-
2
-
-
84869068572
-
Compute intensive simulations for cellular models
-
A. Y. Zomaya, editor. Wiley
-
K. Burrage, P. Burrage, N. Hamilton, and T. Tian. Compute intensive simulations for cellular models. In A. Y. Zomaya, editor, Parallel Computation for Bioinformatics and Computational Biology. Wiley, 2005.
-
(2005)
Parallel Computation for Bioinformatics and Computational Biology
-
-
Burrage, K.1
Burrage, P.2
Hamilton, N.3
Tian, T.4
-
3
-
-
33751403046
-
-
Electronic Notes in Theoretcial Computer Science. Elsevier
-
L. Cardelli. Brane Calculi. In Proc. of BIO-CONCUR'03, Electronic Notes in Theoretcial Computer Science. Elsevier, 2003.
-
(2003)
Proc. of BIO-CONCUR'03
-
-
Cardelli, L.1
Calculi, B.2
-
4
-
-
26444548683
-
Projective brane calculus
-
Computational Methods in Systems Biology: International Conference CMSB 2004. Springer Verlag Heidelberg
-
V. Danos and S. Pradalier. Projective brane calculus. In Computational Methods in Systems Biology: International Conference CMSB 2004, volume 3082 of Lecture Notes in Computer Science, pages 134-148. Springer Verlag Heidelberg, 2004.
-
(2004)
Lecture Notes in Computer Science
, vol.3082
, pp. 134-148
-
-
Danos, V.1
Pradalier, S.2
-
5
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
H. de Jong. Modeling and Simulation of Genetic Regulatory Systems: A Literature Review. Journal of Computational Biology, 9(1):67-103, 2002.
-
(2002)
Journal of Computational Biology
, vol.9
, Issue.1
, pp. 67-103
-
-
De Jong, H.1
-
7
-
-
3142600919
-
Discrete event, multi-level simulation of metabolite channeling
-
D. Degenring, M. Röhl, and A. M. Uhrmacher. Discrete event, multi-level simulation of metabolite channeling. BioSystems, 75(1-3):29-41, 2004.
-
(2004)
BioSystems
, vol.75
, Issue.1-3
, pp. 29-41
-
-
Degenring, D.1
Röhl, M.2
Uhrmacher, A.M.3
-
8
-
-
0001144902
-
EfficientExact stochastic simulation of chemical systems with many species and many channels
-
M. A. Gibson and J. Brack. EfficientExact Stochastic Simulation of Chemical Systems with Many Species and Many Channels. Journal of Physical Chemistry A, 104(9): 1876-1889, 2000.
-
(2000)
Journal of Physical Chemistry A
, vol.104
, Issue.9
, pp. 1876-1889
-
-
Gibson, M.A.1
Brack, J.2
-
9
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
D. T. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions. The Journal of Physical Chemistry B, 81(25):2340-2361, 1977.
-
(1977)
The Journal of Physical Chemistry B
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
10
-
-
3543079925
-
A component-based simulation layer for JAMES
-
J. Himmelspach and A. M. Uhrmacher. A component-based simulation layer for JAMES. In Proc. of the 18th Workshop on Parallel and Distributed Simulation (PADS), May 16-19, 2004, Kufstein, Austria, pages 115-122, 2004.
-
(2004)
Proc. of the 18th Workshop on Parallel and Distributed Simulation (PADS), May 16-19, 2004, Kufstein, Austria
, pp. 115-122
-
-
Himmelspach, J.1
Uhrmacher, A.M.2
-
11
-
-
16244420734
-
Processing dynamic PDEVS models
-
D. DeGroot and P. Harrison, editors, Volendam, The Netherlands, October. IEEE Computer Society
-
J. Himmelspach and A. M. Uhrmacher. Processing dynamic PDEVS models. In D. DeGroot and P. Harrison, editors, Proceedings of the 12th IEEE International Symposium on MASCOTS, pages 329-336, Volendam, The Netherlands, October 2004. IEEE Computer Society.
