelles
-
Dyall, S. D., M. T. Brown, and P. J. Johnson. 2004. Ancient invasions: from endosymbionts to organelles. Science 304:253-257.
-
(2004)
Science
, vol.304
, pp. 253-257
-
-
Dyall, S.D.1
Brown, M.T.2
Johnson, P.J.3
-
12
-
-
0034023895
-
Presence of a member of the mitochondrial carrier family in hydrogenosomes: Conservation of membrane-targeting pathways between hydrogenosomes and mitochondria
-
Dyall, S. D., C. M. Koehler, M. G. Delgadillo-Correa, P. J. Bradley, E. Plumper, D. Leuenberger, C. W. Turck, and P. J. Johnson. 2000. Presence of a member of the mitochondrial carrier family in hydrogenosomes: conservation of membrane-targeting pathways between hydrogenosomes and mitochondria. Mol. Cell. Biol. 20:2488-2497.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 2488-2497
-
-
Dyall, S.D.1
Koehler, C.M.2
Delgadillo-Correa, M.G.3
Bradley, P.J.4
Plumper, E.5
Leuenberger, D.6
Turck, C.W.7
Johnson, P.J.8
-
13
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R. C. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113-131.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113-131
-
-
Edgar, R.C.1
-
14
-
-
33645456207
-
Eukaryotic evolution, changes and challenges
-
Embley, T. M., and W. Martin. 2006. Eukaryotic evolution, changes and challenges. Nature 440:623-630.
-
(2006)
Nature
, vol.440
, pp. 623-630
-
-
Embley, T.M.1
Martin, W.2
-
15
-
-
0034113956
-
Interaction between the lipoamide-containing H-protein and the lipoamide dehydrogenase (L-protein) of the glycine decarboxylase multienzyme system 2. Crystal structures of H- and L-proteins
-
Faure, M., J. Bourguignon, M. Neuburger, D. MacHerel, L. Sieker, R. Ober, R. Kahn, C. Cohen-Addad, and R. Douce. 2000. Interaction between the lipoamide-containing H-protein and the lipoamide dehydrogenase (L-protein) of the glycine decarboxylase multienzyme system 2. Crystal structures of H- and L-proteins. Eur. J. Biochem. 267:2890-2898.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 2890-2898
-
-
Faure, M.1
Bourguignon, J.2
Neuburger, M.3
MacHerel, D.4
Sieker, L.5
Ober, R.6
Kahn, R.7
Cohen-Addad, C.8
Douce, R.9
-
16
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Finn, R. D., J. Mistry, B. Schuster-Bockler, S. Griffiths-Jones, V. Hollich, T. Lassmann, S. Moxon, M. Marshall, A. Khanna, R. Durbin, S. R. Eddy, E. L. Sonnhammer, and A. Bateman. 2006. Pfam: clans, web tools and services. Nucleic Acids Res. 34:D247-D251.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
17
-
-
14544269861
-
Evolutionary biology: The hydrogenosome's murky past
-
Gray, M. W. 2005. Evolutionary biology: the hydrogenosome's murky past. Nature 434:29-31.
-
(2005)
Nature
, vol.434
, pp. 29-31
-
-
Gray, M.W.1
-
18
-
-
0033525788
-
Mitochondrial evolution
-
Gray, M. W., G. Burger, and B. F. Lang. 1999. Mitochondrial evolution. Science 283:1476-1481.
-
(1999)
Science
, vol.283
, pp. 1476-1481
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
19
-
-
0036067792
-
Glycine binds the transcriptional accessory protein GcvR to disrupt a GcvA/GcvR interaction and allow GcvA-mediated activation of the Escherichia coli gcvTHP operon
-
Heil, G., L. T. Stauffer, and G. V. Stauffer. 2002. Glycine binds the transcriptional accessory protein GcvR to disrupt a GcvA/GcvR interaction and allow GcvA-mediated activation of the Escherichia coli gcvTHP operon. Microbiology 148:2203-2214.
-
(2002)
Microbiology
, vol.148
, pp. 2203-2214
-
-
Heil, G.1
Stauffer, L.T.2
Stauffer, G.V.3
-
20
-
-
0036806280
-
Potential applications and pitfalls of Bayesian inference of phylogeny
-
Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51:673-688.
