Mitochondrial haplogroup M discovered in prehistoric North Americans

Journal of Archaeological Science

Volumn 34, Issue 4, 2007, Pages 642-648

  Malhi, Ripan S ^a   Kemp, Brian M ^b   Eshleman, Jason A ^b   Cybulski, Jerome ^c   Smith, David Glenn ^b,d   Cousins, Scott ^e   Harry, Harold ^e  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c Ontario History at the Canadian Museum of Civilization and Chair of the Canadian Nursing History Collection Working Group   (Canada)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e Canoe Creek Band   (Canada)

Author keywords

Ancient DNA; DNA; Molecular dating; Native American; Peopling of the Americas; Population

Indexed keywords

ARCHAEOLOGICAL EVIDENCE; GENETIC ANALYSIS; HOLOCENE; INDIGENOUS POPULATION; MITOCHONDRIAL DNA; SOCIAL HISTORY;

NORTH AMERICA;

EID: 33845480737     PISSN: 03054403     EISSN: 10959238     Source Type: Journal    
DOI: 10.1016/j.jas.2006.07.004     Document Type: Article

References (44)

1. Anderson S., Bankier A.T., Barrel B.G., DeBulin M.H.L., Coulson A.R., Drouin J., Eperon I.C., Nierlich D.P., Roe B.A., Sanger F., Schreier P.H., Smith A.J.H., Staden R., and Young I.G. Sequence and organization of the human mitochondrial genome. Nature 290 (1981) 457-465
2. Andrews R.M., Kubacka I., Chinnery P.F., Lightowlers R.N., Turnbull D.M., and Howell N. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nature Genetics 23 (1999) 147
3. Bonatto S.L., and Salzano F.M. Diversity and age of the four major mtDNA haplogroups, and their implications for the peopling of the New World. American Journal of Human Genetics 61 (1997) 1413-1423
4. Bortolini M.C., Salzano F.M., Thomas M.G., Stuart S., Nasanen S.P., Bau C.H., Hutz M.H., Layrisse Z., Petzl-Erler M.L., Tsuneto L.T., Hill K., Hurtado A.M., Castro-de-Guerra D., Torres M.M., Groot H., Michalski R., Nymadawa P., Bedoya G., Bradman N., Labuda D., and Ruiz-Linares A. Y-chromosome evidence for differing ancient demographic histories in the Americas. American Journal of Human Genetics 73 (2003) 524-539
5. Carlyle S.W., Parr R.L., Hayes M.G., and O'Rourke D.H. Context of maternal lineages in the Greater Southwest. American Journal of Physical Anthropology 113 (2000) 85-101
6. Derbeneva O.A., Sukernik R.I., Volodko N.V., Hosseini S.H., Lott M.T., and Wallace D.C. Analysis of mitochondrial DNA diversity in the Aleuts of the Commander Islands and its implications for the genetic history of Beringia. American Journal of Human Genetics 71 (2002) 415-421
7. Don R.H., Cox P.T., Wainwright B.J., Baker K., and Mattick J.S. Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Research 19 (1991) 4008
8. Eshleman J.A., Malhi R.S., and Smith D.G. Mitochondrial DNA studies of Native Americans: conceptions and misconceptions of the population prehistory of the Americas. Evolutionary Anthropology 12 (2003) 7-18
9. Forster P., Harding R., Torroni A., and Bandelt H.-J. Origin and evolution of native American mDNA variation: a reappraisal. American Journal of Human Genetics 59 (1996) 935-945
10. Gilbert M.T.P., Bandelt H.-J., Hofreiter M., and Barnes I. Assessing ancient DNA studies. Trends in Ecology and Evolution 20 (2005) 541-544
11. González-Oliver A., Marquez-Morfin L., Jimenez J.C., and Torre-Blanco A. Founding Amerindian mitochondrial DNA lineages in ancient Maya from Xcaret, Quintana Roo. American Journal of Physical Anthropology 116 (2001) 230-235
