Viruses in aquatic ecosystems. A review;Importance des virus dans la structure et le fonctionnement des réseaux trophiques microbiens aquatiques

Annee Biologique

Volumn 36, Issue 3, 1997, Pages 182-210

  Sime Ngando, Par Télesphore ^a  

^a UNIVERSITÉ BLAISE PASCAL   (France)

Author keywords

[No Author keywords available]

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EID: 33845187205     PISSN: 00035017     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (85)

1. ACKERMANN (H.-W.), DUBOW (M. S.), 1987. -Viruses of procaryotes. In: General properties of bacteriophages. CRC Press Inc., éd., Boca Raton, vol. 1, 202 p.
2. AZAM (F.), FENCHEL (T.), FIELD (J. G.), GRAY (J. S.), MEYER-REIL (L. A.), THINGSTAD (F.), 1983. -The ecological role of water-column microbes in the sea. Mar. Ecol. Prog., Ser., 10, 257-263.
3. BENYAHYA (M.)F LAVERAN (H.), BOHATIER (J.), SENAUD (J.), ATTAYEBI (M.), 1997. - Interactions between the ciliate protozoan Tetrahymena pyriformis and the simian rotavirus SAH. Eup. J. Protistol., sous presse.
4. BLOCK (J. C.), 1983. -Viruses in environmental waters. In: Viral pollution of the environment. Berg (G.), ad., CRC Press, Boca Raton, 117-145.
5. B0RSHEIM (K. Y.), BRATBAK (G.), HELDAL (M.), 1990. -Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy. Appl. Environ. MicrobioL, 56, 352-356.
6. B0RSHEIM (K. Y.) 1993. -Native marine bacteriophages. FEMS MicrobioL Ecol., 10, 141-159.
7. BRADLEY (D. E.) 1967. -Ultrastructure of bacteriophages and bacteriocins. Bacterial. Rev., 31, 230-314.
8. BRATBAK (G.), HELDAL (M.), 1993. -Total count of viruses in aquatic environments. In: Handbook of methods in aquatic microbial ecology. Kemp (P. F.), Sherr (B. F.), Sherr (E. B.), Cole (J. J.), eds., Boca Raton, Lewis Publishers, 135-138.
9. BRATBAK (G.), HELDAL (M.), NORLAND (S.), THINGSTAD (T. F.), 1990. -Viruses as partners in spring bloom microbial trophodynamics. Appl. Environ. MicrobioL, 56, 14-1405.
10. BRATBAK (G.), HELDAL (M.), THINGSTAD (T. F.), RIEMANN (B.), HASLUND (O. H.), 1992. -Incorporation of viruses into the budget of microbial C-transfer. Mar. Ecol. Prog. Ser., 83, 273-280.
11. BRATBAK (G.), LEVASSEUR (M.), MICHAUD (S.), CANTIN (G.), FERNàNDEZ (E.), HEMDAL (B. R.), HELDAL (M.), 1995. -Viral activity in relation to Emiliana huxleyi blooms: a mechanism of DMSP release? Mar. Ecol. Prog. Ser., 12, 133-142.
12. BRUSSAARD (C. P. D.), KEMPERS (R. S.), KOP (A. J.), RIEGMAN (R.), HELDAL (M.), 1996. -Virus-like particles in a summer bloom of Emiliana huxleyi in the North Sea. Mar. Ecol. Prog. Ser., 10, 105-113.
13. CHEN (F.), SUTTLE (C. A.), 1995. -Amplification of DNA polymerase gene fragments from viruses infecting microalgae. Appl. Environ. MicrobioL, 61, 1274-1278.
14. COCHLAN (. P.), WlKNER (.), STEWARD (. F.), SMITH (. C.), AZAM (F.), 1993. - Spatial distribution of viruses, bacteria and chlorophyll a in neritic, oceanic and estuarine environments. Mar. Ecol. Prog. Ser., 92, 77-87.