-
(2004)
Proceedings of the 12th IEEE International Symposium on MASCOTS
, pp. 329-336
-
-
Himmelspach, J.1
Uhrmacher, A.M.2
-
12
-
-
0345602993
-
Petri nets and the simulation of metabolic networks
-
R. Hofestädt. Petri nets and the simulation of metabolic networks. In Silico Biology, 3, 2003.
-
(2003)
Silico Biology
, vol.3
-
-
Hofestädt, R.1
-
13
-
-
4043167812
-
Language modelling and simulation of autoreactive lymphocytes recruitment in inflamed brain vessels
-
P. Lecca, C. Priami, P. Quaglia, B. Rossi, C. Laudanna, and G. Constantin. Language Modelling and Simulation of Autoreactive Lymphocytes Recruitment in Inflamed Brain Vessels. SCS Simulation, 80:273-288, 2004.
-
(2004)
SCS Simulation
, vol.80
, pp. 273-288
-
-
Lecca, P.1
Priami, C.2
Quaglia, P.3
Rossi, B.4
Laudanna, C.5
Constantin, G.6
-
15
-
-
38049167675
-
A correct abstract machine for the stochastic pi-calculus
-
Electronic Notes in Theoretical Computer Science
-
A. Phillips and L. Cardelli. A correct abstract machine for the stochastic pi-calculus. In BioConcur 2004. Electronic Notes in Theoretical Computer Science, 2004.
-
(2004)
BioConcur 2004
-
-
Phillips, A.1
Cardelli, L.2
-
16
-
-
84974715948
-
Stochastic π-calculus
-
C. Priami. Stochastic π-calculus. The Computer Journal, 38(6):578-589, 1995.
-
(1995)
The Computer Journal
, vol.38
, Issue.6
, pp. 578-589
-
-
Priami, C.1
-
18
-
-
0035888407
-
Application of a stochastic name-passing calculus to representation and simulation of molecular processes
-
C. Priami, A. Regev, E. Shapiro, and W. Silvermann. Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Information Processing Letters, 80:25-31, 2001.
-
(2001)
Information Processing Letters
, vol.80
, pp. 25-31
-
-
Priami, C.1
Regev, A.2
Shapiro, E.3
Silvermann, W.4
-
20
-
-
4444383325
-
BioAmbients: An abstraction for biological compartments
-
A. Regev, E. Panina, W. Silverman, L. Cardelli, and E. Shapiro. BioAmbients: An Abstraction for Biological Compartments. Theoretical Computer Science, 2004.
-
(2004)
Theoretical Computer Science
-
-
Regev, A.1
Panina, E.2
Silverman, W.3
Cardelli, L.4
Shapiro, E.5
-
21
-
-
33751404303
-
Discrete event systems specification in systems biology - A discussion of stochastic PI calculus and DEVS
-
A. M. Uhrmacher and C. Priami. Discrete event systems specification in systems biology - a discussion of stochastic PI calculus and DEVS. In Proceedings of Winter Simulation Conference 2005, 2005.
-
(2005)
Proceedings of Winter Simulation Conference 2005
-
-
Uhrmacher, A.M.1
Priami, C.2
-
22
-
-
1542381217
-
STODE - Automatic stochastic simulation of systems described by [differential equations]
-
T.-M. Yi, M. Hucka, M. Morohasi, and H. Kitano, editors. Omnipress, Madison, USA
-
K. Van Gend and K. U. STODE - Automatic Stochastic Simulation of Systems Described by [differential equations. In T.-M. Yi, M. Hucka, M. Morohasi, and H. Kitano, editors, Proceedings of the 2nd International Conference on Systems Biology, pages 326-333. Omnipress, Madison, USA, 2001.
-
(2001)
Proceedings of the 2nd International Conference on Systems Biology
, pp. 326-333
-
-
Van Gend, K.1
U., K.2
|