12. Hänni C., Brousseau T., Laudet V., and Stehelin D. Isopropanol precipitation removes PCR inhibitors from ancient bone extracts. Nucleic Acids Research 23 (1995) 881-882
13. Hey J. On the number of New World founders: a population genetic portrait of the peopling of the Americas. PLoS Biology 3 (2005) e193
14. Höss M., and Pääbo S. DNA extraction from Pleistocene bones by a silica-based purification methods. Nucleic Acids Research 21 (1993) 3913-3914
15. Kaestle F.A., and Smith D.G. Ancient mitochondrial DNA evidence for prehistoric population movement: the Numic expansion. American Journal of Physical Anthropology 115 (2001) 1-12
16. Kemp, B.M., Malhi, R.S., McDonough, J., Bolnick, D.A., Eshleman, J.A., Rickards, O., Martinez-Labarga, C., Johnson, J.R., Lorenz, J.G., Dixon, E.J., Fifield, T.E., Heaton, T.H., Worl, R., Smith, D.G. 2006. Genetic analysis of early Holocene skeletal remains from Alaska and its implication for the timing of the peopling of the Americas, Paper presented at the 75th Annual Meeting of the American Association of Physical Anthropologists, Anchorage, AK
17. Kemp, B.M., Monroe, C., Smith, D.G. Repeat silica extraction: a simple technique for the removal of PCR inhibitors from DNA extracts. Journal of Archaeological Science, E-pub ahead of print 2 May, in press.
18. Kemp B.M., Resendez A., Román Berrelleza J.A., Malhi R.S., and Smith D.G. An analysis of ancient Aztec mtDNA from Tlatelolco: pre-Columbian relations and the spread of Uto-Aztecan. In: Reed D.M. (Ed). Biomolecular Archaeology: Genetic Approaches to the Past (2005), Southern Illinois University, Carbondale, IL 22-46
19. Kemp B.M., and Smith D.G. Use of bleach to eliminate contaminating DNA from the surfaces of bones and teeth. Forensic Science International 154 (2005) 53-61
20. Kivisild T., Tolk H.V., Parik J., Wang Y., Papiha S.S., Bandelt H.J., and Villems R. The emerging limbs and twigs of the East Asian mtDNA tree. Molecular Biology and Evolution 19 (2002) 1737-1751
21. Kolman C.J., Sambuughin N., and Bermingham E. Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142 (1996) 1321-1334
22. Lalueza C., Perezperez A., Prats E., Cornudella L., and Turbon D. Lack of founding Amerindian mitochondrial DNA lineages in extinct Aborigines from Tierra Del Fuego Patagonia. Human Molecular Genetics 6 (1997) 41-46
23. Lindahl T. Instability and decay of the primary structure of DNA. Nature 362 (1993) 709-715
24. Malhi R.S., Eshleman J.A., Greenberg J.A., Weiss D.A., Schultz Shook B.A., Kaestle F.A., Lorenz J.G., Kemp B.M., Johnson J.R., and Smith D.G. The structure of diversity within the New World mitochondrial DNA haplogroups: implications for the prehistory of North America. American Journal of Human Genetics 70 (2002) 905-919
25. Merriwether D.A., Chinwalla N., Hall W.W., and Ferrell R.E. Mitochondrial DNA RFLP and D-loop sequence variation among Mongolians indicate Mongolia was a potential source for the founding population of the New World. American Journal of Physical Anthropology Supplement 20 (1995) 152-153
26. Merriwether D.A., Rothhammer F., and Ferrell R.E. Distribution of the four founding lineage haplotypes in native Americans suggests a single wave of migration for the New World. American Journal of Physical Anthropology 98 (1995) 411-430
27. Pääbo S. Amplifying ancient DNA. In: Innis M.A. (Ed). PCR Protocols: A Guide to Methods and Applications (1990), Academic Press, San Diego 159-166