15. COMPS (M.), MENU (B.), BREUTL (G.), BONAMI (J. R.), 1991. -Viral infection associated with rotifer mortalities in mass culture. Aquaculture, 93, 1-7.
16. COTTRELL (M. T.), SUTTLE (C. A.), 1995a. -Dynamics of a lytic virus infecting the photosynthetic marine picoflagellate Micromonas pusilla. Limnol. Oceanogr., 40, 730-739.
17. COTTRELL (M. T.), SUTTLE (C. A.), 19956. -Genetic diversity of algal viruses which lyse the photosynthetic picoflagellate Micromonas pusilla (Prasinophyseae). Appl. Environ. MicrobioL, 61, 3088-3091.
18. DOUGLAS (D. J.), NOVTTSKY (J. A.), FOURNTER (R. O.), 1987. -Microautoradiographybased enumeration of bacteria with estimates of thymidine-specific growth and production rates. Mar. Ecol. Prog. Ser., 36, 91-99.
19. ESPEJO (R. T.), CANELO (E. S.), 1968. -Properties of bacteriophage PM2: a lipid containing bacterial virus. Virology, 34, 738-747.
20. FRANCKI (R. I. B.), FAUQUET (C. M.), KNUDSON (D. L.), BROWN (F.), 1991. -Classification and nomenclature of viruses. Fifth report of the International Committee on Taxonomy of Viruses. Arch. Viral. Suppl., 2, 1-450.
21. FRANK (H.), MOEBUS (K.), 1987. -An electron microscopic study of bacteriophages from marines waters. Helgoländer Meeresunters, 41, 385-414.
22. FUHRMAN (J. A.), SUTTLE (C. A.), 1993. -Viruses in marine planktonic systems. Oceanography, 6, 51-63.
23. FUHRMAN (J. A.), 1992. -Bacterioplankton roles in cycling of organic matter: the microbial food web. In: Primary productivity and biogeochemical cycles in the sea. Falkowski (P. G.), Woodhead (A. D.), éds., Plenum Press, New York, 361-383.
24. Garza (D. R.), Suttle (C. A.), 1995. -Large double-stranded DNA viruses which cause the lysis of a marine heterotrophic nanoflagellates (sp.) occur in natural marine viral communities. Aquat. Microb. Ecol., 9, 203-210.
25. GONZALEZ (J. M.), SUTTLE (C. A.), 1993. -Grazing by marine nanoflagellates on viruses and virus-sized particles: ingestion and digestion. Mar. Ecol. Prog. Ser., 94, 1-10.
26. HELDAL (M.), BRATBAK (G.), 1991. -Production and decay of viruses in aquatic environments. Mar. Ecol. Prog. Ser., 72, 205-212.
27. HENNES (K. P.), SIMON (M.), 1995. -Significance of bacteriophages for controlling bacterioplankton growth in a mesotrophic lake. Appl. Environ. Microbiol., 61, 333-340.
28. HENNES (K. P.), SUTTLE (C. A.), 1995. -Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy. Limnol. Oceanogr., 40, 1050-1055.
29. HOLLIBAUGH (J. T.), 1988. -Limitations of the [3-H]thymidine method for estimating bacterial productivity due to thymidine metabolism. Mar. Ecol. Prog. Ser., 43, 19-30.
30. HUTCHINSON (G. E.), 1961. -The paradox of the plankton. Am. Nat., 45, 137-145.
31. JOFRE (J.), 1991. -Les bacteriophages dans les milieux hydriques. In: Virologie des milieux hydriques, Tec & Doc-Lavoissier, Paris, 253-276.
32. JUMARS (P. A.), PENRY (D. L.), BAROSS (J. A.), PERRY (M. J.), FROST (B. W.), 1989. - Closing the microbial loop: dissolved carbon pathway to heterotrophic bacteria from incomplete ingestion, digestion and absorption in animals. Deep-Sea Res., 36, 483-495.