-
(2002)
Syst. Biol.
, vol.51
, pp. 673-688
-
-
Huelsenbeck, J.P.1
Larget, B.2
Miller, R.E.3
Ronquist, F.4
-
21
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
22
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
23
-
-
0030209450
-
H-protein of the glycine cleavage system in Flavena: Alternative splicing of the pre-mRNA occurs exclusively in advanced C4 species of the genus
-
Kopriva, S., C. C. Chu, and H. Bauwe. 1996. H-protein of the glycine cleavage system in Flavena: alternative splicing of the pre-mRNA occurs exclusively in advanced C4 species of the genus. Plant J. 10:369-373.
-
(1996)
Plant J.
, vol.10
, pp. 369-373
-
-
Kopriva, S.1
Chu, C.C.2
Bauwe, H.3
-
24
-
-
0029360431
-
Alternative splicing results in two different transcripts for H-protein of the glycine cleavage system in the C4 species Flavena trinervia
-
Kopriva, S., R. Cossu, and H. Bauwe. 1995. Alternative splicing results in two different transcripts for H-protein of the glycine cleavage system in the C4 species Flavena trinervia Plant J. 8:435-441.
-
(1995)
Plant J.
, vol.8
, pp. 435-441
-
-
Kopriva, S.1
Cossu, R.2
Bauwe, H.3
-
25
-
-
0035501327
-
Back to the future: Bayesian inference arrives in phylogenetics
-
Lewis, P. O., and D. L. Swofford. 2001. Back to the future: Bayesian inference arrives in phylogenetics. Trends Ecol. Evol. 16:600-601.
-
(2001)
Trends Ecol. Evol.
, vol.16
, pp. 600-601
-
-
Lewis, P.O.1
Swofford, D.L.2
-
26
-
-
0034721739
-
Molecular evidence of a unique lipoamide dehydrogenase in plastids: Analysis of plastidic lipoamide dehydrogenase from Arabidopsis thaliana
-
Lutziger, I., and D. J. Oliver. 2000. Molecular evidence of a unique lipoamide dehydrogenase in plastids: analysis of plastidic lipoamide dehydrogenase from Arabidopsis thaliana. FEBS Lett. 484:12-16.
-
(2000)
FEBS Lett.
, vol.484
, pp. 12-16
-
-
Lutziger, I.1
Oliver, D.J.2
-
27
-
-
0034777745
-
Characterization of two cDNAs encoding mitochondrial lipoamide dehydrogenase from Arabidopsis
-
Lutziger, I., and D. J. Oliver. 2001. Characterization of two cDNAs encoding mitochondrial lipoamide dehydrogenase from Arabidopsis. Plant Physiol. 127:615-623.
-
(2001)
Plant Physiol.
, vol.127
, pp. 615-623
-
-
Lutziger, I.1
Oliver, D.J.2
-
28
-
-
0029915259
-
Expression, lipoylation and structure determination of recombinant pea H-protein in Escherichia coli
-
Macherei, D., J. Bourguignon, E. Forest, M. Faure, C. Cohen-Addad, and R. Douce. 1996. Expression, lipoylation and structure determination of recombinant pea H-protein in Escherichia coli. Eur. J. Biochem. 236:27-33.
-
(1996)
Eur. J. Biochem.
, vol.236
, pp. 27-33
-
-
Macherei, D.1
Bourguignon, J.2
Forest, E.3
Faure, M.4
Cohen-Addad, C.5
Douce, R.6
-
29
-
-
12344298301
-
The human malaria parasite Plasmodium falciparum possesses two distinct dihydrolipoamide dehydrogenases
-
McMillan, P. J., L. M. Stimmler, B. J. Foth, G. I. McFadden, and S. Muller. 2005. The human malaria parasite Plasmodium falciparum possesses two distinct dihydrolipoamide dehydrogenases. MoI. Microbiol. 55:27-38.
-
(2005)
MoI. Microbiol.
