Interspecific differentiation and intraspecific substructure in two closely related clupeids with extensive hybridization, Alosa alosa and Alosa fallax

Journal of Fish Biology

Volumn 69, Issue SUPPL. B, 2006, Pages 242-259

  Alexandrino, P ^a,b   Faria, R ^a,b   Linhares, D ^a   Castro, F ^a   Le Corre, M ^c   Sabatie R ^c   Bagliniere J L ^c   Weiss, S ^d  

^a CENTRO DE INVESTIGAÇÃO EM BIODIVERSIDADE E RECURSOS GENÉTICOS   (Portugal)

^b UNIVERSITY OF PORTO   (Portugal)

^c AGROCAMPUS OUEST   (France)

^d UNIVERSITY OF GRAZ   (Austria)

Author keywords

Allozymes; Anadromy; Hybridization; Introgression; mtDNA; Shads

Indexed keywords

ALLELE; ALLOZYME; BAYESIAN ANALYSIS; CLUPEOID; CYTOCHROME; GENETIC STRUCTURE; HOME RANGE; HYBRIDIZATION; INTERSPECIFIC VARIATION; INTRASPECIFIC VARIATION; INTROGRESSION; MITOCHONDRIAL DNA; RIVER SYSTEM;

ATLANTIC OCEAN; EURASIA; EUROPE; LIMIA RIVER; MEDITERRANEAN SEA; MONDEGO RIVER; PORTUGAL; SOUTHERN EUROPE;

ALOSA ALOSA; ALOSA FALLAX; ALOSINAE; CLUPEIDAE;

EID: 33845538905     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2006.01289.x     Document Type: Article

References (45)

