Investigation of bacteriophage MS2 viral dynamics using model discrimination analysis and the implications for phage therapy

Biotechnology Progress

Volumn 22, Issue 6, 2006, Pages 1650-1658

  Jain, Rishi ^a   Knorr, Andrea L ^a   Bernacki, Joseph ^a   Srivastava, Ranjan ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; GROWTH KINETICS; MATHEMATICAL MODELS; REGRESSION ANALYSIS; RNA;

MODEL DISCRIMINATION ANALYSIS; PHAGE THERAPY; PROGENY PHAGES; VIRAL DYNAMICS;

BACTERIOPHAGES;

ARTICLE; BIOLOGICAL MODEL; CELL PROLIFERATION; COLIPHAGE; COMPUTER SIMULATION; DISCRIMINANT ANALYSIS; ESCHERICHIA COLI; KINETICS; PHYSIOLOGY; VIROLOGY; VIRUS REPLICATION;

CELL PROLIFERATION; COMPUTER SIMULATION; DISCRIMINANT ANALYSIS; ESCHERICHIA COLI; KINETICS; LEVIVIRUS; MODELS, BIOLOGICAL; VIRUS REPLICATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 33845536790     PISSN: 87567938     EISSN: None     Source Type: Journal    
DOI: 10.1021/bp060161s     Document Type: Article

References (51)