, vol.55
, pp. 27-38
-
-
McMillan, P.J.1
Stimmler, L.M.2
Foth, B.J.3
McFadden, G.I.4
Muller, S.5
-
30
-
-
0027787578
-
The hydrogenosome
-
Muller, M. 1993. The hydrogenosome. J. Gen. Microbiol. 139:2879-2889.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 2879-2889
-
-
Muller, M.1
-
31
-
-
0007390697
-
Interaction between the lipoamide-containing H-protein and the lipoamide dehydrogenase (L-protein) of the glycine decarboxylase multienzyme system. 1. Biochemical studies
-
Neuburger, M., A. M. Polidori, E. Pietre, M. Faure, A. Jourdain, J. Bourguignon, B. Pucci, and R. Douce. 2000. Interaction between the lipoamide-containing H-protein and the lipoamide dehydrogenase (L-protein) of the glycine decarboxylase multienzyme system. 1. Biochemical studies. Eur. J. Biochem. 267:2882-2889.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 2882-2889
-
-
Neuburger, M.1
Polidori, A.M.2
Pietre, E.3
Faure, M.4
Jourdain, A.5
Bourguignon, J.6
Pucci, B.7
Douce, R.8
-
32
-
-
0031978286
-
Clinical and microbiological aspects of Trichomonas vaginalis
-
Petrin, D., K. Delgaty, R. Bhatt, and G. Garber. 1998. Clinical and microbiological aspects of Trichomonas vaginalis. Clin. Microbiol. Rev. 11:300-317.
-
(1998)
Clin. Microbiol. Rev.
, vol.11
, pp. 300-317
-
-
Petrin, D.1
Delgaty, K.2
Bhatt, R.3
Garber, G.4
-
33
-
-
0036235945
-
Regulation of the yeast glycine cleavage genes is responsive to the availability of multiple nutrients
-
Piper, M. D., S. P. Hong, T. Eissing, P. Sealey, and I. W. Dawes. 2002. Regulation of the yeast glycine cleavage genes is responsive to the availability of multiple nutrients. FEMS Yeast Res. 2:59-71.
-
(2002)
FEMS Yeast Res.
, vol.2
, pp. 59-71
-
-
Piper, M.D.1
Hong, S.P.2
Eissing, T.3
Sealey, P.4
Dawes, I.W.5
-
34
-
-
33645060733
-
Fe-hydrogenase maturases in the hydrogenosomes of Trichomonas vaginalis
-
Pütz, S., P. Dolezal, G. Gelius-Dietrich, L. Bohacova, J. Tachezy, and K. Henze. 2006. Fe-hydrogenase maturases in the hydrogenosomes of Trichomonas vaginalis. Eukaryot. Cell 5:579-586.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 579-586
-
-
Pütz, S.1
Dolezal, P.2
Gelius-Dietrich, G.3
Bohacova, L.4
Tachezy, J.5
Henze, K.6
-
35
-
-
0028328269
-
Similarity between a ubiquitous promoter element in an ancient eukaryote and mammalian initiator elements
-
Quon, D. V., M. G. Delgadillo, A. Khachi, S. T. Smale, and P. J. Johnson. 1994. Similarity between a ubiquitous promoter element in an ancient eukaryote and mammalian initiator elements. Proc. Natl. Acad. Sci. USA 91:4579-4583.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4579-4583
-
-
Quon, D.V.1
Delgadillo, M.G.2
Khachi, A.3
Smale, S.T.4
Johnson, P.J.5
-
36
-
-
0029856340
-
A possible mitochondrial gene in the early-branching amitochondriate protist Trichomonas vaginalis
-
Roger, A. J., C. G. Clark, and W. F. Doolittle. 1996. A possible mitochondrial gene in the early-branching amitochondriate protist Trichomonas vaginalis. Proc. Natl. Acad. Sci. USA 93:14618-14622.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 14618-14622
-
-
Roger, A.J.1
Clark, C.G.2
Doolittle, W.F.3
-
37
-
-
23644440247
-
A glycine-cleavage complex as part of the folate one-carbon metabolism of Plasmodium falciparum
-
Salcedo, E., P. F. Sims, and J. E. Hyde. 2005. A glycine-cleavage complex as part of the folate one-carbon metabolism of Plasmodium falciparum. Trends Parasitol. 21:406-411.
