메뉴 건너뛰기




Volumn 34, Issue 18, 2006, Pages 5021-5031

High fidelity of RecA-catalyzed recombination: A watchdog of genetic diversity

Author keywords

[No Author keywords available]

Indexed keywords

OLIGOMER; RECA PROTEIN;

EID: 33751018876     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl586     Document Type: Article
Times cited : (51)

References (50)
  • 1
    • 0035875531 scopus 로고    scopus 로고
    • RecA-mediated strand exchange traverses substitutional heterologies more easily than deletions or insertions
    • Bucka,A. and Stasiak,A. (2001) RecA-mediated strand exchange traverses substitutional heterologies more easily than deletions or insertions. Nucleic Acids Res., 29, 2464-2470.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2464-2470
    • Bucka, A.1    Stasiak, A.2
  • 3
    • 0030924545 scopus 로고    scopus 로고
    • Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria
    • Vulic,M., Dionisio,F., Taddei,F. and Radman,M. (1997) Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria. Proc. Natl Acad. Sci. USA, 94, 9763-9767.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 9763-9767
    • Vulic, M.1    Dionisio, F.2    Taddei, F.3    Radman, M.4
  • 4
    • 0032605682 scopus 로고    scopus 로고
    • Recombinational DNA repair in bacteria and the RecA protein
    • Cox,M.M. (1999) Recombinational DNA repair in bacteria and the RecA protein. Prog. Nucleic Acid Res. Mol. Biol., 63, 311-366.
    • (1999) Prog. Nucleic Acid Res. Mol. Biol. , vol.63 , pp. 311-366
    • Cox, M.M.1
  • 6
    • 0034176335 scopus 로고    scopus 로고
    • Initiation of genetic recombination and recombination-dependent replication
    • Kowalczykowski,S.C. (2000) Initiation of genetic recombination and recombination-dependent replication. Trends Biochem. Sci., 25, 156-165.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 156-165
    • Kowalczykowski, S.C.1
  • 7
    • 0026634975 scopus 로고
    • Unwinding of heterologous DNA by Reca protein during the search for homologous sequences
    • Rould,E., Muniyappa,K. and Radding,C.M. (1992) Unwinding of heterologous DNA by Reca protein during the search for homologous sequences. J. Mol. Biol., 226, 127-139.
    • (1992) J. Mol. Biol. , vol.226 , pp. 127-139
    • Rould, E.1    Muniyappa, K.2    Radding, C.M.3
  • 8
    • 0032499794 scopus 로고    scopus 로고
    • Heteroduplex joint formation in Escherichia coli recombination is initiated by pairing of a 3′-ending strand
    • Friedman-Ohana,R. and Cohen,A. (1998) Heteroduplex joint formation in Escherichia coli recombination is initiated by pairing of a 3′-ending strand. Proc. Natl Acad. Sci. USA, 95, 6909-6914.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 6909-6914
    • Friedman-Ohana, R.1    Cohen, A.2
  • 10
    • 0028229920 scopus 로고
    • Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments
    • Rao,B.J. and Radding,C.M. (1994) Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments. Proc. Natl Acad. Sci. USA, 91, 6161-6165.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6161-6165
    • Rao, B.J.1    Radding, C.M.2
  • 11
    • 0024420672 scopus 로고
    • Duplication mutation as an SOS response in Escherichia coli - Enhanced duplication formation by a constitutively activated RecA
    • Dimpfl,J. and Echols,H. (1989) Duplication mutation as an SOS response in Escherichia coli - enhanced duplication formation by a constitutively activated RecA. Genetics, 123, 255-260.
    • (1989) Genetics , vol.123 , pp. 255-260
    • Dimpfl, J.1    Echols, H.2
  • 12
    • 0024469392 scopus 로고
    • The barrier to recombination between Escherichia coli and Salmonella typhimurium Is disrupted in mismatch-repair mutants
    • Rayssiguier,C., Thaler,D.S. and Radman,M. (1989) The barrier to recombination between Escherichia coli and Salmonella typhimurium Is disrupted in mismatch-repair mutants. Nature, 342, 396-401.
    • (1989) Nature , vol.342 , pp. 396-401
    • Rayssiguier, C.1    Thaler, D.S.2    Radman, M.3
  • 13
    • 4243248242 scopus 로고    scopus 로고
    • Inefficient mismatch repair: Genetic defects and down regulation
