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Fried, M. W.; Shiffman, M. L.; Reddy, K. R.; Smith, C.; Marinos, G.; Gonçales, F. L., Jr.; Häussinger, D.; Diago, M.; Carosi, G.; Dhumeaux, D.; Craxi, A.; Lin, A.; Hoffman, J.; Yu, J. Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection. N. Engl. J. Med. 2002, 347, 975-982.
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Non-nucleoside benzimidazole-based allosteric inhibitors of the hepatitis C virus NS5B polymerase: Inhibition of subgenomic hepatitis C virus RNA replicons in Huh-7 cells
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Beaulieu, P. L.; Bousquet, Y.; Gauthier, J.; Gillard, J.; Marquis, M.; McKercher, G.; Pellerin, C.; Valois, S.; Kukolj, G. Non-nucleoside benzimidazole-based allosteric inhibitors of the hepatitis C virus NS5B polymerase: Inhibition of subgenomic hepatitis C virus RNA replicons in Huh-7 cells. J. Med. Chem. 2004, 47, 6884-6892.
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22244435560
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Potent inhibitors of subgenomic hepatitis C virus RNA replication through optimization of indole-N-acetamide allosteric inhibitors of the viral NS5B polymerase
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Harper, S.; Avolio, S.; Pacini, B.; Di Filippo, M.; Altamura, S.; Tomei, L.; Paonessa, G.; Di Marco, S.; Carfi, A.; Giuliano, C.; Padron, J.; Bonelli, F.; Migliaccio, G.; De Francesco, R.; Laufer, R.; Rowley, M.; Narjes, F. Potent inhibitors of subgenomic hepatitis C virus RNA replication through optimization of indole-N-acetamide allosteric inhibitors of the viral NS5B polymerase. J. Med. Chem. 2005, 48, 4547-4557.
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Paonessa, G.7
Di Marco, S.8
Carfi, A.9
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De Francesco, R.14
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8
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32344448745
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3-(1,1-Dioxo-2H-(1,2,4)-benzothiadiazin-3-yl)-4-hydroxy-2(1H) -quinolinones, potent inhibitors of hepatitis C virus RNA-dependent RNA polymerase
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Tedesco, R.; Shaw, A. N.; Bambal, R.; Chai, D.; Concha, N. O.; Darcy, M. G.; Dhanak, D.; Fitch, D. M.; Gates, A.; Gerhardt, W. G.; Halegoua, D. L.; Han, C.; Hofmann, G. A.; Johnston, V. K.; Kaura, A. C.; Liu, N.; Keenan, R. M.; Lin-Goerke, J.; Sarisky, R. T.; Wiggall, K. J.; Zimmerman, M. N.; Duffy, K. J. 3-(1,1-Dioxo-2H-(1,2,4)-benzothiadiazin-3-yl)-4-hydroxy-2(1H)-quinolinones, potent inhibitors of hepatitis C virus RNA-dependent RNA polymerase. J. Med. Chem. 2006, 49, 971-983.
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Darcy, M.G.6
Dhanak, D.7
Fitch, D.M.8
Gates, A.9
Gerhardt, W.G.10
Halegoua, D.L.11
Han, C.12
Hofmann, G.A.13
Johnston, V.K.14
Kaura, A.C.15
Liu, N.16
Keenan, R.M.17
Lin-Goerke, J.18
Sarisky, R.T.19
Wiggall, K.J.20
Zimmerman, M.N.21
Duffy, K.J.22
more..
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9
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33746700189
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Benzimidazole derivatives bearing substituted biphenyls as hepatitis C virus NS5B RNA-dependent RNA polymerase inhibitors: Structure-activity relationship studies and identification of a potent and highly selective inhibitor JTK-109
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Hirashima, S.; Suzuki, T.; Ishida, T.; Noji, S.; Yata, S.; Ando, I.; Komatsu, M.; Ikeda, S.; Hashimoto, H. Benzimidazole derivatives bearing substituted biphenyls as hepatitis C virus NS5B RNA-dependent RNA polymerase inhibitors: Structure-activity relationship studies and identification of a potent and highly selective inhibitor JTK-109. J. Med. Chem. 2006, 49, 4721-4736.
