Molecular detection of epiphytic Acaryochloris spp. on marine macroalgae

Applied and Environmental Microbiology

Volumn 72, Issue 12, 2006, Pages 7912-7915

  Ohkubo, Satoshi ^a   Miyashita, Hideaki ^a   Murakami, Akio ^b   Takeyama, Haruko ^c   Tsuchiya, Tohru ^a   Mimuro, Mamoru ^a  

^a KYOTO UNIVERSITY   (Japan)

^b KOBE UNIVERSITY   (Japan)

^c TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPHYLL; ELECTROPHORESIS; GENES; MARINE BIOLOGY; MOLECULAR STRUCTURE; RNA;

ALGAL PLASTIDS; CYANOBACTERIA; MARINE MACROALGAE; MOLECULAR DETECTION;

ALGAE;

CHLOROPHYLL; RNA 16S;

CYANOBACTERIUM; DETECTION METHOD; ELECTROKINESIS; EPIPHYTE; MACROALGA; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; RNA;

ACARYOCHLORIS; ARTICLE; BROWN ALGA; CYANOBACTERIUM; DENATURING GRADIENT GEL ELECTROPHORESIS; DIAGNOSTIC PROCEDURE; EPIPHYTE; GENE AMPLIFICATION; GENE SEQUENCE; GREEN ALGA; MACROALGA; MARINE ENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASTID; POLYMERASE CHAIN REACTION; RED ALGA;

ALGAE; CHLOROPHYLL; CYANOBACTERIA; DNA, BACTERIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENES, RRNA; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

ACARYOCHLORIS; ALGAE; CYANOBACTERIA;

EID: 33845522443     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01148-06     Document Type: Article

References (20)

1. Abed, R. M. M., and F. Garcia-Pichel. 2001. Long-term compositional changes after transplant in a microbial mat cyanobacterial community revealed using a polyphasic approach. Environ. Microbiol. 3:53-62.
2. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
3. Boutte, C., S. Grubisic, P. Balthasart, and A. Wilmotte. 2006. Testing of primers for the study of cyanobacterial molecular diversity by DGGE. J. Microbiol. Methods 65:542-550.
4. Castberg, T., A. Larsen, R. A. Sandaa, C. P. D. Brussaard, J. K. Egge, M. Heldal, R. Thyrhaug, E. J. van Hannen, and G. Bratbak. 2001. Microbial population dynamics and diversity during a bloom of the marine coccolithophorid Emiliania huxleyi (Haptophyta). Mar. Ecol. Prog. Ser. 221:39-46.
5. Evstigneev, V. B., and N. A. Cherkashina. 1970. Isolation of chlorophyll d from the alga Grateloupia dichotoma. Biochemistry (Moscow) 35:48-52.
6. Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62:340-346.
7. Holt, A. S., and H. V. Morley. 1959. A proposed structure for chlorophyll d. Can. J. Chem. 37:507-514.
8. Manning, W. M., and H. H. Strain. 1943. Chlorophyll d, a green pigment of red algae. J. Biol. Chem. 151:1-19.
9. McBain, A. J., R. G. Bartolo, C. E. Catrenich, D. Charbonneau, R. G. Ledder, A. H. Rickard, S. A. Symmons, and P. Gilbert. 2003. Microbial characterization of biofilms in domestic drains and the establishment of stable biofilm microcosms. Appl. Environ. Microbiol. 69:177-185.
10. Miyashita, H., H. Ikemoto, N. Kurano, K. Adachi, M. Chihara, and S. Miyachi. 1996. Chlorophyll d as a major pigment. Nature 383:402.
11. Miyashita, H., K. Adachi, N. Kurano, H. Ikemoto, M. Chihara, and S. Miyachi. 1997. Pigment composition of a novel oxygenic photosynthetic prokaryote containing chlorophyll d as the major chlorophyll. Plant Cell Physiol. 38:274-281.
12. Miyashita, H., H. Ikemoto, N. Kurano, S. Miyachi, and M. Chihara. 2003. Acaryochloris marina gen. et sp. nov. (Cyanobacteria), an oxygenic photosynthetic prokaryote containing Chl d as a major pigment. J. Phycol. 39:1247-1253.
13. Murakami, A., H. Miyashita, M. Iseki, K. Adachi, and M. Mimuro. 2004. Chlorophyll d in an epiphytic cyanobacterium of red algae. Science 303:1633.
14. Murakami, A., H. Miyashita, M. Iseki, K. Adachi, and M. Mimuro. 2005. Chlorophyll d is not of red algal origin but from an epiphytic cyanobacterium, p. 170-172. In A. van der Est and D. Bruce (ed.), Photosynthesis: fundamental aspect to global perspectives. Allen Press, Lawrence, Kans.
15. Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
16. Muyzer, G., A. Teske, C. O. Wirsen, and H. W. Jannasch. 1995. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164:165-172.
17. Nicol, G. W., L. A. Glover, and J. I. Prosser. 2003. Spatial analysis of archaeal community structure in grassland soil. Appl. Environ. Microbiol. 69:7420-7429.
18. Nübel, U., F. Garcia-Pichel, and G. Muyzer. 1997. PCR primers to amplify 16S rRNA genes from cyanobacteria. Appl. Environ. Microbiol. 63:3327-3332.
19. Taton, A., S. Grubisic, E. Brambilla, R. De Wit, and A. Wilmotte. 2003. Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurd Dry Valleys, Antarctica): a morphological and molecular approach. Appl. Environ. Microbiol. 69:5157-5169.
20. Thacker, R. W., and S. Starnes. 2003. Host specificity of the symbiotic cyanobacterium Oscillatoria spongeliae in marine sponges, Dysidea spp. Mar. Biol. 142:643-648.