    • Bregeon,D., Matic,I., Radman,M. and Taddei,F. (1999) Inefficient mismatch repair: Genetic defects and down regulation. J. Genet., 78, 21-28.
    • (1999) J. Genet. , vol.78 , pp. 21-28
    • Bregeon, D.1    Matic, I.2    Radman, M.3    Taddei, F.4
  • 14
    • 0029992026 scopus 로고    scopus 로고
    • Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells
    • Feng,G., Tsui,H.C.T. and Winkler,M.E. (1996) Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells. J. Bacteriol., 178, 2388-2396.
    • (1996) J. Bacteriol. , vol.178 , pp. 2388-2396
    • Feng, G.1    Tsui, H.C.T.2    Winkler, M.E.3
  • 15
    • 0033959357 scopus 로고    scopus 로고
    • Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
    • Majewski,J., Zawadzki,P., Pickerill,P., Cohan,F.M. and Dowson,C.G. (2000) Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J. Bacteriol., 182, 1016-1023.
    • (2000) J. Bacteriol. , vol.182 , pp. 1016-1023
    • Majewski, J.1    Zawadzki, P.2    Pickerill, P.3    Cohan, F.M.4    Dowson, C.G.5
  • 16
    • 0032709783 scopus 로고    scopus 로고
    • DNA sequence similarity requirements for interspecific recombination in bacillus
    • Majewski,J. and Cohan,F.M. (1999) DNA sequence similarity requirements for interspecific recombination in bacillus. Genetics, 153, 1525-1533.
    • (1999) Genetics , vol.153 , pp. 1525-1533
    • Majewski, J.1    Cohan, F.M.2
  • 17
    • 10044274026 scopus 로고    scopus 로고
    • Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems
    • Delmas,S. and Matic,I. (2005) Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems. DNA Repair (Amst), 4, 221-229.
    • (2005) DNA Repair (Amst) , vol.4 , pp. 221-229
    • Delmas, S.1    Matic, I.2
  • 18
    • 0026636186 scopus 로고
    • Calculation of sequence divergence from the thermal stability of DNA heteroduplexes
    • Springer,M.S., Davidson,E.H. and Britten,R.J. (1992) Calculation of sequence divergence from the thermal stability of DNA heteroduplexes. J. Mol. Evol., 34, 379-382.
    • (1992) J. Mol. Evol. , vol.34 , pp. 379-382
    • Springer, M.S.1    Davidson, E.H.2    Britten, R.J.3
  • 19
    • 0020050188 scopus 로고
    • Polar branch migration promoted by recA protein: Effect of mismatched base pairs
    • DasGupta,C. and Radding,C.M. (1982) Polar branch migration promoted by recA protein: Effect of mismatched base pairs. Proc. Natl Acad. Sci. USA, 79, 762-766.
    • (1982) Proc. Natl Acad. Sci. USA , vol.79 , pp. 762-766
    • DasGupta, C.1    Radding, C.M.2
  • 20
    • 0019771908 scopus 로고
    • Heteroduplex formation by RecA protein: Polarity of strand exchanges
    • West,S.C., Cassuto,E. and Howard-Flanders,P. (1981) Heteroduplex formation by RecA protein: Polarity of strand exchanges. Proc. Natl Acad. Sci. USA, 78, 6149-6153.
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 6149-6153
    • West, S.C.1    Cassuto, E.2    Howard-Flanders, P.3
  • 21
    • 0021080020 scopus 로고
    • Insertions, deletions and mismatches in heteroduplex DNA made by recA protein
    • Bianchi,M.E. and Radding,C.M. (1983) Insertions, deletions and mismatches in heteroduplex DNA made by recA protein. Cell, 35, 511-520.
    • (1983) Cell , vol.35 , pp. 511-520
    • Bianchi, M.E.1    Radding, C.M.2
  • 22
    • 0027985084 scopus 로고
    • Effect of length and location of heterologous sequences on RecA-mediated strand exchange
    • Morel,P., Stasiak,A., Ehrlich,S.D. and Cassuto,E. (1994) Effect of length and location of heterologous sequences on RecA-mediated strand exchange. J. Biol. Chem., 269, 19830-19835.
    • (1994) J. Biol. Chem. , vol.269 , pp. 19830-19835
    • Morel, P.1    Stasiak, A.2    Ehrlich, S.D.3    Cassuto, E.4
  • 23
    • 0031571585 scopus 로고    scopus 로고
    • RecA protein assisted selection reveals a low fidelity of recognition of homology in a duplex DNA by an oligonucleotide
    • Malkov,V.A., Sastry,L. and Camerini-Otero,R.D. (1997) RecA protein assisted selection reveals a low fidelity of recognition of homology in a duplex DNA by an oligonucleotide. J. Mol. Biol., 271, 168-177.
    • (1997) J. Mol. Biol. , vol.271 , pp. 168-177
    • Malkov, V.A.1    Sastry, L.2    Camerini-Otero, R.D.3
  • 24
    • 0032544088 scopus 로고    scopus 로고