1. Summers, W. C. Bacteriophage Research: early history. In Bacteriophages: Biology and Applications; Kutter, E., Sulakvelidze, A., Eds.; CRC Press: Boca Raton, 2005.
2. Jado, I.; Lopez, R.; Garcia, E.; Fenoll, A.; Casal, J.; Garcia, P., Phage lytic enzymes as therapy for antibiotic-resistant Streptococcus pneumoniae infection in a murine sepsis model. J. Antimicrob. Chemother. 2003, 52, (6), 967-973.
3. Cheng, Q.; Nelson, D.; Zhu, S.; Fischetti, V. A., Removal of group B streptococci colonizing the vagina and oropharynx of mice with a bacteriophage lytic enzyme. Antimicrob. Agents Chemother. 2005, 49 (1), 111-117.
4. Loeffler, J. M.; Nelson, D.; Fischetti, V. A., Rapid killing of Streptococcus pneumoniae with a bacteriophage cell wall hydrolase. Science 2001, 294 (5549), 2170-2172.
5. Yoong, P.; Schuch, R.; Nelson, D.; Fischetti, V. A., PlyPH, a bacteriolytic enzyme with a broad pH range of activity and lytic action against Bacillus anthracis. J. Bacteriol. 2006, 188 (7), 2711-2714.
6. Sulakvelidze, A.; Barrow, P. Phage therapy in animals and agribusiness. In Bacteriophage: Biology and Applications; Kutter, E., Sulakvelidze, A., Eds.; CRC Press: Boca Raton, 2005.
7. Sulakvelidze, A.; Kutter, E. Bacteriophage therapy in humans. In Bacteriophages: Biology and Applications; Kutter, E., Sulakvelidze, A., Eds.; CRC Press: Boca Raton, 2005.
8. Schuch, R.; Nelson, D.; Fischetti, V. A. A bacteriolytic agent that detects and kills Bacillus anthracis. Nature 2002, 418 (6900), 884-889.
9. Ellis, E. L.; Delbruck, M. The growth of Bacteriophage. J. Gen. Physiol. 1939, 22 (3), 365-384.
10. Weld, R. J.; Butts, C.; Heinemann, J. A. Models of phage growth and their applicability to phage therapy. J. Theor. Biol. 2004, 227 (1), 1-11.
11. Payne, R. J.; Jansen, V. A. Understanding bacteriophage therapy as a density-dependent kinetic process. J. Theor. Biol. 2001, 208 (1), 37-48.
12. Arkin, A.; Ross, J.; McAdams, H. H. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 1998, 149 (4), 1633-1648.
13. Endy, D.; Kong, D.; Yin, J. Intracellular kinetics of a growing virus: a genetically structured simulation for bacteriophage T7. Biotechnol. Bioeng. 1997, 55 (2), 375-389.
14. You, L.; Suthers, P. F.; Yin, J. Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico. J. Bacteriol. 2002, 184 (7), 1888-1894.
15. Rabinovitch, A.; Hadas, H.; Einav, M.; Melamed, Z.; Zaritsky, A. Model for bacteriophage T4 development in Escherichia coli. J. Bacteriol. 1999, 181 (5), 1677-1683.
16. Kim, H.; Yin, J. Energy-efficient growth of phage Q Beta in Escherichia coli. Biotechnol. Bioeng. 2004, 88 (2), 148-156.
17. Beretta, E.; Kuang, Y. Modeling and analysis of a marine bacteriophage infection. Math. Biosci. 1998, 149 (1), 57-76.
18. Burroughs, N. J.; Marsh, P.; Wellington, E. M. Mathematical analysis of growth and interaction dynamics of streptomycetes and a bacteriophage in soil. Appl. Environ. Microbiol. 2000, 66 (9), 3868-3877.
19. Lenski, R. E. Dynamics of interactions between bacteria and virulent bacteriophage. Adv. Microb. Ecol. 1988, 10, 1-44.
20. Weitz, J. S.; Hartman, H.; Levin, S. A. Coevolutionary arms races between bacteria and bacteriophage. Proc. Natl. Acad. Sci. U.S.A. 2005, 102 (27), 9535-9540.
21. Levin, B. R.; Stewart, F. M.; Chao, L. Resource-limited growth, competition and predation: A model and experimental studies with bacteria and bacteriophage. Am. Nat. 1977, 111 (977), 3-24.
22. Livermore, D. M. Antibiotic resistance in staphylococci. Int. J. Antimicrob. Agents 2000, 16 Suppl 1, S3-10.
23. Summers, W. C. Bacteriophage discovered. In Felix d'Herelle and the Origins of Molecular Biology; Yale University Press: New Haven, 1999; pp 47-59.
24. Levin, B. R.; Bull, J. J. Population and evolutionary dynamics of phage therapy. Nat. Rev. Microbiol. 2004, 2 (2), 166-173.
25. Clark, J. R.; March, J. B. Bacteriophages and biotechnology: vaccines, gene therapy and antibacterials. Trends Biotechnol. 2006, 24 (5), 212-218.
26. Sulakvelidze, A.; Alavidze, Z.; Morris, J. G., Jr. Bacteriophage therapy. Antimicrob. Agents Chemother. 2001, 45 (3), 649-659.
27. Stewart, W.; Sorenson, J. Bayesian estimation of common parameters from multiresponse data with missing observations. Technometrics 1981, 23 (2), 131-141.
28. Knorr, A. L.; Srivastava, R. Evaluation of HIV-1 kinetic models using quantitative discrimination analysis. Bioinformatics 2005, 21 (8), 1668-1677.
29. Stewart, W.; Caracatsios, M.; Sorenson, J. Parameter estimation from multiresponse data. AIChE J. 1992, 38 (5), 641-650.
30. Stewart, W.; Henson, T.; Box, G. Model discrimination and criticism with single-response data. AIChE J. 1996, 42 (11), 3055-3062.
31. Stewart, W.; Shon, Y.; Box, G. Discrimination and goodness of fit of multiresponse mechanistic models. AIChE J. 1998, 44 (6), 1404-1412.
32. Davis, J. E.; Jr, J. H. S.; Sinsheimer, R. L. In Bacteriophage MS2: Another RNA Phage; National Academy of Sciences: La Jolla, 1961.
33. Shuler, M. L.; Kargi, F. Bioprocess Engineering, 2 ed.; Prentice Hall PTR: Upper Saddle River, NJ, 2002.
34. Eisenstark, A. Bacteriophage techniques. In Methods in Virology; Maramorosch, K., Koprowski, H., Eds.; Academic Press: New York, 1967; Vol. 1, pp 492-495.
35. Bailey, J. E.; Ollis, D. F. Biochemical Engineering Fundamentals, 2 ed.; McGraw-Hill: Singapore, 1986.
36. Manchak, J.; Anthony, K. G.; Frost, L. S. Mutational analysis of F-pilin reveals domains for pilus assembly, phage infection and DNA transfer. Mol. Microbiol. 2002, 43 (1), 195-205.
37. Burke, J. M.; Novotny, C. P.; Fives-Taylor, P. Defective F pili and other characteristics of Flac and Hfr Escherichia coli mutants resistant to bacteriophage R17. J. Bacteriol. 1979, 140 (2), 525-531.
38. Luria, S.; Delbruck, M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 1943, 28 (6), 491-511.
39. Lederberg, J.; Lederberg, E. M. Replica plating and indirect selection of bacterial mutants. J. Bacteriol. 1952, 63 (3), 399-406.
40. Luria, S. Mutations of bacterial viruses affecting their host range. Genetics 1945, 30 (1), 84-99.
41. Hershey, A. Mutation of bacteriophage with respect to type of plaque. Genetics 1946, 31 (6), 620-640.
42. Silverman, P. M. Towards a structural biology of bacterial conjugation. Molecular Microbiol. 1997, 23 (3), 423-429.
43. Biebricher, C. K.; Duker, E. M. F and type 1 piliation of Escherichia coli. J. Gen. Microbiol. 1984, 130 (4), 951-957.
44. Stallions, D. R.; Curtiss, R., 3rd. Bacterial conjugation under anaerobic conditions. J. Bacteriol. 1972, 111 (1), 294-295.
45. Novotny, C. P.; Fives-Taylor, P. Effects of high temperature on Escherichia coli F pili. J. Bacteriol. 1978, 133 (2), 459-464.
46. Lenski, R. E.; Levin, B. R. Constraints on the coevolution of bacteria and virulent phage: A model, some experiments and predictions for natural communities. Am. Nat. 1985, 125 (4), 585-602.
47. Lerner, F. L. The Population Biology of Male-Specific Bacteriophages: Existence Conditions. University of Massachusetts, Amherst, 1984.
48. Levin, B. R.; Bull, J. J. Phage therapy revisited: the population biology of a bacterial infection and its treatment with bacteriophage and antibiotics. Am. Nat. 1996, 147 (6), 881-898.
49. Adams, M. H.; Wassermann, F. E. Frequency distribution of phage release in the one-step growth experiment. Virology 1956, 2 (1), 96-108.
50. Carletti, M. Numerical simulation of a Campbell-like stochastic delay model for bacteriophage infection. Math. Med. Biol. 2006, Epub ahead of print.
51. Gourley, S. A.; Kuang, Y. A delay reaction-diffusion model of the spread of bacteriophage infection. Siam J. Appl. Math. 2005, 65 (2), 550-566.