Dissolved organic matter concentration and quality influences upon structure and function of freshwater microbial communities

Microbial Ecology

Volumn 52, Issue 3, 2006, Pages 378-388

  Docherty, Kathryn M ^a   Young, Katherine C ^a   Maurice, Patricia A ^a   Bridgham, Scott D ^b  

^a UNIVERSITY OF NOTRE DAME   (United States)

^b UNIVERSITY OF OREGON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; FRESH WATER; ORGANIC COMPOUND;

BACTERIUM; COMMUNITY STRUCTURE; DISSOLVED ORGANIC MATTER; ELECTROKINESIS; FRESHWATER ECOSYSTEM; INOCULATION; MICROBIAL COMMUNITY; WATER CHEMISTRY;

AGAR GEL ELECTROPHORESIS; ARTICLE; BACTERIAL COUNT; BACTERIUM; BIODIVERSITY; BIOMASS; CHEMISTRY; CLASSIFICATION; ECOSYSTEM; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; MOLECULAR WEIGHT; SPECIES DIFFERENCE; TIME;

BACTERIA; BIODIVERSITY; BIOMASS; CARBON; COLONY COUNT, MICROBIAL; ECOSYSTEM; ELECTROPHORESIS, AGAR GEL; FRESH WATER; MOLECULAR WEIGHT; ORGANIC CHEMICALS; SPECIES SPECIFICITY; TIME FACTORS; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS);

EID: 33845405607     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-006-9089-x     Document Type: Article

References (38)

