-
1
-
-
0035875531
-
RecA-mediated strand exchange traverses substitutional heterologies more easily than deletions or insertions
-
Bucka,A. and Stasiak,A. (2001) RecA-mediated strand exchange traverses substitutional heterologies more easily than deletions or insertions. Nucleic Acids Res., 29, 2464-2470.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2464-2470
-
-
Bucka, A.1
Stasiak, A.2
-
2
-
-
0003562737
-
-
W.H. Freeman and Company, New York, USA
-
Griffiths,A.J.F., Miller,J.H., Suzuki,D.T., Lewontin,R.C. and Gelbart,W.M. (1996) An Introduction to Genetic Analysis. W.H. Freeman and Company, New York, USA.
-
(1996)
An Introduction to Genetic Analysis
-
-
Griffiths, A.J.F.1
Miller, J.H.2
Suzuki, D.T.3
Lewontin, R.C.4
Gelbart, W.M.5
-
3
-
-
0030924545
-
Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria
-
Vulic,M., Dionisio,F., Taddei,F. and Radman,M. (1997) Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria. Proc. Natl Acad. Sci. USA, 94, 9763-9767.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 9763-9767
-
-
Vulic, M.1
Dionisio, F.2
Taddei, F.3
Radman, M.4
-
4
-
-
0032605682
-
Recombinational DNA repair in bacteria and the RecA protein
-
Cox,M.M. (1999) Recombinational DNA repair in bacteria and the RecA protein. Prog. Nucleic Acid Res. Mol. Biol., 63, 311-366.
-
(1999)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.63
, pp. 311-366
-
-
Cox, M.M.1
-
5
-
-
0028102267
-
Biochemistry of homologous recombination in Escherichia coli
-
Kowalczykowski,S.C., Dixon,D.A., Eggleston,A.K., Lauder,S.D. and Rehrauer,W.M. (1994) Biochemistry of homologous recombination in Escherichia coli. Microbiol. Rev., 58, 401-465.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 401-465
-
-
Kowalczykowski, S.C.1
Dixon, D.A.2
Eggleston, A.K.3
Lauder, S.D.4
Rehrauer, W.M.5
-
6
-
-
0034176335
-
Initiation of genetic recombination and recombination-dependent replication
-
Kowalczykowski,S.C. (2000) Initiation of genetic recombination and recombination-dependent replication. Trends Biochem. Sci., 25, 156-165.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 156-165
-
-
Kowalczykowski, S.C.1
-
7
-
-
0026634975
-
Unwinding of heterologous DNA by Reca protein during the search for homologous sequences
-
Rould,E., Muniyappa,K. and Radding,C.M. (1992) Unwinding of heterologous DNA by Reca protein during the search for homologous sequences. J. Mol. Biol., 226, 127-139.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 127-139
-
-
Rould, E.1
Muniyappa, K.2
Radding, C.M.3
-
8
-
-
0032499794
-
Heteroduplex joint formation in Escherichia coli recombination is initiated by pairing of a 3′-ending strand
-
Friedman-Ohana,R. and Cohen,A. (1998) Heteroduplex joint formation in Escherichia coli recombination is initiated by pairing of a 3′-ending strand. Proc. Natl Acad. Sci. USA, 95, 6909-6914.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 6909-6914
-
-
Friedman-Ohana, R.1
Cohen, A.2
-
9
-
-
0030711614
-
RecA tests homology at both pairing and strand exchange
-
Bazemore,L.R., Folta-Stogniew,E., Takahashi,M. and Radding,C.M. (1997) RecA tests homology at both pairing and strand exchange. Proc. Natl Acad. Sci. USA, 94, 11863-11868.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 11863-11868
-
-
Bazemore, L.R.1
Folta-Stogniew, E.2
Takahashi, M.3
Radding, C.M.4
-
10
-
-
0028229920
-
Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments
-
Rao,B.J. and Radding,C.M. (1994) Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments. Proc. Natl Acad. Sci. USA, 91, 6161-6165.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 6161-6165
-
-
Rao, B.J.1
Radding, C.M.2
-
11
-
-
0024420672
-
Duplication mutation as an SOS response in Escherichia coli - Enhanced duplication formation by a constitutively activated RecA
-
Dimpfl,J. and Echols,H. (1989) Duplication mutation as an SOS response in Escherichia coli - enhanced duplication formation by a constitutively activated RecA. Genetics, 123, 255-260.