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Komatsu, M.7
Ikeda, S.8
Hashimoto, H.9
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10
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33645420705
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Enhanced antiviral efficacy for Valopicitabine (NM283) plus Peg-interferon in hepatitis C patients with HCV genotype-1 infection: Results of a phase IIa multicenter trial
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Presented at the, Paris, France, April 13-17
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Afdhal, N.; Rodriguez-Torres, M.; Lawitz, E.; Godofsky, E.; Chao, G.; Fielman, B.; Knox, S.; Broen, N. Enhanced antiviral efficacy for Valopicitabine (NM283) plus Peg-interferon in hepatitis C patients with HCV genotype-1 infection: results of a phase IIa multicenter trial. Presented at the 40th EASL, Paris, France, April 13-17, 2005.
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40th EASL
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Afdhal, N.1
Rodriguez-Torres, M.2
Lawitz, E.3
Godofsky, E.4
Chao, G.5
Fielman, B.6
Knox, S.7
Broen, N.8
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11
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33845352784
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Interim results of a multiple ascending dose study of R1626, a novel nucleoside analog targeting HCV polymerase in chronic HCV patients
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Presented at the, Vienna, Austria; Abstract 731
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Roberts, S.; Cooksley, G.; Shaw, D.; Berns, H. K.; Brandl, M. T.; Fettner, S. H.; Hill, G.; Ipe, D.; Klumpp, K.; Mannino, M.; O'Mara, E.; Tu, Y.; Washington, C. B. Interim results of a multiple ascending dose study of R1626, a novel nucleoside analog targeting HCV polymerase in chronic HCV patients. Presented at the 41st EASL, Vienna, Austria; Abstract 731.
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41st EASL
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Roberts, S.1
Cooksley, G.2
Shaw, D.3
Berns, H.K.4
Brandl, M.T.5
Fettner, S.H.6
Hill, G.7
Ipe, D.8
Klumpp, K.9
Mannino, M.10
O'Mara, E.11
Tu, Y.12
Washington, C.B.13
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12
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64349105671
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Antiviral activity of the non-nucleoside polymerase inhibitor. HCV-796, in patients with chronic hepatitis C virus: Preliminary results from a randomized, double-blind, placebo-controlled, ascending multiple dose study
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Presented at, Los Angeles, CA, May 20-25
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Chandra, C.; Raible, D.; Harper, D.; Speth, J.; Villano, S.; Bichier, G. Antiviral activity of the non-nucleoside polymerase inhibitor. HCV-796, in patients with chronic hepatitis C virus: preliminary results from a randomized, double-blind, placebo-controlled, ascending multiple dose study. Presented at DDW 2006, Los Angeles, CA, May 20-25, 2006.
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DDW 2006
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Chandra, C.1
Raible, D.2
Harper, D.3
Speth, J.4
Villano, S.5
Bichier, G.6
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13
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33144486131
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Benzimidazole inhibitors of hepatitis C virus NS5B polymerase: Identification of 2-[(4-diaryl-methoxy)phenyl]-benzimidazole
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Ishida, T.; Suzuki, T.; Hirashima, S.; Mizutani, K.; Yoshida, A.; Ando, I.; Ikeda, S.; Adachi, T.; Hashimoto, H. Benzimidazole inhibitors of hepatitis C virus NS5B polymerase: Identification of 2-[(4-diaryl-methoxy)phenyl]- benzimidazole. Bioorg. Med. Chem. Lett. 2006, 16, 1859-1863.