33. KELLOGG (C. A.), ROSE (J. B.), JIANG (S. C.), THURMOND (J. M.), PAUL (J. H.), 1995. - Genetic diversity of related vibriophages isolated from marine environment around Florida and Hawaii, USA. Mar. Ecol. Prog. Ser., 12, 89-98.
34. KOKJOHN (T. A.), SAYLER (G. S.), MILLER (R. V.), 1991. -Attachment and replication of Pseudomonas aeruginosa bacteriophage under conditions simulating aquatic environments. J. Gen. Microbiol., 13, 661-666.
35. LARSSON (U.), HAGSTRöM (A.), 1982. -Fractionated phytoplankton primary production, exudate release and bacterial production in a Baltic eutrophication gradient. Mar. BioL, 67, 57-70.
36. LEGENDSE (L.), LE FèVRE (J.), 1995. -Microbial food webs and the export of biogenie carbon in oceans. Aquat. Microb. Ecol., 9, 69-77.
37. LENSKI (R. E.), 1988. -Dynamics of interactions between bacteria and virulent bacteriophage. Adv. Microb. Ecol., 10, 1-43.
38. LUCENA (F.), DmziA (M.), BIZIAGOS (E.), GRANGE (J.-M.), DELOINCE (R.), 1991. Extraction et concentration des virus des milieux hydriques. In: Virologie des milieux hydriques, Tec & Doc-Lavoissier, Paris, 71-106.
39. MARANGER (R.), BIRD (D. F.), 1995. -Viral abundance in aquatic systems: a comparison between marine and fresh waters. Mar. Ecol. Prog. Ser., 12, 217-226.
40. MARCHANT (H. J.), SCOTT (F. J.), 1993. -Uptake of sub-micrometer particles and dissolved organic material by Antarctic choanoflagellates. Mar. Ecol. Prog. Ser.; 92, 59-64.
41. MATHIAS (C. B.), KIRSCHNER (A. K. T.), VELIMIROV (B.), 1995. -Seasonal variations of virus abundance and viral control of the bacterial production in a backwater system of the Danube River. Appl. Environ. Microbiol., 61, 3734-3740.
42. MAUL (A.), 1991. -Échantillonnage et inference statistique. In: Virologie des milieux hydriques, Tec & Doc-Lavoissier, Paris, 35-69.
43. McMANUs (G. B.), FUHRMAN (J. A.), 1988. -Control of marine bacterioplankton populations: measurement and significance of grazing. Hydrobiologie, 15, 51-62.
44. MEYER (J. A.), TAYLOR (F. J. R.), 1979 . -A virus which lyses the marine nanoflagellate Micromonas pusilla. Nature, 28, 299-301.
45. MIDDELBOE (M.), J0RGENSEN (N. O. G.), KROER (N.), 1996. -Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton. Appl. Environ. Microbiol., 62, 1991-1997.
46. MURRAY (A. G.), ELDRIDGE (P. M.), 1994. -Marine viral ecology: incorporation of bacteriophages into the microbial planktonic food web paradigm. J. Plankton Res., 16, 627-641.
47. NAGASAKI (K.), ANDO (M.), IWAI (I.), ITAKURA (S.), ISHIDA (Y.), 1993. -Virus-like particles in an apochloric flagellate in Hiroshima Bay, Japan. Mar. Ecol. Prog. Ser., 96, 307-310.
48. OBERNOSTERER (I.), HERNDL (G. J.), 1995. -Phytoplankton extracellular release and bacterial growth: dependence on the inorganic N: P ratio. Mar. Ecol. Prog. Ser., 11, 247-257.
49. PACE (M. L.), 1988. -Bacterial mortality and the fate of bacterial production. Hydrobiologia, 15, 41-49.
50. PEDUZZI (P.), WEINBAUER (M. G.), 1993. -Effect of concentrating the virus-rich 2-200 nm size fraction of seawater on the formation of algal floes (marine snow). Limnol. Oceanogr., 38, 1562-1565.