-
(1989)
Genetics
, vol.123
, pp. 255-260
-
-
Dimpfl, J.1
Echols, H.2
-
12
-
-
0024469392
-
The barrier to recombination between Escherichia coli and Salmonella typhimurium Is disrupted in mismatch-repair mutants
-
Rayssiguier,C., Thaler,D.S. and Radman,M. (1989) The barrier to recombination between Escherichia coli and Salmonella typhimurium Is disrupted in mismatch-repair mutants. Nature, 342, 396-401.
-
(1989)
Nature
, vol.342
, pp. 396-401
-
-
Rayssiguier, C.1
Thaler, D.S.2
Radman, M.3
-
13
-
-
4243248242
-
Inefficient mismatch repair: Genetic defects and down regulation
-
Bregeon,D., Matic,I., Radman,M. and Taddei,F. (1999) Inefficient mismatch repair: Genetic defects and down regulation. J. Genet., 78, 21-28.
-
(1999)
J. Genet.
, vol.78
, pp. 21-28
-
-
Bregeon, D.1
Matic, I.2
Radman, M.3
Taddei, F.4
-
14
-
-
0029992026
-
Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells
-
Feng,G., Tsui,H.C.T. and Winkler,M.E. (1996) Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells. J. Bacteriol., 178, 2388-2396.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2388-2396
-
-
Feng, G.1
Tsui, H.C.T.2
Winkler, M.E.3
-
15
-
-
0033959357
-
Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
-
Majewski,J., Zawadzki,P., Pickerill,P., Cohan,F.M. and Dowson,C.G. (2000) Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J. Bacteriol., 182, 1016-1023.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1016-1023
-
-
Majewski, J.1
Zawadzki, P.2
Pickerill, P.3
Cohan, F.M.4
Dowson, C.G.5
-
16
-
-
0032709783
-
DNA sequence similarity requirements for interspecific recombination in bacillus
-
Majewski,J. and Cohan,F.M. (1999) DNA sequence similarity requirements for interspecific recombination in bacillus. Genetics, 153, 1525-1533.
-
(1999)
Genetics
, vol.153
, pp. 1525-1533
-
-
Majewski, J.1
Cohan, F.M.2
-
17
-
-
10044274026
-
Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems
-
Delmas,S. and Matic,I. (2005) Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems. DNA Repair (Amst), 4, 221-229.
-
(2005)
DNA Repair (Amst)
, vol.4
, pp. 221-229
-
-
Delmas, S.1
Matic, I.2
-
18
-
-
0026636186
-
Calculation of sequence divergence from the thermal stability of DNA heteroduplexes
-
Springer,M.S., Davidson,E.H. and Britten,R.J. (1992) Calculation of sequence divergence from the thermal stability of DNA heteroduplexes. J. Mol. Evol., 34, 379-382.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 379-382
-
-
Springer, M.S.1
Davidson, E.H.2
Britten, R.J.3
-
19
-
-
0020050188
-
Polar branch migration promoted by recA protein: Effect of mismatched base pairs
-
DasGupta,C. and Radding,C.M. (1982) Polar branch migration promoted by recA protein: Effect of mismatched base pairs. Proc. Natl Acad. Sci. USA, 79, 762-766.
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 762-766
-
-
DasGupta, C.1
Radding, C.M.2
-
20
-
-
0019771908
-
Heteroduplex formation by RecA protein: Polarity of strand exchanges
-
West,S.C., Cassuto,E. and Howard-Flanders,P. (1981) Heteroduplex formation by RecA protein: Polarity of strand exchanges. Proc. Natl Acad. Sci. USA, 78, 6149-6153.
