Molecular marker diversity of SCN-resistant sources in soybean

Genome

Volumn 49, Issue 8, 2006, Pages 938-949

  Chen, Yiwu ^a   Wang, Dechun ^a   Arelli, Prakash ^b   Ebrahimi, Mohsen ^a   Nelson, Randall L ^c  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b USDA ARS Mid South Area   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Cluster analysis; Genetic diversity; Soybean; Soybean cyst nematode resistance; SSR markers

Indexed keywords

ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; CLASSIFICATION; GENE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; NEMATODE; PARASITOLOGY; PATHOGENICITY; PLANT DISEASE; SOYBEAN; TANDEM REPEAT;

ANALYSIS OF VARIANCE; ANIMALS; GENES, PLANT; GENETIC MARKERS; PLANT DISEASES; SOYBEANS; TANDEM REPEAT SEQUENCES; TYLENCHOIDEA; VARIATION (GENETICS);

GLYCINE MAX; HETERODERA GLYCINES;

EID: 33845432869     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G06-057     Document Type: Article

References (48)

1. Anand, S.C. 1992. Registration of 'Hartwig' soybean. Crop Sci. 32: 1069-1070.
2. Anand, S.C., and Gallo, K.M. 1984. Identification of additional soybean germplasm with resistance to race 3 of the soybean cyst nematode. Plant Dis. 68: 593-595.
3. Anand, S.C., Wrather, J.A., and Shumway C.R. 1985. Soybean genotypes with resistance to races of soybean cyst nematode. Crop Sci. 25: 1073-1075.
4. Anand, S.C., Gallo, K.M., Baker, I.A., and Hartwig, E.E. 1988. Soybean plant introductions with resistance to races 4 or 5 of soybean cyst nematode. Crop Sci. 28: 563-564.
5. Anderson, J.A., Churchill, G.A., Autrique, J.E., Tanksley, S.D., and Sorrells, M.E. 1992. Optimizing parental selection for genetic linkage maps. Genome, 36:181-186.
6. Arelli, P.R., Anand, S.C., and Wrather, J.A. 1992. Soybean resistance to soybean cyst nematode race 3 is conditioned by an additional dominant gene. Crop Sci. 32: 862-864.
7. Arelli, P.R., Wilcox, J.A., Myers, O., Jr., and Gibson, P.T. 1997. Soybean germplasm resistant to races 1 and 2 of Heterodera glycines. Crop Sci. 37: 1367-1369.
8. Arelli, P.R., Sleper, D.A., Yue, P., Wilcox, J.A., and Yue, P. 2000. Soybean reaction to races 1 and 2 of Heterodera glycines. Crop Sci. 40: 824-826.
9. Belaj, A., Catovi, Z., Rallo, L., and Trujillo, I. 2002. Genetic diversity and relationships in olive (Olea europaea L.) germplasm collections as determined by randomly amplified polymorphic DNA. Theor. Appl. Genet. 105: 638-644.
10. Bernard, R.L., Juvik, G.A. and Nelson, R.L. 1987. USDA Soybean germplasm collection inventory. Vol. 1. Intl. Agric. Publ. INTSOY Ser. 30. International Agriculture Publications, University of Illinois at Urbana-Champaign.
11. Buss, G.R., Camper, H.M., Roane, J.R., and Roane, C.W. 1988. Registration of 'Hutcheson' soybean. Crop Sci. 28: 1024-1025.
12. Chen, Y., and Nelson, R.L. 2004. Genetic variation and relationships among cultivated, wild, and semi-wild soybean. Crop Sci. 44: 316-326.
13. Chen, Y., and Nelson, R.L. 2005. Relationship between origin and genetic diversity in Chinese soybean germplasm. Crop Sci. 45: 1645-1652.
14. Concibido, V.C., Denny, R.L., Lange, D.A., Orf, J.H., and Young, N.D. 1996. RFLP mapping and marker-assisted selection of soybean cyst nematode resistance in PI 209332. Crop Sci. 36: 1643-1650.
15. Concibido, V.C., Lange, D.A., Denny, R.L., Orf, J.H., and Young, N.D. 1997. Genome mapping of soybean cyst nematode resistance genes in eking PI 90763, and PI 88788 using DNA markers. Crop Sci. 37: 258-264.
16. Cornelious, B., Chen P., Chen, Y., de Leon, N., Shannon, J.G., and Wang, D. 2005. Identification of QTLs underlying water-logging tolerance in soybean. Mol. Breed. 16: 103-112.
17. Diers, B.W., Skorupska, H.T., Arelli, P.R., and Cianzo, S.R. 1997. Genetic relationships among plant introductions with resistance to soybean cyst nematodes. Crop Sci. 37: 1966-1972.
18. Diwan, N., and Cregan, P.B. 1997. Automated sizing of fluorescent labeled simple sequence repeat markers to assay genetic variation in soybean. Theor. Appl. Genet. 95: 723-733.
19. Epps, J.M., and Hartwig, E.E. 1972. Reaction of soybean varieties and strains to Race 4 of the soybean cyst nematode. J. Nematol. 4: 222.
20. Ercan, A.G., Taskin, M., and Turgut, K. 2004. Analysis of genetic diversity in Turkish sesame (Sesamum indicum L.) populations using RAPD markers. Genet. Res. Crop Evol. 51: 599-1007.