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Ishida, T.1
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Ando, I.6
Ikeda, S.7
Adachi, T.8
Hashimoto, H.9
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14
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4544324634
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Drug design: Binding mode determination of benzimidazole inhibitors of the hepatitis C virus RNA polymerase by a structure and dynamics strategy
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The Boehringer Ingelheim group reported in their study of benzimidazole derivatives that the aromatic ring at the 2-position of the benzimidazole ring sterically influences the conformation of the cyclohexyl ring at the N1-position and that steric bulk at the ortho position reduces the biochemical potency: (a) Lapante, S; Jakalian, A.; Aubry, N.; Bousquet, Y.; Ferland, J.-M.; Gillard, J.; Lefebvre, S.; Poirier, M.; Tsantrizos, Y. S.; Kukolj, G.; Beaulieu, P. L. Drug design: Binding mode determination of benzimidazole inhibitors of the hepatitis C virus RNA polymerase by a structure and dynamics strategy. Angew. Chem., Int. Ed. 2004, 43, 4306-4311.
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Lapante, S.1
Jakalian, A.2
Aubry, N.3
Bousquet, Y.4
Ferland, J.-M.5
Gillard, J.6
Lefebvre, S.7
Poirier, M.8
Tsantrizos, Y.S.9
Kukolj, G.10
Beaulieu, P.L.11
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15
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0348143476
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Non-nucleoside inhibitors of the hepatitis C virus NS5B polymerase: Discovery and preliminary SAR of benzimidazole derivatives
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(b) Beaulieu, P. L.; Bös, M.; Bousquet, Y.; Fazal, G.; Gauthier, J.; Gillard, J.; Goulet, S.; LaPlante, S.; Poupart, M.-A.; Lefebvre, S.; McKercher, G.; Pellerin, C.; Austel, V.; Kukolj, G. Non-nucleoside inhibitors of the hepatitis C virus NS5B polymerase: Discovery and preliminary SAR of benzimidazole derivatives. Bioorg. Med. Chem. Lett. 2004, 14, 119-124.
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Bioorg. Med. Chem. Lett.
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Beaulieu, P.L.1
Bös, M.2
Bousquet, Y.3
Fazal, G.4
Gauthier, J.5
Gillard, J.6
Goulet, S.7
LaPlante, S.8
Poupart, M.-A.9
Lefebvre, S.10
McKercher, G.11
Pellerin, C.12
Austel, V.13
Kukolj, G.14
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16
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33845360110
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Fused heterotetracyclic compounds and use thereof as polymerase inhibitor
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Int. Patent Appl. WO2005/080399
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Oka, T.; Ikegashira, K.; Hirashima, S.; Yamanaka, H.; Noji, S.; Niwa, Y.; Matsumoto, Y.; Sato, T.; Ando, I.; Nomura, Y. Fused heterotetracyclic compounds and use thereof as polymerase inhibitor. Int. Patent Appl. WO2005/080399, 2005.
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(2005)
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Oka, T.1
Ikegashira, K.2
Hirashima, S.3
Yamanaka, H.4
Noji, S.5
Niwa, Y.6
Matsumoto, Y.7
Sato, T.8
Ando, I.9
Nomura, Y.10
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17
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33845365495
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Inhibitors of HCV replication
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U.S. Patent Appl. 2006/0166964
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Two other groups have recently discovered very similar tetracyclic inhibitors: (a) Hudyma, T. W.; Zheng, X.; He, F.; Ding, M.; Bergstrom, C. P.; Hewawasam, P.; Martin, S. W.; Gentles, R. G. Inhibitors of HCV replication. U.S. Patent Appl. 2006/0166964, 2006.
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(2006)
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Hudyma, T.W.1
Zheng, X.2
He, F.3
Ding, M.4
Bergstrom, C.P.5
Hewawasam, P.6
Martin, S.W.7
Gentles, R.G.8
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18
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49649110322
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Tetracyclic indole derivatives as antiviral agents
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Int. Patent Appl. WO 2006/046030
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(b) Conte, I.; Ercolani, C.; Narjes, F.; Pompei, M.; Rowley, M.; Stansfield, I. Tetracyclic indole derivatives as antiviral agents. Int. Patent Appl. WO 2006/046030, 2006.
