Volume measures for linkage disequilibrium

BMC Genetics

Volumn 7, Issue , 2006, Pages

  Chen, Yuguo ^a   Lin, Chia Ho ^b   Sabatti, Chiara ^b,c  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 22; COMPUTER PROGRAM; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ALGORITHM; GENETIC MARKER; HAPLOTYPE; HOMOZYGOSITY; HUMAN; MICROSATELLITE MARKER; SAMPLE SIZE; SINGLE NUCLEOTIDE POLYMORPHISM;

ALGORITHMS; ALLELES; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 22; COMPUTER SIMULATION; GENETIC MARKERS; GENETICS, POPULATION; HUMANS; LINKAGE DISEQUILIBRIUM; SAMPLE SIZE;

EID: 33845337048     PISSN: 14712156     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-7-54     Document Type: Article

References (16)

1. Pritchard JK, Przeworski M: Linkage disequilibrium in humans: models and data. American Journal of Human Genetics 2001, 69:1-14.
2. Devlin B, Risch N: A Comparison of Linkage Disequilibrium Measures for Fine-Scale Mapping. Genomics 1995, 29:311-322.
3. Teare M, Dunning A, Durocher F, Rennart G, Easton DF: Sampling distribution of summary linkage disequilibrium measures. Annals of Human Genetics 2002, 66:223-233.
4. Tenesa A, et al.: Extent of linkage disequilbirum in a Sardinian sub-isolate: sampling and methodological considerations. Human Molecular Genetics 2004, 13:25-33.
5. Gabriel S, Schaffner S, Nguyen H, Moore J, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero S, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander E, Daly M, Altshuler D: The Structure of Haplotype Blocks in the Human Genome. Science 2002, 21:2225-2229.
6. Sabatti C: Measuring dependence with volume tests. The American Statistician 2002, 50:191-195.
7. Diaconis P, Efron B. Testing for Independence in a Two-Way Table: New Interpretations of the Chi-Square Statistics. The Annals of Statistics 1985, 13:845-874.
8. Hotelling H: Tubes and Spheres in n-paces, and a Class of Statistical Problems. American Journal of Mathematics 1939, 61:440-460.
9. Sabatti C, Risch N: Homozygosity and linkage disequilibrium. Genetics 2002, 160:1707-1719.
10. Wang H, Lin C, Service S, The international collaborative group on isolated populations, Chen Y, Freimer N, Sabatti C: Linkage disequilibrium and haplotype homozygosity in population samples genotyped at a high marker density. Hum Hered 2006, 62(4):175-89.
11. Diaconis P, Sturmfels B: Algebraic Algorithms for Sampling from Conditional Distributions. The Annals of Statistics 1997, 26:363-397.
12. Chen Y, Diaconis P, Holmes S, Liu J: Sequential Monte Carlo Methods for Statistical Analysis of Table. Journal of the American Statistical Association 2005, 100:109-120.
13. Service S, DeYoung J, Karayiorgou M, Louw Roos J, Pretorious H, Bedoya G, Ospina J, Ruiz-Linares A, Macedo A, Palha J, Heutink P, Aulchenko Y, Oostra B, van Duijn C, Jarvelin M, Varilo T, Peddle L, Rahman P, Piras G, Monne M, Murray S, Galver L, Peltonen L, Sabatti C, Collins A, Freimer N: Magnitude and distribution of linkage disequilibrium in population isolates and implications for genome-wide association studies. Nature Genetics 2006, 38:556-560.
14. Ophoff R, Escamilla M, Service S, Spesny M, Meshi D, Poon W, Molina J, Fournier E, Gallegos A, Mathews C, Neylan T, Batki S, Roche E, Ramirez M, Silva S, De Mille M, Dong P, Leon P, Reus V, Sandkuijl L, Freimer N: Genomewide linkage disequilibrium mapping of severe bipolar disorder in a population isolate. American Journal of Human Genetics 2002, 71:565-74.
15. Hinds D, Stuve L, Nilsen G, Halperin E, Eskin E, Ballinger D, Frazer K, Cox D: Whole-genome patterns of common DNA variation in three human populations. Science 2005, 307:1072-1079.
16. Excoffier L, Slatkin: Maximum likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 1995, 12(5):921-7.