-
(2005)
Trends Parasitol.
, vol.21
, pp. 406-411
-
-
Salcedo, E.1
Sims, P.F.2
Hyde, J.E.3
-
38
-
-
0033199777
-
Bayesian statistics in genetics: A guide for the uninitiated
-
Shoemaker, J. S., I. S. Painter, and B. S. Weir. 1999. Bayesian statistics in genetics: a guide for the uninitiated. Trends Genet. 15:354-358.
-
(1999)
Trends Genet.
, vol.15
, pp. 354-358
-
-
Shoemaker, J.S.1
Painter, I.S.2
Weir, B.S.3
-
39
-
-
12544255323
-
The real 'kingdoms' of eukaryotes
-
Simpson, A. G., and A. J. Roger. 2004. The real 'kingdoms' of eukaryotes. Curr. Biol. 14:R693-R696.
-
(2004)
Curr. Biol.
, vol.14
-
-
Simpson, A.G.1
Roger, A.J.2
-
40
-
-
3142746681
-
Mitochondrial-type assembly of FeS centers in the hydrogenosomes of the amitochondriate eukaryote Trichomonas vaginalis
-
Sutak, R., P. Dolezal, H. L. Fiuraera, I. Hrdy, A. Dancis, M. Delgadillo-Correa, P. J. Johnson, M. Muller, and J. Tachezy. 2004. Mitochondrial-type assembly of FeS centers in the hydrogenosomes of the amitochondriate eukaryote Trichomonas vaginalis. Proc. Natl. Acad. Sci. USA 101:10368-10373.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10368-10373
-
-
Sutak, R.1
Dolezal, P.2
Fiuraera, H.L.3
Hrdy, I.4
Dancis, A.5
Delgadillo-Correa, M.6
Johnson, P.J.7
Muller, M.8
Tachezy, J.9
-
41
-
-
0034804608
-
Mitochondrial type iron-sulfur cluster assembly in the amitochondriate eukaryotes Trichomonas vaginalis and Giardia intestinalis, as indicated by the phylogeny of IscS
-
Tachezy, J., L. B. Sanchez, and M. Muller. 2001. Mitochondrial type iron-sulfur cluster assembly in the amitochondriate eukaryotes Trichomonas vaginalis and Giardia intestinalis, as indicated by the phylogeny of IscS. Mol. Biol. Evol. 18:1919-1928.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1919-1928
-
-
Tachezy, J.1
Sanchez, L.B.2
Muller, M.3
-
42
-
-
15444370758
-
Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis
-
Vanacova, S., W. Yan, J. M. Carlton, and P. J. Johnson. 2005. Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis. Proc. Natl. Acad. Sci. USA 102:4430-4435.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4430-4435
-
-
Vanacova, S.1
Yan, W.2
Carlton, J.M.3
Johnson, P.J.4
-
43
-
-
0037084065
-
Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: A common origin for both organelles
-
van der Giezen, M., D. J. Slotboom, D. S. Borner, P. L. Dyal, M. Harding, G. P. Xue, T. M. Embley, and E. R. Kunji. 2002. Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: a common origin for both organelles. EMBO J. 21:572-579.
-
(2002)
EMBO J.
, vol.21
, pp. 572-579
-
-
Van Der Giezen, M.1
Slotboom, D.J.2
Borner, D.S.3
Dyal, P.L.4
Harding, M.5
Xue, G.P.6
Embley, T.M.7
Kunji, E.R.8
-
44
-
-
0027249852
-
Roles of the GcvA and PurR proteins in negative regulation of the Escherichia coli glycine cleavage enzyme system
-
Wilson, R. L., L. T. Stauffer, and G. V. Staufler. 1993. Roles of the GcvA and PurR proteins in negative regulation of the Escherichia coli glycine cleavage enzyme system. J. Bacteriol. 175:5129-5134.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 5129-5134
-
-
Wilson, R.L.1
Stauffer, L.T.2
Staufler, G.V.3
|