A new dynamical domain decomposition method for parallel molecular dynamics simulation

2005 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2005

Volumn 2, Issue , 2005, Pages 848-854

  Zhakhovskii, V ^a   Nishihara, K ^a   Fukuda, Y ^a   Shimojo, S ^a   Akiyama, T ^a   Miyanaga, S ^a   Sone, H ^b   Kobayashi, H ^b   Ito, E ^b   Seo, Y ^c   Tamura, M ^c   Ueshima, Y ^d  

^a OSAKA UNIVERSITY   (Japan)

^b TOHOKU UNIVERSITY   (Japan)

^c NEC CORPORATION   (Japan)

^d JAPAN ATOMIC ENERGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE ALGORITHMS; COMPUTER SIMULATION; DISTRIBUTED DATABASE SYSTEMS; MOLECULAR DYNAMICS; SUPERCOMPUTERS;

COMPUTING NET; DOMAIN DECOMPOSITION; GRID COMPUTING ENVIRONMENTS; SUPER COMPUTER CLUSTERS;

PARALLEL PROCESSING SYSTEMS;

EID: 33845307600     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGRID.2005.1558650     Document Type: Conference Paper

References (7)

1. S. Plimpton, "Fast Parallel Algorithms for Ahort-Range Molecular Dynamics", J. Comput. Phys., Academic Press, 1995, vol. 117, pp. 1-19.
2. L. Nyland et al, "Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques", J. Parallel and Distributed Computing, Academic Press, 1997, vol. 47, pp. 125-138.
3. Y. Deng, R. F. Peierls, and C. Rivera, "An Adaptive Load Balancing Method for Parallel Molecular Dynamics Simulations", J. Comput. Phys., Academic Press, 2000, vol. 161, pp. 250-263.
4. V. Zhakhovskii, K. Nishihara, and M. Abe, "Molecular Dynamics Simulation on Stability of Converging Shocks", Inertial Fusion Science and Applications, IFSA 2001, Elsevier, Paris, 2002, pp. 106-110.
5. V. Zhakhovskii, A New Time-Reversible Integrator for Molecular Dynamics Applications, ILE Annual Progress Report 2003,(Osaka Univ., 2004), pp.151-154 (see also arXiv:physics/0405124, 24 May 2004)
6. S. I. Anisimov, V. V. Zhakhovskii, N. A. Inogamov, K. Nishihara, A. M. Oparin, and Yu. V. Petrov, "Destruction of a Solid Film under the Action of Ultrashort Laser Pulse", JETP Lett., Nauka/Interperiodica, Moscow, 2003, vol. 77, pp. 606-610.
7. T. J. Chung, Computational Fluid Dynamics, Cambrige University Press, 2002, ch. 18