NMPP: A user-customized NimbleGen microarray data processing pipeline

Bioinformatics

Volumn 22, Issue 23, 2006, Pages 2955-2957

  Wang, Xiangfeng ^a,b   He, Hang ^c   Li, Lei ^b   Chen, Runsheng ^c   Deng, Xing Wang ^a,b   Li, Songgang ^a  

^a PEKING UNIVERSITY   (China)

^b YALE UNIVERSITY   (United States)

^c INSTITUTE OF BIOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE EXPRESSION PROFILING; GENE PROBE; GENETIC ALGORITHM; IMAGE DISPLAY; INFORMATION PROCESSING; INFORMATION PROCESSING DEVICE; MICROARRAY ANALYSIS; PARSIMONY ANALYSIS; PRIORITY JOURNAL; PROCESS DESIGN;

EID: 33751356200     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl525     Document Type: Article

References (6)

1. Affymetrix (2002) Statistical Algorithms Description Document. Technical report, Affymetrix, Santa Clara, CA.
2. Bolstad,B. et al. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
3. Irizarry,R.A. et al. (2003a) Exploration, normalization and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
4. Irizarry,R.A. et al. (2003b) Summaries of affymetrix GeneChip probe level data. Nucleic Acids Res., 31, e15.
5. Li,L. et al. (2006) Genome-wide transcription analyses in rice using tiling microarrays. Nat. Genet., 38, 124-129.
6. Tukey,J. (1977) Exploratory Data Analysis. Addison-Wesley, Reading, MA.