28. Parr R.L., Carlyle S.W., and O'Rourke D.H. Ancient DNA analysis of Fremont Amerindians of the Great Salt Lake Wetlands. American Journal of Physical Anthropology 99 (1996) 507-518
29. Rickards O., Martinez-Labarga C., Lum J.K., De Stefano G.F., and Cann R.L. mtDNA history of the Cayapa Amerinds of Ecuador: detection of additional founding lineages for the native American populations. American Journal of Human Genetics 65 (1999) 519-530
30. Rosenberg N.A., Pritchard J.K., Weber J.L., Cann H.M., Kidd K.K., Zhivotovsky L.A., and Feldman M.W. Genetic structure of human populations. Science 298 (2002) 2381-2385
31. Salamon M., Tuross N., Arensburg B., and Weiner S. Relatively well preserved DNA is present in the crystal aggregates of fossil bones. Proceedings of the National Academy of Sciences USA 102 (2005) 13783-13788
32. Schurr T.G., Ballinger S.W., Gan Y.-Y., Hodge J.A., Merriwether D.A., Lawrence D.N., Knowler W.C., Weiss K.M., and Wallace D.C. Amerindian mitochondrial DNAs have rare Asian mutations at high frequencies, suggesting they derived from four primary maternal lineages. American Journal of Human Genetics 46 (1990) 613-623
33. Shimada I., Shinoda K.-i., Farnum J., Corruccini R., and Wantanbe H. An integrated analysis of pre-Hispanic mortuary practices: a Middle Sicán case study. Current Anthropology 45 (2004) 369-402
34. Starikovskaya E.B., Sukernik R.I., Derbeneva O.A., Volodko N.V., Ruiz-Pesini E., Torroni A., Brown M.D., Lott M.T., Hosseini S.H., Huoponen K., and Wallace D.C. Mitochondrial DNA diversity in indigenous populations of the southern extent of Siberia, and the origins of Native American haplogroups. Annals of Human Genetics 69 (2005) 67-89
35. Stone A.C., and Stoneking M. Ancient DNA from a pre-Columbian Amerindian population. American Journal of Physical Anthropology 92 (1993) 463-471
36. Stone A.C., and Stoneking M. Genetic analysis of an 8000 year-old Native American Skeleton. Ancient Biomolecules 1 (1996) 83-87
37. Stone A.C., and Stoneking M. mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. American Journal of Human Genetics 62 (1998) 1153-1170
38. Tarazona-Santos E., Carvalho-Silva D.R., Pettener D., Luiselli D., De Stefano G.F., Labarga C.M., Rickards O., Tyler-Smith C., Pena S.D., and Santos F.R. Genetic differentiation in South Amerindians is related to environmental and cultural diversity: evidence from the Y chromosome. American Journal of Human Genetics 68 (2001) 1485-1496
39. Torroni A., Schurr T.G., Cabell M.F., Brown M.D., Neel J.V., Larsen M., Smith D.G., Vullo C.M., and Wallace D.C. Asian affinities and continental radiation of the four founding Native American mtDNAs. American Journal of Human Genetics 53 (1993) 563-590
40. Ward R.H., Frazier B.L., Dew-Jager K., and Pääbo S. Extensive mitochondrial diversity within a single Amerindian tribe. Proceedings of the National Academy of Sciences USA 88 (1991)
41. Watt, K.E., 2005. Deconamination techniques in ancient DNA analysis, MA thesis, Department of Archaeology, Simon Fraser Univerisity.
42. Wrischnik L.A., Higuchi R.G., Stoneking M., and Erlich H.A. Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA. Nucleic Acids Research (1987) 529-542
43. Yao Y.G., Kong Q.P., Bandelt H.J., Kivisild T., and Zhang Y.P. Phylogeographic differentiation of mitochondrial DNA in Han Chinese. American Journal of Human Genetics 70 (2002) 635-651
44. Zegura S.L., Karafet T.M., Zhivotovsky L.A., and Hammer M.F. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Molecular Biology and Evolution 21 (2004) 164-175