메뉴 건너뛰기




Volumn 11, Issue 11, 2006, Pages 915-928

Improving the quality of published chemical names with nomenclature software

Author keywords

Chemical nomenclature; Nomenclature software; Systematic chemical names in scientific publications

Indexed keywords

ORGANIC COMPOUND;

EID: 33845465231     PISSN: 14203049     EISSN: 14203049     Source Type: Journal    
DOI: 10.3390/11110915     Document Type: Article
Times cited : (41)

References (45)
  • 1
    • 4344669742 scopus 로고    scopus 로고
    • The need for systematic naming software tools for exchange of chemical information
    • Williams, A.; Yerin, A. The need for systematic naming software tools for exchange of chemical information. Molecules 1999, 4, 255-263.
    • (1999) Molecules , vol.4 , pp. 255-263
    • Williams, A.1    Yerin, A.2
  • 6
    • 0003955767 scopus 로고
    • International Union of Pure and Applied Chemistry (IUPAC); Organic Chemistry Division, Commision on Nomenclature of Organic Chemistry (III.1). Panico, R.; Powell, W. H.; Richer, J. C.; Ed.; Blackwell Science: Oxford
    • International Union of Pure and Applied Chemistry (IUPAC); Organic Chemistry Division, Commision on Nomenclature of Organic Chemistry (III.1). A Guide to IUPAC Nomenclature of Organic Compounds: Recommendations 1993; Panico, R.; Powell, W. H.; Richer, J. C.; Ed.; Blackwell Science: Oxford, 1993;
    • (1993) A Guide to IUPAC Nomenclature of Organic Compounds: Recommendations 1993
  • 7
    • 33845419497 scopus 로고
    • [Chem. Abstr. 1994, 120, 297652].
    • (1994) Chem. Abstr. , vol.120 , pp. 297652
  • 8
    • 18944403502 scopus 로고    scopus 로고
    • Corrections to a guide to IUPAC nomenclature of organic compounds (IUPAC recommendations 1993)
    • Favre, H. A.; Hellwich, K.-H.; Moss, G. P.; Powell, W. H.; Traynham, J. G. Corrections to a guide to IUPAC nomenclature of organic compounds (IUPAC recommendations 1993). Pure Appl. Chem. 1999, 71, 1327-1330.
    • (1999) Pure Appl. Chem. , vol.71 , pp. 1327-1330
    • Favre, H.A.1    Hellwich, K.-H.2    Moss, G.P.3    Powell, W.H.4    Traynham, J.G.5
  • 10
    • 0036314538 scopus 로고    scopus 로고
    • Phane nomenclature. Part II. Modification of the degree of hydrogenation and substitution derivatives of phane parent hydrides (IUPAC recommendations 2002)
    • Favre, H. A.; Hellwinkel, D.; Powell, W. H.; Smith, H. A., Jr.; Tsay, S. S.-C. Phane nomenclature. Part II. Modification of the degree of hydrogenation and substitution derivatives of phane parent hydrides (IUPAC recommendations 2002). Pure Appl. Chem. 2002, 74, 809-834.
    • (2002) Pure Appl. Chem. , vol.74 , pp. 809-834
    • Favre, H.A.1    Hellwinkel, D.2    Powell, W.H.3    Smith Jr., H.A.4    Tsay, S.S.-C.5
  • 12
    • 33845459155 scopus 로고    scopus 로고
    • Nomenclature for Rotaxanes
    • Submitted to. [Provisional Recommendations, IUPAC]. (accessed in October, 2006)
    • Yerin, A.; Metanomski, W. V.; Moss, G. P.; Wilks, E. S.; Harada, A. Nomenclature for Rotaxanes. Submitted to Pure Appl. Chem. [Provisional Recommendations, IUPAC]. http://ibiblio.lsu.edu/main/iupac/reports/provisional/ abstract05/yerin_300406.html (accessed in October, 2006).
    • Pure Appl. Chem.
    • Yerin, A.1    Metanomski, W.V.2    Moss, G.P.3    Wilks, E.S.4    Harada, A.5
  • 13
    • 5244295088 scopus 로고
    • Systematic chemical nomenclatures in the computer age
    • Kirby, G. H.; Polton, D. J. Systematic chemical nomenclatures in the computer age. J. Chem. Inf. Comput. Sci. 1993, 33, 560-563.
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 560-563
    • Kirby, G.H.1    Polton, D.J.2
  • 16
    • 14344281952 scopus 로고
    • Chemico-linguistics: Computer translation of chemical nomenclature
    • Garfield, E. Chemico-linguistics: computer translation of chemical nomenclature. Nature 1961, 192, 192-194.
    • (1961) Nature , vol.192 , pp. 192-194
    • Garfield, E.1
  • 17
    • 5244335623 scopus 로고
    • AUTONOM: System for computer translation of structural diagrams into IUPAC-compatible names. 1. General design