21. Excoffier, L., Smouse, P.E., and Quattro, J.M. 1992. Analysis of molecular variance inferred from metric distance among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genet. 131: 479-491.
22. Excoffier, L., Laval, G., and Schneider, S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online, 1: 47-50.
23. Johnson, H.W. 1960a. Registration of soybean varieties, VII: Hill (Reg. No. 28). Agron. J. 52: 659-560.
24. Johnson, H.W. 1960b. Registration of soybean varieties, VII: Hood (Reg. No. 30). Agron. J. 52: 660.
25. Kisha, T., Sneller, C.H., and Diers, B.W. 1997. Relationship between genetic distance among parents and genetic variance in populations of soybean. Crop Sci. 37: 1317-1325.
26. Li, Z., and Nelson, R.L. 2002. RAPD marker diversity among cultivated and wild soybean accessions from four Chinese provinces. Crop Sci. 42: 1737-1744
27. Morse, W.J., and Cartter, J.L. 1939. Soybeans: culture and varieties. US Department of Agriculture, Farmers Bulletin No. 1520. p. 8.
28. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, N.Y.
29. Niblack, T.L., Arelli, P.R., Noel, G.R., Opperman, C.H., Orf, J.H., Schmitt, D.P., Shannon, J.G., and Tylka, G.L. 2002. A revised classification scheme for genetically diverse populations of Heterodera glycines. J. Nematol. 34: 279-288.
30. Nickell, C.D., Noel, G.R., Cary, T.R., Thomas, D.J., and Leitz, R.A. 1999. Registration of 'Ina' soybean. Crop Sci. 39: 1533.
31. Nickell, C.D., Noel, G.R., Cary, T.R., Thomas, D.J., and Diers, B.W. 2001. Registration of 'Loda' soybean. Crop Sci. 41: 589-590.
32. Rao Arelli, A.P., Wilcox, J.A., Myers, O., and Gibson, P.T. 1997. Soybean germplasm resistant to races 1 and 2 of Heterodera glycines. Crop Sci. 37: 1367-1369.
33. Reif, J.C., Melchinger, A.E., Xia, X.C., Warburton, M.L., Hoisington, D.A., Vasal, S.K., et al. 2003. Genetic distance based on simple sequence repeats and heterosis in tropical maize populations. Crop Sci. 43:1275-1282.
34. Ross, J.P., and Brim, C.A. 1957. Resistance of soybean to the soybean cyst nematode as identified by a double-row method. Plant Dis. Rep. 41: 923-924.
35. SAS Institute Inc. 1999. SAS/STAT user's Guide. Version 8.0 [computer program]. SAS Institute, Inc., Cary, N.C.
36. Shepard, R.N. 1974. Representation of structure in similarity data: problems and prospects. Psycometrika, 39: 373-421.
37. Skorupska, H.T., Choi, I.S., Arelli, P.R., and Bridges, W.C. 1994. Resistance to soybean cyst nematode and molecular polymorphism in various sources of Peking soybean. Euphytica, 75: 63-70.
38. Smith, T.J., and Camper, H.M. 1973. Registration of Essex soybean. Crop Sci. 13: 495.
39. Song, Q.J., Marek, L.F., Shoemaker, R.C., Lark, K.G., Concibido, V.C., Delannay, X., Specht, J.E., and Cregan, P.B. 2004. A new integrated genetic linkage map of the soybean. Theor. Appl. Genet. 109: 122-128.
40. Wang, D., Arelli, P., Shoemaker, R.C., and Diers, B.W. 2001. Loci underlying resistance to race 3 of soybean cyst nematode in Glycine soja plant introduction 468916. Theor. Appl. Genet. 103: 561-566.
41. Wang, D., Shi, J., Carlson, S.R., Cregan, P.B., Ward, R.W., and Diers, B.W. 2003. A low-cost and high-throughput system for high-resolution genotyping with microsatellite DNA markers. Crop Sci. 43: 1828-1832.
42. Webb, D.M., Baltazar, B., Arelli, P.R., Schupp, J., Clayton, J., Keim, P., and Beavis, W.D. 1995. Genetic mapping of soybean cyst nematode Race 3 resistance loci in the soybean PI 437654. Theor. Appl. Genet. 91: 574-581.
43. Weiss, M.G., and Stevenson, T.M. 1955. Registration of soybean varieties, V: Dorman (Reg. No. 15). Agron. J. 47: 541-543.
44. Xie, M., Arelli, P.R., and Sleper, D.A. 1998. Genetic relationships among soybean plant introductions with resistance to Heterodera glycines using RFLP's. Soybean Genet. Newslett. 25: 157-159.
45. Young, L.D. 1990. Soybean germplasm evaluated for resistance to races 3, 5, and 14 of soybean cyst nematode. Crop Sci. 30: 735-736.
46. Young, L.D. 1995. Soybean germplasm resistant to races 3, 5, or 14 of soybean cyst nematode. Crop Sci. 35: 895-896.
47. Zhang, J., Arelli, P.R., Sleper, D.A., Qiu, B.X., and Ellersieck, M.R. 1999. Genetic diversity of soybean germplasm resistant to Heterodera glycines. Euphytica, 107: 205-216.
48. Zhang, D.P., Cervantes, J., Huaman, Z., Carey, E., and Ghislain, M. 2004. Assessing genetic diversity of sweet potato (Ipomoea batatas (L.) Lam.) cultivars from tropical America using AFLP. Genet. Res. Crop Evol. 47: 659-665.