Cyclops: New modular software suite for cryo-EM

Journal of Structural Biology

Volumn 157, Issue 1, 2007, Pages 19-27

  Plaisier, J R ^a   Jiang, L ^a   Abrahams, J P ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Electron microscopy; Image processing; Reconstruction; Software

Indexed keywords

ALGORITHM; ARCHITECTURE; ARTICLE; AUTOMATION; COMPUTER INTERFACE; COMPUTER PROGRAM; CRYOELECTRON MICROSCOPY; EQUIPMENT DESIGN; IMAGE PROCESSING; PRIORITY JOURNAL; PROCESS DESIGN; PRODUCTIVITY;

ALGORITHMS; CHAPERONINS; COMPUTATIONAL BIOLOGY; CRYOELECTRON MICROSCOPY; ESCHERICHIA COLI PROTEINS; HEAT-SHOCK PROTEINS; RIBOSOMAL PROTEINS; SOFTWARE; SOFTWARE DESIGN;

EID: 33845328074     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2006.07.002     Document Type: Article

References (13)

1. Collaborative Computational Project Number 4, 1994.The CCCP4 suite: programs for protein crystallography. Acta Cryst. D55, 760-763.
2. Chang, M., Kang, S., Rho, W., Kim, H., Kim, D., 1995. Improved binarization algorithm for document image by histogram and edge detection. Third International Conference on Document Analysis and Recognition (ICDAR'95), vol. 2, 636-643.
3. Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., and Leith A. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116 (1996) 190-199
4. Ludtke S.J., Baldwin P.R., and Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128 (1999) 82-97
5. Ness S.R., de Graaff R.A.G., Abrahams J.P., and Pannu N.S. New methods for automated macromolecular crystal structure solution. Structure 12 (2004) 1752-1761
6. Philippsen A., Schenk A.D., Stahlberg H., and Engel A. Iplt-image processing library and toolkit for the electron microscopy community. J. Struct. Biol. 144 (2003) 4-12
7. Plaisier J.R., Koning R.I., Koerten H.K., van Heel M., and Abrahams J.P. TYSON: robust searching, sorting and selecting of single particles in electron micrographs. J. Struct Biol. 145 (2004) 76-83
8. Prewitt J.M.S. Object enhancement and extraction. In: Lipkin B.S., and Rosenfield A. (Eds). In Picture Processing and Psychopictorics (1970), Academic Press, New York 5-149
9. Sorzano C.O.S., Marabini R., Velázquez-Muriel J., Bilbao-Castro J.R., Scheres S.H.W., Carazo J.M., and Pascual-Montano A. XMIPP: a new generation of an open-source image processing package for electron microscopy. J. Struct. Biol. 148 (2004) 194-204
10. Tagari M., Newman R., Chagoyen M., Carazo J.M., and Henrick K. New electron microscopy database and deposition system. Trends Biol. Sci. (2002) 589
11. van Heel M., Harauz G., Orlova E.V., Schmidt R., and Schatz M. A new generation image processing system. J. Struct. Biol. 116 (1996) 17-24
12. Yershova, A., LaValle, S.M., 2004. Deterministic sampling methods for spheres and SO(3). In Proceedings of the IEEE International Conference on Robotics and Automation (ICRA).
13. Zhu Y., Carragher B., and Potter C. Automated particle detection through efficient hough transforms. IEEE Transactions on Medical Imaging 22 (2003) 1053-1062