1. Alexandrino, P. J. (1996a). Estudo de Populações de Sável (Alosa alosa L.) e Savelha (Alosa fallax Lacépède): Análise da diferenciação interespecífica subestruturação e hibridação. Doctoral Thesis, University of Porto, Porto.
2. Alexandrino, P. J. (1996b). Genetic and morphological differentiation among some Portuguese populations of allis shad Alosa alosa (L., 1758) and twaite shad Alosa fallax (Lacépède, 1803). Publicaciones Especiales Instituto Español de Oceanografia 21, 15-24.
3. Alexandrino, P. J. & Boisneau, P. (2000). Diversité génétique. In Les aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 179-198. Paris: INRA-Cemagref.
4. Alexandrino, P. J., Ferrand, N. & Rocha, J. (1996). Genetic polymorphism of a haemoglobin chain and adenosine deaminase in European shads: evidence for the existence of two distinct genetic entities with natural hybridisation. Journal of Fish Biology 48, 447-456.
5. Aprahamian, M. W., Baglinière, J. L., Sabatié, M. R., Alexandrino, P., Thiel, R., Aprahamian, C. D. (2003). Biology, status, and conservation of the anadromous Atlantic twaite shad, Alosa fallax fallax. In Biodiversity, Status and Conservation of the World's Shad (Limburg, K. E. & Waldman J. R., eds), pp. 103-124. Baltimore, MD: American Fisheries Society Symposium.
6. Baglinière, J. L. (2000). Le genre Alosa sp. In Les aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 1-30. Paris: INRA-Cemagref.
7. Baglinière, J. L., Sabatié, M. R., Rochard, E., Alexandrino, P., Aprahamian, M. W. (2003). The allis shad (Alosa alosa): biology, ecology, range, and status of populations. In Biodiversity, Status and Conservation of the World's Shad (Limburg, K. E. & Waldman, J. R., eds), pp. 103-124. Baltimore, MD: American Fisheries Society Symposium.
8. Belkhir, K., Borsa, P., Goudet, J., Chikhi, L., Bonhomme, F. (1996-2002). GENETIX 4.03, logiciel sous Windows TM pour la génétique des populations. Montpellier: CNRS-Université de Montpellier.
9. Bentzen, P., Leggett, W. C. & Brown, G. C. (1993). Genetic relationships among the shads (Alosa) revealed by mitochondrial DNA analysis. Journal of Fish Biology 43, 909-917.
10. Black, W. C. & Krafsur, E. S. (1985). A FORTRAN program for the calculation and analysis of two-locus linkage disequilibrium coefficients. Theoretical Applied Genetics 70, 491-496.
11. Boisneau, P., Mennesson-Boisneau, C. & Guyomard, R. (1992). Electrophoretic identity between allis shad Alosa alosa L. and twaite shad, Alosa fallax (Lacépède). Journal of Fish Biology 40, 731-738.
12. Cassous-Leins, J. J., Cassous-Leins, F., Boisneau, P. & Baglinière, J. L. (2000). La reproduction. In Les Aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 73-92. Paris: INRA-Cemagraf.
13. Castro, F., Linhares, D. & Alexandrino, P. (1999). Acid phosphatase polymorphism in European shad (Fish: Clupeids). Biochemical Genetics 37, 251-256.
14. Chubb, A. L., Zink, R. M. & Fitzsimons, J. M. (1998). Patterns of mtDNA variation in Hawaiian freshwater fishes: phylogeographic consequences of amphidromy. Journal of Heredity 89, 8-16.
15. Clement, M., Posada, D. & Crandall, K. A. (2000). TCS: a computer program to estimate gene genealogies. Molecular Ecology 9, 1657-1659.
16. Collares-Pereira, M. J., Cowx, I. G., Sales Luis, T., Pedrosa, N. & Santos-Reis, M. (1999). Observations on the ecology of a landlocked population of allis shad in Aguieira Reservoir, Portugal. Journal of Fish Biology 55, 658-664.
17. Excoffier, L., Smouse, P. E. & Quattro, J. M. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
18. Felsenstein, J. (2004). PHYLIP (Phylogeny Inference Package) version 3.6. Seattle, WA: Department of Genome Sciences, University of Washington.
19. Harris, H. & Hopkinson, D. A. (1967). Handbook of Enzyme Electrophoresis in Human Genetics. Amsterdam: North-Holland Publishers.
20. Hoestlandt, H. (1991). General introduction to Clupeidae. In The Freshwater Fishes of Europe: Clupeidae, Anguillidae, Vol. 2 (Hoestlandt, H., ed.), pp. 13-31. Wiesbaden: Aula-Verlag.
21. Kompf, J., Siebert, G. & Ritter, H. (1979). Human pancreatic amylase polymorphism: formal genetics and population genetics. Human Genetics 51, 217-220.
22. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5, 150-163.
23. Lozano-Cabo, F. (1964). Los peces de las aguas continentals espanolas. Madrid: Servicio Nacional de Pesca Fluvial y Caza.
24. McDowall, R. M. (2001). Diadromy, diversity and divergence: implications for speciation processes. Fish and Fisheries 2, 278-286.
25. McDowall, R. M. (2003). Shads and anadromy: implications for ecology, evolution, and biogeography. In Biodiversity, Status, and Conservation of the World's Shads (Limburg, K. E. & Waldman, J. R., eds), pp. 11-23. Baltimore, MD: American Fisheries Society.
26. Mennesson-Boisneau, C., Aprahamian, M. W., Sabatié, M. R. & Cassous-Leins, J. J. (2000a). Caractéristiques des adultes. In Les aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 33-53. Paris: INRA-Cemagref.
27. Mennesson-Boisneau, C., Aprahamian, M. W., Sabatié, M. R. & Cassous-Leins, J. J. (2000b). Remontée migratoire des adultes. In Les aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 55-72. Paris: INRA-Cemagref.
28. Nei, M. (1972). Genetic distance between populations. American Naturalist 106, 283-292.
29. Nei, M. (1987). Molecular Evolutionary Genetics and Evolution. New York: Columbia University Press.
30. Palumbi, S. R. (1996). PCR and molecular systematics. In Molecular Systematics, 2nd edn (Hillis, D., Moritz, C. & Mable, B., eds), pp. 205-247. Sunderland, MA: Sinauer Press.
31. Parker, S. R. (1997). Sequence Navigator. Multiple Sequence alignment software. Methods in Molecular Biology 70, 145-154.
32. Pritchard, J. K., Stephens, M. & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
33. Quignard, J. P. & Douchement, C. (1991). Alosa alosa (Linnaeus, 758). In The Freshwater Fishes of Europe: Clupeidae, Anguillidae, Vol. 2 (Hoestlandt, H., ed.), pp. 89-126. Wiesbaden: Aula-Verlag.
34. Quignard, J. P. & Kartas, F. (1977). Les aloses feintes, Alosa fallax (Lacépède, 1803), poissons clupéiformes de l'Atlantique nord-est et de la Méditerranée: Etude des caractères numériques. Bulletin Musée National Histoire Naturelle, (3ème série) 501, 1241-1256.
35. Raymond, M. & Rousset, F. (1995). GENEPOP (version 3.4): a population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248-249.
36. Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X. & Rozas, R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19, 2496-2497.
37. Sabatié, M. R., Boisneau, P. & Alexandrino, P. (2000). Variabilité morphologique. In Les aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 137-178. Paris: INRA-Cemagref.
38. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. New York: Cold Spring Harbor Press.
39. Schneider, S., Roessli, D. & Excoffier, L. (2000). Arlequin Version 2.000: A Software for Population Genetics Data Analysis. Geneva: Genetics and Biometry Laboratory, University of Geneva.
40. Taverny, C., Belaud, A., Elite, P. & Sabatié, M. R. (2000). Influence des activités humaines. In Les aloses Alosa alosa et Alosa fallax spp. (Baglinière, J. L. & Elie, P., eds), pp. 227-258. Paris: INRA-Cemagref.
41. Templeton, A. R., Crandall, K. A. & Sing, C. F. (1992). A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132, 619-633.
42. Ward, R. D., Woodwark, M. & Skibinski, D. O. F. (1994). A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. Journal of Fish Biology 44, 213-232.
43. Weir, B. S. & Cockerham, C. C. (1984). Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370.
44. Whitehead, P. J. P. (1984). Family Clupeidae. In Fishes of the North-eastern Atlantic and the Mediterranean (Whitehead, P. J. P., Bauchot, M.-L., Hureau, J. C., Nielsen, J. & Tortonese, E., eds), pp. 268-281. Paris: UNESCO.
45. Whitehead, P. J. P. (1985). FAO species catalogue, Vol. 7. Clupeid fishes of the world (Suborder Clupeiodei). An annotated and illustrated catalogue of the herrings, sardines, pilchards, sprats, shads, anchovies, and wolf-herrings. Part I. FAO Fisheries Synopsis 125, 1-303.