1. Allard, B, Borén, H, Pettersson, C, Zhang, G (1994) Degradation of humic substances by UV irradiation. Environ Int 20: 97-101
2. Anesio, AM, Hollas, C, Granéli, W, Laybourn-Parry, J (2004) Inf luence of humic substances on bacterial and viral dynamics in freshwaters. Appl Environ Microbiol 70(8): 4848-4854
3. APHA (1992) Standard Methods for the Examination of Water and Wastewater. American Public Health Association. Washington, DC
4. Burkert, U, Warnecke, F, Babenzien, D, Zwirnmann, E, Pernthaler, J (2003) Members of a readily enriched b-Proteobacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol 69(11): 6550-6559
5. Chin, Y-P, Aiken, G, O'Loughlin, E (1994) Molecular weight, polydispersity, and spectroscopic properties of aquatic humic substances. Environ Sci Technol 28: 1853-1858
6. Cottrell, MT, Kirchman, DL (2000) Natural assemblages of marine Proteobacteria and members of the Cytophaga-f lavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66(4): 1692-1697
7. Eiler, A, Langenheder, S, Bertilsson, S, Tranvik, LJ (2003) Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol 69(7): 3701-3709
8. Ellis, BD, Butterfield, P, Jones, WL, McFeters, GA, Camper, AK (2000) Effects of carbon source, carbon concentration, and chlorination on growth related parameters of heterotrophic biofilm bacteria. Microb Ecol 38: 330-347
9. Findlay, SEG, Sinsabaugh, RL, Sobczak, WV, Hoostal, M (2003) Metabolic and structural response of hyporheic microbial communities to variations in supply of dissolved organic matter. Limnol Oceanogr 48(4): 1608-1617
10. Fischer, H, Sachse, A, Steinberg, CEW, Pusch, M (2002) Differential retention and utilization of dissolved organic carbon by bacteria in river sediments. Limnol Oceanogr 47(6): 1702-1711
11. Fisher, MM, Klug, JL, Lauster, G, Newton, M, Triplett, EW (2000) Effects of resources and trophic interactions on freshwater bacterioplankton diversity. Microb Ecol 40: 125-138
12. Frost, PC, Maurice, PA, Fein, JB (2003) The effect of cadmium on fulvic acid adsorption to Bacillus subtilis. Chem Geol 200: 217-224
13. Gayte, X, Fontvieille, D, Wilkinson, KJ (1999) Bacterial stimulation in mixed cultures of bacteria and organic carbon from river and lake waters. Microb Ecol 38: 285-295
14. Hobbie, JE, Daley, J, Jasper, S (1977) Use of Nucleopore filters for counting bacteria by f luorescence microscopy. Appl Environ Microbiol 33: 1225-1228
15. Kirchman, DL (1993) Leucine incorporation as a measure of biomass production. In: Kemp, PF, Sherr, BF, Sherr, EB, Cole, JJ (Eds.) Handbook of Methods in Aquatic Microbial Ecology. Lewis Publishers, Boca Raton, fl, pp 509-512
16. Kisand, V, Wikner, J (2003) Combining culture-dependent and -independent methodologies for estimation of richness of estuarine bacterioplankton consuming riverine dissolved organic matter. Appl Environ Microbiol 69(6): 3607-3616
17. Kopáček, J, Hejzlar, J, Kaňa, J, Porcal, P, Klementová, S (2003) Photochemical, chemical, and biological transformations of dissolved organic carbon and its effect on alkalinity production in acidified lakes. Limnol Oceanogr 48(1): 106-117
18. 13C addition experiments. Limnol Oceanogr 49(2): 588-596
19. Mann, CJ, Wetzel, RG (1995) Dissolved organic carbon and its utilization in a riverine wetland ecosystem. Biogeochemistry 31: 99-120
20. Maurice, PA, Manecki, M, Fein, JB, Schaefer, J (2004) Fractionation of an aquatic fulvic acid upon adsorption to the bacterium, Bacillus subtilis. Geomicrobiol J 21: 1-10
21. Meyer, JL, Edwards, RT, Risley, R (1987) Bacterial growth on dissolved organic carbon from a blackwater river. Microb Ecol 13: 13-29
22. Moran, MA, Hodson, RE (1990) Bacterial production on humic and nonhumic components of dissolved organic carbon. Limnol Oceanogr 35(8): 1744-1756
23. Muyzer, G, de Waal, EC, Uitterlinden, AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700
24. Myers, RM, Fischer, SG, Lerman, LS, Maniatis, T (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Res 13: 3131-3145
25. Obernosterer, I, Benner, R (2004) Competition between biological and photochemical processes in the mineralization of dissolved organic carbon. Limnol Oceanogr 49(1): 117-124
26. Ogawa, H, Amagai, Y, Koike, I, Kaiser, K, Benner, R (2001) Production of refractory dissolved organic matter by bacteria. Science 292: 917-920
27. Olsen, LM, Reinertsen, H, Vadstein, O (2002) Can phosphorus limitation inhibit dissolved organic carbon consumption in aquatic microbial food webs? A study of three food web structures in mesocosms. Microb Ecol 43: 353-366
28. Smith, EM, Prairie, YT (2004) Bacterial metabolism and growth efficiency in lakes: the importance of phosphorus availability. Limnol Oceanogr 49(1): 137-147
29. Strauss, EA, Lamberti, GA (2002) Effect of dissolved organic carbon quality on microbial decomposition and nitrification rates in stream sediments. Freshw Biol 47: 65-74
30. Throbäck, IN, Enwall, K, Jarvis, A, Hallin, S (2004) Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol Ecol 49: 401-417
31. Traina, SJ, Novak, J, Smeck, NE (1990) An ultraviolet absorbance method of estimating the percent aromatic carbon content of humic acids. J Environ Qual 19: 151-153
32. Wehr, JD, Petersen, J, Findlay, S (1999) Inf luence of three contrasting detrital carbon sources on planktonic bacterial metabolism in a mesotrophic lake. Microb Ecol 37: 23-35
33. Wiegner, TN, Seitzinger, SP (2004) Season bioavailability of dissolved organic carbon and nitrogen from pristine and polluted freshwater wetlands. Limnol Oceanogr 49(5): 1703-1712
34. Yokokawa, T, Nagata, T, Cottrell, MT, Kirchman, DL (2004) Growth rate of the major phylogenetic bacterial groups in the Delaware estuary. Limnol Oceanogr 49(5): 1620-1629
35. Young, KC, Docherty, KM, Maurice, PA, Bridgham, SD (2005) Dissolved organic matter biodegradation in two streams and a dystrophic pond: inf luence of source and native microbial population. Hydrobiologia 539: 1-11
36. Young, KC, Maurice, PA, Docherty, KM, Bridgham, SD (2004) Bacterial degradation of dissolved organic matter from two northern Michigan streams. Geomicrobiol J 21: 521-528
37. Ziegler, SE, Fogel, ML (2003) Seasonal and diel relationships between the isotopic compositions of dissolved and particulate organic matter in freshwater ecosystems. Biogeochemistry 64: 25-52
38. Zou, L, Wang, X, Callahan, J, Culp, RA, Chen, RF, Altabet, MA, Sun, M (2004) Bacterial roles in the formation of high-molecular-weight dissolved organic matter in estuarine and coastal waters: evidence from lipids and the compound-specific isotopic ratios. Limnol Oceanogr 49(1): 297-302