Exact hypothesis tests for log-linear models with exactLoglinTest

Journal of Statistical Software

Volumn 17, Issue 7, 2006, Pages 1-17

  Caffo, Brian ^a  

^a JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Exact testing; Fisher's exact test; Hypothesis testing; Poisson models

Indexed keywords

EID: 33845355651     PISSN: 15487660     EISSN: 15487660     Source Type: Journal    
DOI: 10.18637/jss.v017.i07     Document Type: Article

References (24)

1. Agresti A (1990). Categorical Data Analysis. Wiley, New York.
2. Booth J, Butler R (1999). "An Importance Sampling Algorithm for Exact Conditional Test in Log-Linear Models." Biometrika, 86, 321-332.
3. Booth JG, Capanu M, Heigenhauser L (2005). "Exact Conditional P Value Calculation for the Quasi-symmetry Model." Journal of Computational and Graphical Statistics, 14(3), 716-725.
4. Caffo BS, Booth JG (2001). "A Markov Chain Monte Carlo Algorithm for Approximating Exact Conditional Probabilities." Journal of Compuatational and Graphical Statistics, 10, 730-745.
5. Caffo BS, Booth JG (2003). "Monte Carlo Conditional Inference for a Log-linear and Logistic Models: A Survey of Current Methodology." Statistical Methods in Medical Research, 12(2), 109-123.
6. Chen Y, Diaconis P, Holmes SP, Liu JS (2005). "Sequential Monte Carlo Methods for Statistical Analysis of Tables." Journal of the American Statistical Association, 100(469), 109-120.
7. Chen Y, Dinwoodie IH, Sullivant S (2006). "Sequential Importance Sampling for Multiway Tables." The Annals of Statistics, 34(1), 523-545.
8. Diaconis P, Sturmfels B (1998). "Algebraic Algorithms for Sampling from Conditional Distributions." The Annals of Statistics, 26, 363-397.
9. Dobra A (2003). "Markov Bases for Decomposable Graphical Models." Bernoulli, 9(6), 1093-1108.
10. Dobra A, Tebaldi C, West M (2002). "Reconstruction of Contingency Tables with Missing Data." Technical report, Duke University.
11. Edwards DE, Havranek T (1985). "A Fast Procedure for Model Search in Multidimesional Contingency Tables." Biometrika, 72, 339-351.
12. Forster JJ, McDonald JW, Smith PWF (1996). "Monte Carlo Exact Conditional Tests for Log-linear and Logistic Models." Journal of the Royal Statistical Society B, 58, 445-453.
13. Hirji KF, Mehta CR, Patel NR (1987). "Computing Distributions for Exact Logistic Regression." Journal of the American Statistical Association, 82, 1110-1117.
14. Mac RJ, Dawson G (1995). "The 'Unusual Episode' Data Revisited." Journal of Statistics Education, 3(3), 6-6.
15. McDonald JW, Smith PWF, Forster JJ (1999). "Exact Tests of Goodness of Fit of Log-linear Models for Rates." Biometrics, 55, 620-624.
16. Mehta CR (1991). "StatXact: A Statistical Package for Exact Nonparametric Inference." The American Statistician, 45, 74-75.
17. Mehta CR, Patel NR (1980). "A Network Algorithm for the Exact Treatment of the 2 × K Contingency Table." Communications in Statistics: Simulation and Computation, 9, 649-664.
18. Mehta CR, Patel NR (1983). "A Network Algorithm for Performing Fisher's Exact Test in R × C Contingency Tables." Journal of the American Statistical Association, 78, 427-434.
19. Patefield WM (1981). "[Algorithm AS 159] An Efficient Method of Generating Random R×C Tables with Given Row and Column Totals." Applied Statistics, 30, 91-97.
20. R Development Core Team (2006a). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/.
21. R Development Core Team (2006b). R Installation and Administration. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-09-7, URL http://www.R-project.org/.
22. Smith PWF, Forster JJ, McDonald JW (1996). "Monte Carlo Exact Tests for Square Contingency Tables." Journal of the Royal Statistical Society A, 159, 309-321.
23. Strawderman RL, Wells MT (1998). "Approximately Exact Inference for the Common Odds Ratio in Several 2x2 Tables (C/R: P1307-1320)." Journal of the American Statistical Association, 93, 1294-1307.
24. Venables WN, Ripley BD (2002). Modern Applied Statistics with S. Springer-Verlag, New York, 4th edition.