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(2006)
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Conte, I.1
Ercolani, C.2
Narjes, F.3
Pompei, M.4
Rowley, M.5
Stansfield, I.6
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19
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33845350091
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Condensed ring compound and use thereof as HCV polymerase inhibitor
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Int. Patent Appl. WO 2005/014543
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Indole inhibitors have been recently reported by several groups. See rets 5 and 16. Compound 2 was prepared according to the following patent application: Oka, T.; Yata, S.; Ikegashira, K.; Noji, S.; Akaki, T.; Hirashima, S.; Niwa, Y.; Ando, I.; Sato, T. Condensed ring compound and use thereof as HCV polymerase inhibitor. Int. Patent Appl. WO 2005/014543, 2005.
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(2005)
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Oka, T.1
Yata, S.2
Ikegashira, K.3
Noji, S.4
Akaki, T.5
Hirashima, S.6
Niwa, Y.7
Ando, I.8
Sato, T.9
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20
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0010660819
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Viral polymerase inhibitors
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Int. Patent Appl. WO 03/010140
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Beaulieu, P. L.; Fazal, G.; Kukolj, G.; Jolicoeur, E.; Gillard, J.; Poupart, M.-A.; Rancourt, J. Viral polymerase inhibitors. Int. Patent Appl. WO 03/010140, 2003.
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(2003)
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Beaulieu, P.L.1
Fazal, G.2
Kukolj, G.3
Jolicoeur, E.4
Gillard, J.5
Poupart, M.-A.6
Rancourt, J.7
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21
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33845363107
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note
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The random conformational searches were performed with SYBYL 6.9.1 (Tripos Inc., 1669 S. Hanley Road, St. Louis, MO). Details were described in the supporting information.
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22
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0003845223
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DeLano Scientific: San Carlos, CA
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The cocrystal structure coordinate has been deposited in the Protein Data Bank (PDB code 2DXS). For details, see the Supporting Information. The molecular image was generated with PyMOL (PyMOL Molecular Graphics System; DeLano Scientific: San Carlos, CA).
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PyMOL Molecular Graphics System
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23
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33845366481
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Hepatitis C virus NS5B polymerase inhibitor binding pocket
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Int. Patent. Appl. WO 2004/099241
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(a) The Boehringer Ingelheim group disclosed an indole derivative's binding pocket: Coulombe, R.; Beaulieu, P. L.; Jolicoeur, E.; Kukolj, G.; Laplante, S.; Poupart, M.-R. Hepatitis C virus NS5B polymerase inhibitor binding pocket. Int. Patent. Appl. WO 2004/099241, 2004.
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(2004)
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Coulombe, R.1
Beaulieu, P.L.2
Jolicoeur, E.3
Kukolj, G.4
Laplante, S.5
Poupart, M.-R.6
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24
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33845357742
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note
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(b) The IRBM group reported in their study of enzyme-bound crystal structure of an indole derivative that the observed dihedral angle is 51°. See ref 5.
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25
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33845360527
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note
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A similar observation has been reported in the indole series. See ref 5.
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26
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2042507954
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Palladium-catalyzed cross-coupling reactions of organoboron compounds
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Miyaura, N.; Suzuki, A. Palladium-catalyzed cross-coupling reactions of organoboron compounds. Chem. Rev. 1995, 95, 2457-2483.
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Miyaura, N.1
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20444505551
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Inter- and intramolecular Mitsunobu reaction based approaches to 2-substituted chromans and chroman-4-ones
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Hodgetts, K. J. Inter- and intramolecular Mitsunobu reaction based approaches to 2-substituted chromans and chroman-4-ones. Tetrahedron 2005, 61, 6860-6870.
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Palladium catalyzed synthesis of annelated indoles
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Kozikowski, A. P.; Ma, D. Palladium catalyzed synthesis of annelated indoles. Tetrahedron Lett. 1991, 32, 3317-3320.
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Kozikowski, A.P.1
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