51. POMEROY (L. R.), WIEBE (W. J.), 1988. -Energetics of microbial food web. Hydrobiologia, 15, 7-18.
52. PREISIG (H. R.), HIBBERD (D. J.), 1984. -Virus-like particles and endophytic bacteria in Paraphysomomas and Chromophysomonas (Cryptophyceae). Nord. J. Bot., 4, 279-285.
53. PROCTOR (L.), FUHRMAN (J. A.), 1991. -Roles of viral infection in organic particle flux. Mar. Ecol. Prog. Ser., 69, 133-142.
54. PROCTOR (L.), OKUBO (A.), FUHRMAN (J. A.), 1993. -Calibrating estimates of phageinduced mortality in marine bacteria: ultrastructural studies of marine bacteriophage development from one-step growth experiments. Microb. Ecol., 25, 16-182.
55. RASSOULZADEGAN (F.), 1993. -Protozoan patterns in the Azam-Ammerman's bacteriaphytoplankton mutualism. In: Trends in microbial ecology. Guerrero (R.), PedrosAlios (C.), eds, Spanish Society for Microbiology, Barcelone, 435-439.
56. SCHWARTZBROD (L.), 1991. -Virus et milieu hydrique. In: Virologie des milieux hydriques, Tec & Doc-Lavoissier, Paris, 1-33.
57. SERVAIS (P.), BILLEN (G.), VIVES-REGO (J.), 1985. -Rate of bacterial mortality in aquatic environments. Appl. Environ. Microbiol., 49, 14-1454.
58. SHERR (B. F.), SHERR (E. B.), 1984. -Role of heterotrophic protozoa in carbon and energy flow in aquatic ecosystems. In: Current perspectives in microbial ecology. Klug (M. J.), Reddy (C. A.), eds, Washington DC, American Society for Microbiology, 412-423.
59. SHERR (B. F.), SHERR (E. B.), PEDROS-ALIOS (C.), 1989. -Simultaneous measurements of bacterioplankton production and protozoan bacterivory in estuarine water. Mar. Ecol. Prog. Ser., 54, 20-219.
60. SHERR (E. B.), 1988. -Direct use of high molecular weight polysaccharide by heterotrophic flagellates. Nature, 33, 348-351.
61. SIEBURTH (J. M.), JOHNSON (P. W.), HARGRAVES (P. E.), 1988. -Ultrastructure and ecology of Aureococcue anophagefferens gen. et sp. nov. (Chrysophyseae): the dominant picoplankter during a bloom in Narragansett Bay, Rhode Island, summer 1985. J. Phycol., 24, 416-425.
62. SILBERT (J. A.), SAIDITT (M.), FRANKLIN (R. M,), 1969. -Structure and synthesis of a lipid-containing bacteriophage. Virology, 39, 666-681.
63. SIME-NGANDO (T.), YAGER (P.), 1994.' -Quantitative and functional importance of phagotrophic protozoa in the Northeast Water. Ber. z. Polarforsch., 14, 64-65.
64. SIME-NOANDO (T.), MlGNOT (.-P.)i AMBLARD (C.), BOURDeR (G.), DESVTLETTES (C.), QuiBLiER-LLOBERAS (C.), 1996. -Caractérisation des particules virales planctoniques dans un lac du Massif Central français : aspects méthodologiques et premiers résultats. Annls 'limnol., 32, 1-5.
65. SINDERMANN (C. J.), 1990. -Principles diseases of marine fish and shellfish. Academic, vol. 2, New York, 516 p.
66. SOMMARUOA (R.), KRöSSBACHER (M.), SALVENMOSER (W.), CATALAN (J.), PSENNER (R.), 1995. -Presence of large virus-like particles in a eutrophic reservoir. Aquat. Microb. Ecol., 9, 30-308.
67. STEELE (J. H.), 1974. -The structure of marine ecosystems. Blackwell Scientific Pubications, Oxford.
68. STEWARD (G. F.), SMITH (D. C.), AZAM (F.), 1996. -Abundance and production of bacteria and viruses in the Bering and Chukchi Seas. Mar. Ecol. Prog. Ser., 13, 287-300.
