Discriminating the impact of recent human mediated stock transfer from historical gene flow on genetic structure of European grayling Thymallus thymallus L.

Journal of Fish Biology

Volumn 69, Issue SUPPL. C, 2006, Pages 115-135

  Gum, B ^a   Gross, R ^b   Kuehn, R ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b ESTONIAN UNIVERSITY OF LIFE SCIENCES   (Estonia)

Author keywords

Admixture; Bayesian inference; Contact zone; Microsatellites; Phylogeography; Stocking

Indexed keywords

CONTACT ZONE; DRAINAGE BASIN; GENE FLOW; GENETIC MARKER; GENETIC STRUCTURE; HUMAN ACTIVITY; IMMIGRANT POPULATION; INTROGRESSION; MITOCHONDRIAL DNA; RIVER SYSTEM; SALMONID;

CENTRAL EUROPE; DANUBE RIVER; ELBE RIVER; EURASIA; EUROPE; GERMANY; MAIN RIVER [GERMANY]; RHINE RIVER;

THYMALLUS THYMALLUS;

EID: 33845517054     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2006.01264.x     Document Type: Article

References (62)

1. Allendorf, F. W., Leary, R. F., Spruell, P. & Wenburg, J. K. (2001). The problems with hybrids: setting conservation guidelines. Trends in Ecology & Evolution 16, 613-622.
2. Baars, M. (2000). Charakterisierung von Äschenbiotopen (Thymallus thymallus L. 1758) und Äschenpopulationen in Bayern. PhD Dissertation, Fakultät für Landwirtschaft und Gartenbau, TU München, Germany.
3. Baars, M., Mathes, E., Stein, H. & Steinhörster, U. (2001). Die € Asche. Hohenwarsleben: Die Neue Brehm-Bücherei.
4. Bakke, T. A., Jansen, P. A. & Hansen, L. P. (1990). Differences in the host resistance of Atlantic salmon, Salmo salar L., stocks to the monogenean Gyrodactylus salaris, Malmberg, 1957. Journal of Fish Biology 37, 577-587.
5. Beaumont, M. A. & Rannala, B. (2004). The Bayesian revolution in genetics. Nature Reviews Genetics 5, 251-261.
6. Beerli, P. (2006). Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics 22, 341-345.
7. Beerli, P. & Felsenstein, J. (2001). Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of the National Academy of Sciences of the USA 98, 4563-4568.
8. Behrens, V., Rauschmayer, F. & Wittmer, H. (in press). Managing the Cormorant - a case study of failure of a European action plan to minimise the conflicts between great Cormorant and fisheries. In Proceedings of the 7th International Conference on Cormorants, Villeneuve (van Eerden, M. & Keller, V., eds).
9. Bernatchez, L. (2001). The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution 55, 351-379.
10. Bernatchez, L. & Wilson, C. C. (1998). Comparative phylogeography of Nearctic and Palearctic fishes. Molecular Ecology 7, 431-451.
11. Choisy, M., Franck, P. & Cornuet, J.-M. (2004). Estimating admixture proportions with microsatellites: comparison of methods based on simulated data. Molecular Ecology 13, 955-968.
12. Cross, M. R. (1998). One species with two biologies: Atlantic salmon (Salmo salar) in the wild and aquaculture. Canadian Journal of Fisheries and Aquatic Sciences 55 (Suppl. 1), 131-144.
13. Cowx, I. G. (2005). Interactions between Fish and Birds: Implications for Management. Oxford: Fishing News Books.
14. Dawson, K. J. & Belkhir, K. (2001). A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genetical Research 78, 59-77.
15. Duftner, N., Koblmüller, S., Weiss, S., Medgyesy, N. & Sturmbauer, C. (2005). The impact of stocking on the genetic structure of European grayling (Thymallus thymallus, Salmonidae) in two alpine rivers. Hydrobiologia 542, 121-129.
16. Englbrecht, C. C., Freyhof, J., Nolte, A., Rassmann, K., Schliewen, U. & Tautz, D. (2000). Phylogeography of the bullhead Cottus gobio (Pisces: Teleostei: Cottidae) suggests a pre-Pleistocene origin of the major central European populations. Molecular Ecology 9, 709-722.
17. Evanno, G., Regnaut, S. & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14, 2611-2620.
18. Fleming, I. A., Hindar, K., Mjolnerod, I. B., Jonsson, B., Balstad, T. & Lamberg, A. (2000). Lifetime success and interactions of farm salmon invading a native population. Proceedings of The Royal Society of London B 267, 1517-1523.
