A proposal for a gene functions wiki

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4277 LNCS - I, Issue , 2006, Pages 669-678

  Hoehndorf, Robert ^a,b   Prüfer, Kay ^b   Backhaus, Michael ^a,b   Herre, Heinrich ^a   Kelso, Janet ^b   Loebe, Frank ^a   Visagie, Johann ^b  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SOFTWARE; DATA MINING; MATHEMATICAL MODELS; SEMANTICS;

AUTOMATED REASONING; COMMUNITY COLLABORATION; ONLINE ENCYCLOPEDIA;

KNOWLEDGE BASED SYSTEMS;

EID: 33845418376     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11915034_91     Document Type: Conference Paper

References (33)

1. Chicurel, M.: Bioinformatics: bringing it all together. Nature 419(6908) (2002) 751-755
2. Birney, E., et al.: Ensembl 2006. Nucleic Acids Res 34(Database issue) (2006) 556-561
3. Wheeler, D.L., et al.: Database resources of the national center for biotechnology information. Nucleic Acids Res 34(Database issue) (2006) 173-180
4. The Gene Ontology Consortium: Gene ontology: tool for the unification of biology. Nat Genet 25(1) (2000) 25-29
5. Wang, K.: Gene-function wiki would let biologists pool worldwide resources. Nature 439(7076) (2006) 534
6. The Internet Community: Wikipedia, the free encyclopedia, http://wikipedia.org (2006)
7. Giles, J.: Internet encyclopaedias go head to head. Nature 438 (2005) 900-901
8. Auer, S.: Powl - a web based platform for collaborative semantic web development. In: Proc. of 1st Workshop Workshop Scripting for the Semantic Web (SFSW'05). (2005)
9. Fischer, J., Gantner, Z., Rendle, S., Stritt, M., Schmidt-Thieme, L.: Semantic wiki COW. http://www.informatik.uni-freiburg.de/cgnm/software/cow/ index_en.html (2006)
10. Völkel, M., Krötzsch, M., Vrandecic, D., Haller, H., Studer, R.: Semantic wikipedia. In: Proceedings of the 15th international conference on World Wide Web. (2006) 585-594
11. Harris, D., Harris, N.: Kendra base, http://base.kendra.org.uk/ (2006)
12. Dello, K., Tolksdorf, R., Paslaru, E.: Makna. http://www.apps.ag-nbi.de/ makna/(2006)
13. Campanini, S.E., Castagna, P., Tazzoli, R.: Platypus wiki: a semantic wiki wiki web. In: Semantic Web Applications and Perspectives, Proceedings of 1st Italian Semantic Web Workshop. (2004)
14. Bard, J., Rhee, S.Y., Ashburner, M.: An ontology for cell types. Genome Biol 6(2) (2005) R21
15. Burek, P., Hoehndorf, R., Loebe, F., Visagie, J., Herre, H., Kelso, J.: A top-level ontology of functions and its application in the Open Biomedical Ontologies. Bioinformatics 22(14) (2006) e66-e73
16. Burek, P.: Ontology of Functions. PhD thesis, Institute of Informatics (IfI), University of Leipzig (2006) forthcoming.
17. Hoehndorf, R., Prüfer, K., Backhaus, M., Visagie, J., Kelso, J.: The design of a wiki-based curation system for the ontology of functions. In: The Joint BioLINK and 9th Bio-Ontologies Meeting. (2006)
18. Horrocks, I., Patel-Schneider, P.F.: Reducing OWL entailment to description logic satisfyability. In: Proc. ISWC 2003. Number 2870 in LNCS. Springer (2003) 17-29
19. Devlin, K.: Logic and Information. Cambridge University Press (1991)
20. Group, O.M.: UML 2.0 infrastructure specification. Document ptc/03-09-15 (2004)
21. Pepper, S., Moore, G.: XML topic maps (XTM) 1.0. http://topicmaps.0rg/ xtm/1.0/(2001)
22. Garshol, L.M., Moore, G.: Topic maps - XML syntax, http://www. isotopicmaps.org/sam/sam-xtm/ (2006)
23. Loebe, F.: An analysis of roles: Towards ontology-based modelling. Master's thesis, Institute of Informatics (IfI), University of Leipzig (2003)
24. Loebe, F.: Abstract vs. social roles: A refined top-level ontological analysis. In Boella, G., Odell, J., van der Torre, L., Verhagen, H., eds.: Proceedings of the 2005 AAAI Fall Symposium 'Roles, an Interdisciplinary Perspective: Ontologies, Languages, and Multiagent Systems', Nov 3-6, Arlington, Virginia. Number FS-05-08 in Fall Symposium Series Technical Reports, Menlo Park (California), AAAI Press (2005) 93-100
25. Rector, A., Stevens, R., Rogers, J.: Simple bio upper ontology, http://www.cs.man.ac.uk/~rector/ontologies/simple-top-bio/ (2006)
26. Loebe, F., Hoehndorf, R.: General Formal Ontology. https://savannah. nongnu.org/projects/gfo/ (2006)
27. Vrandecic, D., Krötzsch, M.: Reusing ontological background knowledge in semantic wikis. In Völkel, M., Schaffert, S., Decker, S., eds.: Proceedings of the First Workshop on Semantic Wikis - From Wikis to Semantics. (2006)
28. Herre, H., Heller, B., Burek, P., Hoehndorf, R., Loebe, F., Michalek, H.: General Formal Ontology (GFO) - a foundational ontology integrating objects and processes. Onto-Med Report 8, University of Leipzig (2006)
29. Masolo, C., Guizzardi, G., Vieu, L., Bottazzi, E., Ferrario, R.: Relational roles and qua-individuals. In Boella, G., Odell, J., van der Torre, L., Verhagen, H., eds.: Proceedings of the 2005 AAAI Fall Symposium 'Roles, an Interdisciplinary Perspective: Ontologies, Languages, and Multiagent Systems', Nov 3-6, Arlington, Virginia. Number FS-05-08 in Fall Symposium Series Technical Reports, Menlo Park (California), AAAI Press (2005) 103-112
30. Straccia, U.: A fuzzy description logic. In: Proceedings of AAAI-98, 15th Conference of the American Association for Artificial Intelligence, Madison, US (1998)
31. Wikipedia: Web of trust - wikipedia, the free encyclopedia (2006) [Online; accessed 19-August-2006].
32. Wikipedia: Wikipedia:neutral point of view - wikipedia, the free encyclopedia (2006) [On-line; accessed 19-August-2006].
33. Good, B.M., Tranfield, E., Tan, P., Shehata, M., Singhera, G., Gosselink, J., Okon, E., Wilkinson, M.: Fast, cheap and out of control: a zero curation model for ontology development. In: Proceedings of the PSB'06. (2006)