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, pp. 6149-6153
-
-
West, S.C.1
Cassuto, E.2
Howard-Flanders, P.3
-
21
-
-
0021080020
-
Insertions, deletions and mismatches in heteroduplex DNA made by recA protein
-
Bianchi,M.E. and Radding,C.M. (1983) Insertions, deletions and mismatches in heteroduplex DNA made by recA protein. Cell, 35, 511-520.
-
(1983)
Cell
, vol.35
, pp. 511-520
-
-
Bianchi, M.E.1
Radding, C.M.2
-
22
-
-
0027985084
-
Effect of length and location of heterologous sequences on RecA-mediated strand exchange
-
Morel,P., Stasiak,A., Ehrlich,S.D. and Cassuto,E. (1994) Effect of length and location of heterologous sequences on RecA-mediated strand exchange. J. Biol. Chem., 269, 19830-19835.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 19830-19835
-
-
Morel, P.1
Stasiak, A.2
Ehrlich, S.D.3
Cassuto, E.4
-
23
-
-
0031571585
-
RecA protein assisted selection reveals a low fidelity of recognition of homology in a duplex DNA by an oligonucleotide
-
Malkov,V.A., Sastry,L. and Camerini-Otero,R.D. (1997) RecA protein assisted selection reveals a low fidelity of recognition of homology in a duplex DNA by an oligonucleotide. J. Mol. Biol., 271, 168-177.
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 168-177
-
-
Malkov, V.A.1
Sastry, L.2
Camerini-Otero, R.D.3
-
24
-
-
0032544088
-
Polarity of DNA strand exchange promoted by recombination proteins of the RecA family
-
Gupta,R.C., Golub,E.I., Wold,M.S. and Radding,C.M. (1998) Polarity of DNA strand exchange promoted by recombination proteins of the RecA family. Proc. Natl Acad. Sci. USA, 95, 9843-9848.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 9843-9848
-
-
Gupta, R.C.1
Golub, E.I.2
Wold, M.S.3
Radding, C.M.4
-
25
-
-
0032544186
-
Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA
-
Gumbs,O.H. and Shaner,S.L. (1998) Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA. Biochemistry, 37, 11692-11706.
-
(1998)
Biochemistry
, vol.37
, pp. 11692-11706
-
-
Gumbs, O.H.1
Shaner, S.L.2
-
26
-
-
4644225318
-
Exchange of DNA base pairs that coincides with recognition of homology promoted by E. coli RecA protein
-
Folta-Stogniew,E., O'Malley,S., Gupta,R., Anderson,K.S. and Radding,C.M. (2004) Exchange of DNA base pairs that coincides with recognition of homology promoted by E. coli RecA protein. Mol. Cell, 15, 965-975.
-
(2004)
Mol. Cell
, vol.15
, pp. 965-975
-
-
Folta-Stogniew, E.1
O'Malley, S.2
Gupta, R.3
Anderson, K.S.4
Radding, C.M.5
-
27
-
-
14544283620
-
Polyproline and the 'spectroscopic ruler' revisited with single-molecule fluorescence
-
Schuler,B., Lipman,E.A., Steinbach,P.J., Kumke,M. and Eaton,W.A. (2005) Polyproline and the 'spectroscopic ruler' revisited with single-molecule fluorescence. Proc. Natl Acad. Sci. USA, 102, 2754-2759.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 2754-2759
-
-
Schuler, B.1
Lipman, E.A.2
Steinbach, P.J.3
Kumke, M.4
Eaton, W.A.5
-
28
-
-
0000359208
-
Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
-
Hopfield,J.J. (1974) Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA, 71, 4135-4139.
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 4135-4139
-
-
Hopfield, J.J.1
-
29
-
-
0016793283
-
Kinetic amplification of enzyme discrimination
-
Ninio,J. (1975) Kinetic amplification of enzyme discrimination. Biochimie, 57, 587-595.