19. Fritzner, N. G., Hansen, M. M., Madsen, S. & Kristiansen, K. (2001). Use of microsatellite markers for identification of indigenous brown trout (Salmo trutta) in a geographical region heavily influenced by stocked domesticated trout. Journal of Fish Biology 58, 1197-1210.
20. Froufe, E., Knizhin, I., Koskinen, M. T., Primmer, C. R. & Weiss, S. (2003). Identification of reproductively isolated lineages of Amur grayling (Thymallus grubii Dybowski 1869): concordance between phenotypic and genetic variation. Molecular Ecology 12, 2345-2355.
21. Geist, J. & Kuehn, R. (2005). Genetic diversity and differentiation of central European freshwater pearl mussel (Margaritifera margaritifera L.) populations: implications for conservation and management. Molecular Ecology 14, 425-439.
22. Gross, R., Kühn, R., Baars, M., Schröder, W., Stein, H. & Rottmann, O. (2001). Genetic differentiation of European grayling populations across the Main, Danube and Elbe drainages in Bavaria. Journal of Fish Biology 58, 264-280.
23. Gross, R., Gum, B., Reiter, R. & Kühn, R. (2004). Genetic introgression between the Arctic charr (Salvelinus alpinus) and brook trout (S. fontinalis) in Bavarian hatchery stocks. Aquaculture International 12, 19-32.
24. Gum, B., Gross, R., Rottmann, O., Schröder, W. & Kühn, R. (2003). Microsatellite variation in Bavarian populations of European grayling (Thymallus thymallus): implications for conservation. Conservation Genetics 4, 659-672.
25. Gum, B., Gross, R. & Kuehn, R. (2005). Mitochondrial and nuclear DNA phylogeography of European grayling (Thymallus thymallus): evidence for secondary contact zones in central Europe. Molecular Ecology 14, 1707-1725.
26. Guo, S. W. & Thompson, E. A. (1992). Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 48, 361-372.
27. Hanfland, S. (2002). Stocking experiments with grayling (Thymallus thymallus) in selected rivers in Bavaria. PhD Dissertation, Fakultät Wissenschaftszentrum Weihenstephan, TU München.
28. Hänfling, B. & Brandl, R. (1998). Genetic and morphological variation in a common European cyprinid, Leuciscus cephalus within and across Central European drainages. Journal of Fish Biology 52, 706-715.
29. Hänfling, B., Bolton, P., Harley, M. & Carvalho, G. R. (2005). A molecular approach to detect hybridisation between crucian carp (Carassius carassius) and non-indigenous carp species (Carassius spp. and Cyprinus carpio). Freshwater Biology 50, 403-417.
30. Hansen, M. M. (2002). Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples. Molecular Ecology 11, 1003-1015.
31. Hansen, M. M., Hynes, R. A., Loeschcke, V. & Rasmussen, G. (1995). Assessment of the stocked or wild origin of anadromous brown trout (Salmo trutta L.) in a Danish river system, using mitochondrial DNA RFLP analysis. Molecular Ecology 4, 189-198.
32. Hansen, M. M., Ruzzante, D. E., Nielsen, E. E. & Mensberg, K.-L. D. (2001a). Brown trout (Salmo trutta) stocking impact assessment using microsatellite DNA markers. Ecological Applications 11, 148-160.
33. Hansen, M. M., Kenchington, E. & Nielsen, E. E. (2001b). Assigning individual fish to populations using microsatellite DNA markers: methods and applications. Fish and Fisheries 2, 93-112.
34. Hindar, K., Ryman, N. & Utter, F. (1991). Genetic effects of cultured fish on natural fish populations. Canadian Journal of Fisheries and Aquatic Sciences 48, 945-957.
35. Jonsson, B. (1997). A review of ecological and behavioural interactions between cultured and wild Atlantic salmon. ICES Journal of Marine Science 54, 1031-1039.
36. Koskinen, M. T., Ranta, E., Piironen, J., Veselov, A., Titov, S., Haugen, T. O., Nilsson, J., Carlstein, M. & Primmer, C. (2000). Genetic lineages and postglacial colonization of grayling (Thymallus thymallus, Salmonidae) in Europe, as revealed by mitochondrial DNA analyses. Molecular Ecology 9, 1609-1624.
37. Koskinen, M. T., Piironen, J. & Primmer, C. R. (2002). Genetic assessment of spatiotemporal evolutionary relationships and stocking effects in grayling (Thymallus thymallus, Salmonidae). Ecology Letters 5, 193-205.
38. Kotlík, P., Bogutskaya, N. G. & Ekmekcxi, F. G. (2004). Circum Black Sea phylogeography of Barbus freshwater fishes: divergence in the Pontic glacial refugium. Molecular Ecology 13, 87-96.