    • Wisniewski, J. L. AUTONOM: system for computer translation of structural diagrams into IUPAC-compatible names. 1. General design. J. Chem. Inf. Comput. Sci. 1990, 30, 324-32.
    • (1990) J. Chem. Inf. Comput. Sci. , vol.30 , pp. 324-332
    • Wisniewski, J.L.1
  • 18
    • 33751500724 scopus 로고
    • AUTONOM: System for computer translation of structural diagrams into IUPAC-compatible names. 2. Nomenclature of chains and rings
    • Goebels, L.; Lawson, A. J.; Wisniewski, J. L. AUTONOM: system for computer translation of structural diagrams into IUPAC-compatible names. 2. Nomenclature of chains and rings. J. Chem. Inf. Comput. Sci. 1991, 31, 216-25.
    • (1991) J. Chem. Inf. Comput. Sci. , vol.31 , pp. 216-225
    • Goebels, L.1    Lawson, A.J.2    Wisniewski, J.L.3
  • 19
    • 33845383010 scopus 로고    scopus 로고
    • Digital naming of organic compounds: On some successful algorithms
    • Wisniewski, J. L. Digital naming of organic compounds: on some successful algorithms. Hypernews 1997, 2, 22-29.
    • (1997) Hypernews , vol.2 , pp. 22-29
    • Wisniewski, J.L.1
  • 20
    • 33845381836 scopus 로고    scopus 로고
    • San Leandro CA, USA
    • ISIS Draw 2.5 with AutoNom 2000, MDL Information Systems, Inc.: San Leandro CA, USA, www.mdl.com, 2002.
    • (2002) ISIS Draw 2.5 with AutoNom 2000
  • 21
    • 33845408515 scopus 로고    scopus 로고
    • Cambridge MA, USA
    • ChemDraw Ultra 10.0, CambridgeSoft Corporation: Cambridge MA, USA, www.cambridgesoft.com, 2005.
    • (2005) ChemDraw Ultra 10.0
  • 22
    • 33845468695 scopus 로고    scopus 로고
    • Toronto ON, Canada
    • ACD/Name, version 9.08, Advanced Chemistry Development, Inc.: Toronto ON, Canada, www.acdlabs.com, 2006.
    • (2006) ACD/Name, Version 9.08
  • 23
    • 33845388901 scopus 로고    scopus 로고
    • Philadelphia PA, USA
    • IUPAC NameIt, Bio-Rad Laboratories: Philadelphia PA, USA, www.bio-rad.com.
    • IUPAC NameIt
  • 24
    • 33845397499 scopus 로고    scopus 로고
    • Santa Fe NM, USA
    • Lexichem, version 1.5, OpenEye Scientific Software, Inc.: Santa Fe NM, USA, www.eyesopen.com, 2006.
    • (2006) Lexichem, Version 1.5
  • 25
    • 33845468247 scopus 로고    scopus 로고
    • San Diego, CA, USA
    • Nomenclator, ChemInnovation Software, Inc.: San Diego, CA, USA, www.cheminnovation.com, 2006.
    • (2006) Nomenclator
  • 26
    • 5444223697 scopus 로고    scopus 로고
    • Personal experience with four kinds of chemical structure drawing software: Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch
    • Li, Z.; Wan, H.; Shi, Y.; Ouyang, P. Personal experience with four kinds of chemical structure drawing software: review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch. J. Chem. Inf. Comput. Sci. 2004, 44, 1886-1890.
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1886-1890
    • Li, Z.1    Wan, H.2    Shi, Y.3    Ouyang, P.4
  • 27
    • 0037386674 scopus 로고    scopus 로고
    • Valenzen, Bindungen und Orbitale - Struktureditoren
    • Engel, T. Valenzen, Bindungen und Orbitale - Struktureditoren. Nachr. Chem. 2003, 51, 450-453.
    • (2003) Nachr. Chem. , vol.51 , pp. 450-453
    • Engel, T.1
  • 28
    • 26944474818 scopus 로고    scopus 로고
    • Chemistry Software Package ChemOffice Ultra 2005
    • Zielesny, A. Chemistry Software Package ChemOffice Ultra 2005. J. Chem. Inf. Model. 2005, 45, 1474-1477.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 1474-1477
    • Zielesny, A.1
  • 29
    • 26944496073 scopus 로고    scopus 로고
    • Software Review: ChemOffice 2005 Pro by CambridgeSoft
    • Irwin, J. J. Software Review: ChemOffice 2005 Pro by CambridgeSoft. J. Chem. Inf. Model. 2005, 45, 1469.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 1469
    • Irwin, J.J.1
  • 30
    • 10044271187 scopus 로고    scopus 로고
    • ChemDraw 8 Ultra, Windows and Macintosh Versions
    • Mendelsohn, L. D. ChemDraw 8 Ultra, Windows and Macintosh Versions. J. Chem. Inf. Comput. Sci. 2004, 44, 2225-2226.
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 2225-2226
    • Mendelsohn, L.D.1
  • 31
    • 33845422448 scopus 로고    scopus 로고
    • IUPAC Name Pro 4.5 with Name to Structure Module