-
(1975)
Biochimie
, vol.57
, pp. 587-595
-
-
Ninio, J.1
-
30
-
-
0037832291
-
Stretching DNA and RNA to probe their interactions with proteins
-
Allemand,J.F., Bensimon,D. and Croquette,V. (2003) Stretching DNA and RNA to probe their interactions with proteins. Curr. Opin. Struct. Biol., 13, 266-274.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 266-274
-
-
Allemand, J.F.1
Bensimon, D.2
Croquette, V.3
-
31
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
32
-
-
0035945241
-
Bypass of heterology during strand transfer by Saccharomyces cerevisiae Rad51 protein
-
Holmes,V.F., Benjamin,K.R., Crisona,N.J. and Cozzarelli,N.R. (2001) Bypass of heterology during strand transfer by Saccharomyces cerevisiae Rad51 protein. Nucleic Acids Res., 29, 5052-5057.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 5052-5057
-
-
Holmes, V.F.1
Benjamin, K.R.2
Crisona, N.J.3
Cozzarelli, N.R.4
-
33
-
-
0037439088
-
Hallmarks of homology recognition by RecA-like recombinases are exhibited by the unrelated Escherichia coli RecT protein
-
Noirot,P., Gupta,R.C., Radding,C.M. and Kolodner,R.D. (2003) Hallmarks of homology recognition by RecA-like recombinases are exhibited by the unrelated Escherichia coli RecT protein. EMBO J., 22, 324-334.
-
(2003)
EMBO J.
, vol.22
, pp. 324-334
-
-
Noirot, P.1
Gupta, R.C.2
Radding, C.M.3
Kolodner, R.D.4
-
34
-
-
0024999088
-
Inhibition of recA protein promoted ATP hydrolysis. 1. ATP gamma S and ADP are antagonistic inhibitors
-
Lee,J.W. and Cox,M.M. (1990) Inhibition of recA protein promoted ATP hydrolysis. 1. ATP gamma S and ADP are antagonistic inhibitors. Biochemistry, 29, 7666-7676.
-
(1990)
Biochemistry
, vol.29
, pp. 7666-7676
-
-
Lee, J.W.1
Cox, M.M.2
-
35
-
-
3342959174
-
Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes
-
Sagi,D., Friedman,N., Vorgias,C., Oppenheim,A.B. and Stavans,J. (2004) Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes. J. Mol. Biol., 341, 419-428.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 419-428
-
-
Sagi, D.1
Friedman, N.2
Vorgias, C.3
Oppenheim, A.B.4
Stavans, J.5
-
36
-
-
0028967415
-
DNA-strand exchange promoted by RecA protein in the absence of ATP - Implications for the mechanism of energy transduction in protein-promoted nucleic-acid transactions
-
Kowalczykowski,S.C. and Krupp,R.A. (1995) DNA-strand exchange promoted by RecA protein in the absence of ATP - implications for the mechanism of energy transduction in protein-promoted nucleic-acid transactions. Proc. Natl Acad. Sci. USA, 92, 3478-3482.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 3478-3482
-
-
Kowalczykowski, S.C.1
Krupp, R.A.2
-
37
-
-
0025634466
-
Energetics of RecA-mediated recombination reactions - Without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle
-
Rosselli,W. and Stasiak,A. (1990) Energetics of RecA-mediated recombination reactions - without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle. J. Mol. Biol., 216, 335-352.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 335-352
-
-
Rosselli, W.1
Stasiak, A.2
-
38
-
-
0025344113
-
Characterization of the DNA-binding activity of stable RecA-DNA complexes - Interaction between the 2 DNA-binding sites within RecA helical filaments
-
Muller,B., Koller,T. and Stasiak,A. (1990) Characterization of the DNA-binding activity of stable RecA-DNA complexes - interaction between the 2 DNA-binding sites within RecA helical filaments. J. Mol. Biol., 212, 97-112.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 97-112
-
-
Muller, B.1
Koller, T.2
Stasiak, A.3
-
39
-
-
0033582947
-
The simultaneous binding of two double-stranded DNA molecules by Escherichia coli RecA protein
-
Zaitsev,E.N. and Kowalczykowski,S.C. (1999) The simultaneous binding of two double-stranded DNA molecules by Escherichia coli RecA protein. J. Mol. Biol., 287, 21-31.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 21-31
-
-
Zaitsev, E.N.1
Kowalczykowski, S.C.2
-
40
-
-
13444298702
-
The search for homology: A paradigm for molecular interactions?