39. Kruskal, J. B. & Wish, M. (1977). Multidimensional Scaling. Beverly Hills, CA: Sage Publications.
40. Laird, P. W., Zijderveld, A., Linders, K., Rudnicki, M. A., Jaenisch, R. & Berns, A. (1991). Simplified mammalian DNA isolation procedure. Nucleic Acids Research 19, 4293.
41. Lynch, M. & O'Hely, M. (2001). Captive breeding and the genetic fitness of natural populations. Conservation Genetics 2, 363-378.
42. Mezzera, M. & Largiader, C. R. (2001). Comparative analysis of introgression at three marker classes: a case study in a stocked population of brown trout. Journal of Fish Biology 59, 289-305.
43. Nielsen, E. E., Hansen, M. M. & Loeschke, V. (1997). Analysis of microsatellite DNA from old scale samples of Atlantic samples: a comparison of genetic composition over sixty years. Molecular Ecology 6, 487-492.
44. Northcote, T. G. (1995). Comparative biology and management of Arctic and European grayling (Salmonidae, Thymallus). Reviews in Fish Biology 5, 141-194.
45. Ohta, T. (1982). Population genetics of multigene families. Advances in Biophysics 15, 173-179.
46. van Oosterhout, C., Weetman, W. & Hutchinson, F. (2006). Estimation and adjustment of microsatellite null alleles in nonequilibrium populations. Molecular Ecology Notes 6, 255-256.
47. Primmer, C. R., Koskinen, M. T. & Piironen, J. (2000). The one that did not get away: individual assignment using microsatellite data detects a fishing competition fraud. Proceedings of the Royal Society London B 267, 1699-1704.
48. Pritchard, J. K., Stephens, M. & Donnelly, P. J. (2000). Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
49. Ranz, J. M. & Machado, C. A. (2006). Uncovering evolutionary patterns of gene expression using microarrays. Trends in Ecology & Evolution 21, 29-37.
50. Raymond, M. & Rousset, F. (1995a). GENEPOP: population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248-249.
51. Raymond, M. & Rousset, F. (1995b). An exact test for population differentiation. Evolution 49, 1280-1283.
52. Ruzzante, D. E., Hansen, M. M., Meldrup, D. & Ebert, K. M. (2004). Stocking impact and migration pattern in an anadromous brown trout (Salmo trutta) complex: where have all the stocked spawning sea trout gone? Molecular Ecology 13, 1433-1445.
53. Staub, E., Egloff, K., Kraemer, A. & Walter, J. (1998). The effect of predation by wintering cormorants Phalacrocorax carbo on grayling Tymallus thymallus and trout (Salmonidae) populations: two case studies from Swiss rivers. Comment. Journal of Applied Ecology 35, 607-610.
54. Sušnik, S., Berrebi, P., Dovč, P., Hansen, M. M. & Snoj, A. (2004). Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785). Heredity 93, 273-282.
55. Taylor, E. B. (1991). A review of local adaptation in Salmonidae with particular reference to Pacific and Atlantic salmon. Aquaculture 98, 185-207.
56. Taylor, E. B. (2004). Evolution in mixed company: evolutionary inferences from studies of natural hybridization in Salmonidae. In Evolution Illuminated. Salmon and their Relatives (Hendry, A. P. & Stearns, S., eds), pp. 232-263. Oxford: Oxford University Press.
57. Thorfve, S. (2002). Impacts of in-stream acclimatization in post-stocking behaviour of European grayling in a Swedish stream. Fisheries Management and Ecology 9, 253-260.
58. Vasemägi, A., Gross, R., Paaver, T., Koljonen, M. L. & Nilsson, J. (2005). Extensive immigration from compensatory hatchery releases into wild Atlantic salmon population in the Baltic sea: spatio-temporal analysis over 18 years. Heredity 95, 76-83.
59. Wang, J. & Ryman, N. (2001). Genetic effects of multiple generations of supportive breeding. Conservation Biology 15, 1619-1631.
60. Weiss, S., Schlötterer, C., Waidbacher, H. & Jungwirth, M. (2001). Haplotype (mtDNA) diversity of brown trout Salmo trutta in tributaries of the Austrian Danube: massive introgression of Atlantic basin fish - by man or nature? Molecular Ecology 10, 1241-1246.
61. Wilson, G. A. & Rannala, B. (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163, 1177-1191.
62. Goudet, J. (2001). FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3). Available at http://www.unil.ch/izea/ softwares/fstat.html