    • Selliah, R. D. IUPAC Name Pro 4.5 with Name to Structure Module. J. Am. Chem. Soc. 2001, 123, 6463.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 6463
    • Selliah, R.D.1
  • 32
    • 0034191666 scopus 로고    scopus 로고
    • Nomenklatur in der Chemie: The next generation
    • Koch, R.; Lemmler, M. Nomenklatur in der Chemie: The next generation. Nachr. Chem. 2000, 48, 642-646.
    • (2000) Nachr. Chem. , vol.48 , pp. 642-646
    • Koch, R.1    Lemmler, M.2
  • 33
    • 17044363623 scopus 로고    scopus 로고
    • Chemische Nomenklatur per Mausklick
    • Vogt, J. Chemische Nomenklatur per Mausklick. Nachr. Chem. 2005, 53, 428-431.
    • (2005) Nachr. Chem. , vol.53 , pp. 428-431
    • Vogt, J.1
  • 34
    • 33845421561 scopus 로고    scopus 로고
    • note
    • For the latter two journals the 2005 issues had not been fully indexed by the CAS when this work was started.
  • 36
    • 30844443282 scopus 로고    scopus 로고
    • Molecular similarity and diversity in chemoinformatics: From theory to applications
    • Maldonado, A. G.; Doucet, J. P.; Petitjean, M.; Fan, B.-T. Molecular similarity and diversity in chemoinformatics: From theory to applications. Mol. Diversity 2006, 10, 39-79.
    • (2006) Mol. Diversity , vol.10 , pp. 39-79
    • Maldonado, A.G.1    Doucet, J.P.2    Petitjean, M.3    Fan, B.-T.4
  • 37
    • 33845443962 scopus 로고    scopus 로고
    • note
    • 'Struct=Name' is a new proprietary algorithm that replaces the AutoNom one used in earlier versions of ChemDraw.
  • 38
    • 33845398892 scopus 로고    scopus 로고
    • note
    • 'Use Retained Replacements', 'Advanced Enclosing Marks', No 'Forward Locants Position', Hantzsch-Widman New Stems', 'Extended Fused List', No 'New Functional Groups Names', 'Stereoconfiguration: Absolute', no 'Stereo Wedge Direction', no 'Name Preferred Tautomeric Form', 'Refuse To Name: Fused Multiparent Systems, Complex Bridged Fused Systems', Complex Multiplicative Structures', 'Use Biochemical Names: Steroids, Alkaloids, Terpenes, Carbohydrates, Amino Acids, Peptides', 'Select Language: English'. For both nomenclature tools 'Capitalization First Letter of Name'' was chosen and for ACD/Name Index [31] 'Name Preferred Tautomeric Form' was enabled.
  • 39
    • 33845454109 scopus 로고    scopus 로고
    • note
    • ACD/Labs has developed its naming algorithms alone and calls the CAS-like names 'Index names'.
  • 40
    • 33646241042 scopus 로고    scopus 로고
    • SciFinder Scholar 2006: An Empirical Analysis of Research Topic Query Processing
    • Wagner, B. A. SciFinder Scholar 2006: An Empirical Analysis of Research Topic Query Processing. J. Chem. Inf. Model. 2006, 46, 767-774.
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 767-774
    • Wagner, B.A.1
  • 41
    • 0001720136 scopus 로고
    • Spezifikation der molekularen Chiralität
    • Cahn, R. S.; Ingold, C. K.; Prelog, V. Spezifikation der molekularen Chiralität. Angew. Chem. 1966, 78, 413-447;
    • (1966) Angew. Chem. , vol.78 , pp. 413-447
    • Cahn, R.S.1    Ingold, C.K.2    Prelog, V.3
  • 43
    • 0043223619 scopus 로고    scopus 로고
    • Name=Struct: A Practical Approach to the Sorry State of Real-Life Chemical Nomenclature
    • Brecher, J. Name=Struct: A Practical Approach to the Sorry State of Real-Life Chemical Nomenclature. J. Chem. Inf. Comput. Sci. 1999, 39, 943-950.
    • (1999) J. Chem. Inf. Comput. Sci. , vol.39 , pp. 943-950
    • Brecher, J.1
  • 44
    • 84935093576 scopus 로고    scopus 로고
    • Nomenclature of fused and bridged fused ring systems
    • Moss, G. P. Nomenclature of fused and bridged fused ring systems. Pure Appl. Chem. 1998, 70, 43-216.
    • (1998) Pure Appl. Chem. , vol.70 , pp. 43-216
    • Moss, G.P.1
  • 45
    • 33845457565 scopus 로고    scopus 로고
    • Pegnitz, Germany. ScienceServe is the local ACD distributor for Germany, Austria, and Switzerland
    • ScienceServe GmbH, Pegnitz, Germany (www.scienceserve.com). ScienceServe is the local ACD distributor for Germany, Austria, and Switzerland.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.