69. STEWARD (G. F.), WEKNER (J.), SMITH (D. C.), COCHLAN (W. P.), AZAM (F.), 1993a. - Estimation of virus production in the sea: I. Method development. Mar. Microb. Food Webs, 6, 57-78.
70. STEWARD (G. F.), WKNER (J.), COCHLAN (W. P.), SMITH (D. C.), AZAM (F.), 19936. - Estimation of virus production in the sea: II. Field results. Mar. Microb. Food Webs, 6, 79-90.
71. SUTTLE (C. A.), CHAN (A. M.), 1994. -Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp. Appl. Environ. Microbiol., 60, 3167-3174.
72. SUTTLE (C. A.), CHAN (A. M.), 1995. -Viruses infecting the marine Prymnesiophyte Chrysochromulina spp. : isolation, preliminary chracterization and natural abundance. Mar. Ecol. Prog. Ser., 11, 3721-3729.
73. SUTTLE (C. A.), CHEN (F.), 1992. -Mechanisms and rates of decay of marine viruses in seawater. Appl. Environ. Microbiol., 58, 3721-3729.
74. SUTTLE (C. A.), CHAN (A. M.), COTTRELL (M. T.), 1991. -Use of Ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton. Appl. Environ. Microbiol., 57, 721-726.
75. SUTTLE (C. A.), CHAN (A. M.), COTTRELL (M. T.), 1990. -Infection of phytoplankton by viruses and reduction of primary productivity. Nature, 34, 467-469.
76. SUTTLE (C. A.), CHAN (A. M.), CHEN (F.), GARZA (D. R.), 1993. -Cyanophages and sunlight: a paradox. In: Trends in microbial ecology. Guerrero (R.), PedrosAlios (C.), eds., Spanish Society for Microbiology, Barcelone, 303-307.
77. SUTTLE (C. A.), 1993. -Enumeration and isolation of viruses. In: Handbook of methods in aquatic microbial ecology. Kemp (P. F.), Sherr (B. F.), Sherr (E. B.), Cole (J. J.), eds., Lewis Publishers, Boca Raton, 121-134.
78. SUTTLE (C. A.), 1994. -The significance of viruses to mortality in aquatic microbial communities. Microb. Ecol., 28, 237-243.
79. TRANVIK (L. J.), SHERR (E. B.), SHERR (B. F.), 1993. -Uptake and utilization of colloidal DOM by heterotrophic flagellates in seawater. Mar. Ecol. Prog. Ser., 92, -309.
80. VAN ETTEN (J. L.), LANE (L. C.), MEINTS (R. H.), 1991. -Virus and virus-like particles of eukaryotic algae. Microbiol. Rev., 55, 58-620.
81. WEINBAUER (M. G.), PEDUZZI (P.), 1995. -Significance of viruses versus heterotrophic nanoflagellates for controlling bacterial abundance in the northern Adriatic Sea. J. Plankton Res., 17, 1851-1856.
82. WEINBAUER (M. G.), FUKS (D.), PUSKARIC (S.), PEDUZZI (P.), 1995. -Diel, seasonal, and depth-related variability of viruses and dissolved DNA in the Northern Adriatic Sea. Microb. Ecol., 30, 25-41.
83. WIKNER (J.), VALLINO (J. J.), STEWARD (G. F.), SMITH (D. C.), AZAM (F.), 1993. - Nucleic acids from the host bacterium as a major source of nucleotides for three marine bacteriophages. FEMS Microbiol. Ecol., 12, 23-248.
84. Wacox (R. M.)t FUHRMAN (J. A.), 1994. -Bacterial viruses in coastal seawater: lytic rather than lysogenic production. Mar. Ecol. Prog. Ser., 11, 35-45.
85. WILLIAMS (P. J. LE B.), 1981. -Incorporation of microheterotrophic processes into the classical paradigm of the planktonic food web. Kieler Meeresforsch. Sonderh., 5, 1-28.