-
Dutreix,M., Fulconis,R. and Viovy,J.-L. (2003) The search for homology:a paradigm for molecular interactions? ComPlexUs, 1, 89-99.
-
(2003)
ComPlexUs
, vol.1
, pp. 89-99
-
-
Dutreix, M.1
Fulconis, R.2
Viovy, J.-L.3
-
41
-
-
0021813201
-
Networks of DNA and RecA protein are intermediates in homologous pairing
-
Tsang,S.S., Chow,S.A. and Radding,C.M. (1985) Networks of DNA and RecA protein are intermediates in homologous pairing. Biochemistry, 24, 3226-3232.
-
(1985)
Biochemistry
, vol.24
, pp. 3226-3232
-
-
Tsang, S.S.1
Chow, S.A.2
Radding, C.M.3
-
42
-
-
0022689021
-
Homologous recombination in Escherichia coli - Dependence on substrate length and homology
-
Shen,P. and Huang,H.V. (1986) Homologous recombination in Escherichia coli - dependence on substrate length and homology. Genetics, 112, 441-457.
-
(1986)
Genetics
, vol.112
, pp. 441-457
-
-
Shen, P.1
Huang, H.V.2
-
43
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
Halford,S.E. and Marko,J.F. (2004) How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res., 32, 3040-3052.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
44
-
-
0000328334
-
Ability of RecA protein to promote a search for rare sequences in duplex DNA
-
Honigberg,S.M., Rao,B.J. and Radding,C.M. (1986) Ability of RecA protein to promote a search for rare sequences in duplex DNA. Proc. Natl Acad. Sci. USA, 83, 9586-9590.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 9586-9590
-
-
Honigberg, S.M.1
Rao, B.J.2
Radding, C.M.3
-
45
-
-
0037015031
-
Protein-DNA computation by stochastic assembly cascade
-
Bar-Ziv,R., Tlusty,T. and Libchaber,A. (2002) Protein-DNA computation by stochastic assembly cascade. Proc. Natl Acad. Sci. USA, 99, 11589-11592.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 11589-11592
-
-
Bar-Ziv, R.1
Tlusty, T.2
Libchaber, A.3
-
46
-
-
0029063148
-
Kinetic proofreading in T-cell receptor signal-transduction
-
McKeithan,T.W. (1995) Kinetic proofreading in T-cell receptor signal-transduction. Proc. Natl Acad. Sci. USA, 92, 5042-5046.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 5042-5046
-
-
McKeithan, T.W.1
-
47
-
-
42749104723
-
High-fidelity DNA sensing by protein binding fluctuations
-
Tlusty,T., Bar-Ziv,R. and Libchaber,A. (2004) High-fidelity DNA sensing by protein binding fluctuations. Phys. Rev. Lett., 93, 258103.
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 258103
-
-
Tlusty, T.1
Bar-Ziv, R.2
Libchaber, A.3
-
48
-
-
0242692609
-
The bacterial RecA protein as a motor protein
-
Cox,M.M. (2003) The bacterial RecA protein as a motor protein. Annu. Rev. Microbiol., 57, 551-577.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 551-577
-
-
Cox, M.M.1
-
49
-
-
0032080009
-
Dissociation kinetics of RecA protein-three-stranded DNA complexes reveals a low fidelity of RecA-assisted recognition of homology
-
Malkov,V.A. and Camerini-Otero,R.D. (1998) Dissociation kinetics of RecA protein-three-stranded DNA complexes reveals a low fidelity of RecA-assisted recognition of homology. J. Mol. Biol., 278, 317-330.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 317-330
-
-
Malkov, V.A.1
Camerini-Otero, R.D.2
-
50
-
-
0029379540
-
The search for DNA homology does not limit stable homologous pairing promoted by RecA protein
-
Yancey-Wrona,J.E. and Camerini-Otero,R.D. (1995) The search for DNA homology does not limit stable homologous pairing promoted by RecA protein. Curr. Biol., 5, 1149-1158.
-
(1995)
Curr. Biol.
, vol.5
, pp. 1149-1158
-
-
Yancey-Wrona, J.E.1
Camerini-Otero, R.D.2
|