Structural analysis of the 26S proteasome by cryoelectron tomography

Biochemical and Biophysical Research Communications

Volumn 353, Issue 1, 2007, Pages 115-120

  Nickell, Stephan ^a   Mihalache, Oana ^a   Beck, Florian ^a   Hegerl, Reiner ^a   Korinek, Andreas ^a   Baumeister, Wolfgang ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

26s; Electron tomography; Proteasome

Indexed keywords

26S PROTEASOME; ICE; PROTEASOME;

ANIMAL CELL; ARTICLE; CRYOELECTRON TOMOGRAPHY; DROSOPHILA; DYNAMIC EXERCISE; EMBRYO; EUKARYOTIC CELL; IMAGE ANALYSIS; IMAGE PROCESSING; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; TOMOGRAPHY; TRANSMISSION ELECTRON MICROSCOPY;

CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; DROSOPHILA PROTEINS; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN CONFORMATION; TOMOGRAPHY;

EUKARYOTA;

EID: 33845619553     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.11.141     Document Type: Article

References (25)

1. Baumeister W., Walz J., Zuehl F., and Seemueller E. The proteasome: paradigm of a self-compartmentalizing protease. Cell 92 (1998) 367-380
2. Hershko A., and Ciechanover A. The ubiquitin system. Annu. Rev. Biochem. 67 (1998) 425-479
3. Coux O., Tanaka K., and Goldberg A.L. Structure and functions of the 20S and 26S proteasomes. Annu. Rev. Biochem. 65 (1996) 801-847
4. Zhang Z.G., Clawson A., and Rechsteiner M. The proteasome activator 11S regulator or PA28-Contribution by both alpha and beta subunits to proteasome activation. J. Biol. Chem. 273 (1998) 30660-30668
5. Voges D., Zwickl P., and Baumeister W. The 26S proteasome: a molecular machine designed for controlled proteolysis. Annu. Rev. Biochem. 68 (1999) 1015-1068
6. Hölzl H., Kapelari B., Kellermann J., Seemuller E., Sumegi M., Udvardy A., Medalia O., Sperling J., Muller S.A., Engel A., and Baumeister W. The regulatory complex of Drosophila melanogaster 26S proteasomes: subunit composition and localization of a deubiquitylating enzyme. J. Cell Biol. 150 (2000) 119-129
7. Yoshimura T., Kameyama K., Takagi T., Ikai A., Tokunaga F., Koide T., Tanahashi N., Tamura T., Cejka Z., Baumeister W., Tanaka K., and Ichihara A. Molecular characterization of the 26s proteasome complex from rat-liver. J. Struct. Biol. 111 (1993) 200-211
8. Peters J.M., Cejka Z., Harris J.R., Kleinschmidt J.A., and Baumeister W. Structural features of the 26-S proteasome complex. J. Mol. Biol. 234 (1993) 932-937
9. Bochtler M., Ditzel L., Groll M., Hartmann C., and Huber R. The proteasome. Annu. Rev. Biophys. Biomol. Struct. 28 (1999) 295
10. Lupas A., Koster A.J., and Baumeister W. Structural features of 26S and 20S proteasomes. Enzyme Protein 47 (1993) 252-273
11. Glickman M.H., Rubin D.M., Coux O., Wefes I., Pfeifer G., Cjeka Z., Baumeister W., Fried V.A., and Finley D. A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Cell 94 (1998) 615-623
12. Walz J., Erdmann A., Kania M., Typke D., Koster A.J., and Baumeister W. 26S proteasome structure revealed by three-dimensional electron microscopy. J. Struct. Biol. 121 (1998) 19-29
13. Frank J. Single-particle imaging of macromolecules by cryo-electron microscopy. Annu. Rev. Biophys. Biomol. Struct. 31 (2002) 303-319
14. Nitsch M., Walz J., Typke D., Klumpp M., Essen L.-O., and Baumeister W. Group II chaperonin in an open conformation examined by electron tomography. Nat. Struct. Biol. 5 (1998) 855-857
15. Walz J., Tamura T., Tamura N., Grimm R., Baumeister W., and Koster A.J. Tricorn protease exists as an icosahedral supermolecule in vivo. Mol. Cell 1 (1997) 59-65
16. Udvardy A. Purification and characterization of a multiprotein component of the Drosophila-26-S (1500 kDa) proteolytic complex. J. Biol. Chem. 268 (1993) 9055-9062
17. Dierksen K., Typke D., Hegerl R., and Baumeister W. Towards automatic electron tomography .2. Implementation of autofocus and low-dose procedures. Ultramicroscopy 49 (1993) 109-120
18. Nickell S., Förster F., Linaroudis A., Del Net W., Beck F., Hegerl R., Baumeister W., and Plitzko J.M. TOM software toolbox: acquisition and analysis for electron tomography. J. Struct. Biol. 149 (2005) 227-234
19. Roseman A.M. Particle finding in electron micrographs using a fast local correlation algorithm. Ultramicroscopy 94 (2003) 225-236
20. Saxton W.O., and Baumeister W. The correlation averaging of a regularly arranged bacterial-cell envelope protein. J. Microsc.-Oxford 127 (1982) 127-138
21. Penczek P.A., Grassucci R.A., and Frank J. The ribosome at improved resolution-new techniques for merging and orientation refinement in 3d cryoelectron microscopy of biological particles. Ultramicroscopy 53 (1994) 251-270
22. Lowe J., Stock D., Jap R., Zwickl P., Baumeister W., and Huber R. Crystal-structure of the 20S proteasome from the archaeon T-acidophilum at 3.4 Å resolution. Science 268 (1995) 533-539
23. Smith D.M., Kafri G., Cheng Y.F., Ng D., Walz T., and Goldberg A.L. ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Mol. Cell 20 (2005) 687-698
24. Ortega J., Lee H.S., Maurizi M.R., and Steven A.C. ClpA and ClpX ATPases bind simultaneously to opposite ends of ClpP peptidase to form active hybrid complexes. J. Struct. Biol. 146 (2004) 217-226
25. Rohrwild M., Pfeifer G., Santarius U., Muller S.A., Huang H.C., Engel A., Baumeister W., and Goldberg A.L. The ATP-dependent HsIVU protease from Escherichia coli is a four-ring structure resembling the proteasome. Nat. Struct. Biol. 4 (1997) 133-139