    • Polarity of DNA strand exchange promoted by recombination proteins of the RecA family
    • Gupta,R.C., Golub,E.I., Wold,M.S. and Radding,C.M. (1998) Polarity of DNA strand exchange promoted by recombination proteins of the RecA family. Proc. Natl Acad. Sci. USA, 95, 9843-9848.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 9843-9848
    • Gupta, R.C.1    Golub, E.I.2    Wold, M.S.3    Radding, C.M.4
  • 25
    • 0032544186 scopus 로고    scopus 로고
    • Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA
    • Gumbs,O.H. and Shaner,S.L. (1998) Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA. Biochemistry, 37, 11692-11706.
    • (1998) Biochemistry , vol.37 , pp. 11692-11706
    • Gumbs, O.H.1    Shaner, S.L.2
  • 26
    • 4644225318 scopus 로고    scopus 로고
    • Exchange of DNA base pairs that coincides with recognition of homology promoted by E. coli RecA protein
    • Folta-Stogniew,E., O'Malley,S., Gupta,R., Anderson,K.S. and Radding,C.M. (2004) Exchange of DNA base pairs that coincides with recognition of homology promoted by E. coli RecA protein. Mol. Cell, 15, 965-975.
    • (2004) Mol. Cell , vol.15 , pp. 965-975
    • Folta-Stogniew, E.1    O'Malley, S.2    Gupta, R.3    Anderson, K.S.4    Radding, C.M.5
  • 27
    • 14544283620 scopus 로고    scopus 로고
    • Polyproline and the 'spectroscopic ruler' revisited with single-molecule fluorescence
    • Schuler,B., Lipman,E.A., Steinbach,P.J., Kumke,M. and Eaton,W.A. (2005) Polyproline and the 'spectroscopic ruler' revisited with single-molecule fluorescence. Proc. Natl Acad. Sci. USA, 102, 2754-2759.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 2754-2759
    • Schuler, B.1    Lipman, E.A.2    Steinbach, P.J.3    Kumke, M.4    Eaton, W.A.5
  • 28
    • 0000359208 scopus 로고
    • Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
    • Hopfield,J.J. (1974) Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA, 71, 4135-4139.
    • (1974) Proc. Natl Acad. Sci. USA , vol.71 , pp. 4135-4139
    • Hopfield, J.J.1
  • 29
    • 0016793283 scopus 로고
    • Kinetic amplification of enzyme discrimination
    • Ninio,J. (1975) Kinetic amplification of enzyme discrimination. Biochimie, 57, 587-595.
    • (1975) Biochimie , vol.57 , pp. 587-595
    • Ninio, J.1
  • 30
    • 0037832291 scopus 로고    scopus 로고
    • Stretching DNA and RNA to probe their interactions with proteins
    • Allemand,J.F., Bensimon,D. and Croquette,V. (2003) Stretching DNA and RNA to probe their interactions with proteins. Curr. Opin. Struct. Biol., 13, 266-274.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 266-274
    • Allemand, J.F.1    Bensimon, D.2    Croquette, V.3
  • 31
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 32
    • 0035945241 scopus 로고    scopus 로고
    • Bypass of heterology during strand transfer by Saccharomyces cerevisiae Rad51 protein
    • Holmes,V.F., Benjamin,K.R., Crisona,N.J. and Cozzarelli,N.R. (2001) Bypass of heterology during strand transfer by Saccharomyces cerevisiae Rad51 protein. Nucleic Acids Res., 29, 5052-5057.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5052-5057
    • Holmes, V.F.1    Benjamin, K.R.2    Crisona, N.J.3    Cozzarelli, N.R.4
  • 33
    • 0037439088 scopus 로고    scopus 로고
    • Hallmarks of homology recognition by RecA-like recombinases are exhibited by the unrelated Escherichia coli RecT protein
    • Noirot,P., Gupta,R.C., Radding,C.M. and Kolodner,R.D. (2003) Hallmarks of homology recognition by RecA-like recombinases are exhibited by the unrelated Escherichia coli RecT protein. EMBO J., 22, 324-334.
    • (2003) EMBO J. , vol.22 , pp. 324-334
    • Noirot, P.1    Gupta, R.C.2    Radding, C.M.3    Kolodner, R.D.4
  • 34
    • 0024999088 scopus 로고
    • Inhibition of recA protein promoted ATP hydrolysis. 1. ATP gamma S and ADP are antagonistic inhibitors
    • Lee,J.W. and Cox,M.M. (1990) Inhibition of recA protein promoted ATP hydrolysis. 1. ATP gamma S and ADP are antagonistic inhibitors. Biochemistry, 29, 7666-7676.
    • (1990) Biochemistry , vol.29 , pp. 7666-7676
    • Lee, J.W.1    Cox, M.M.2
  • 35
    • 3342959174 scopus 로고    scopus 로고
    • Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes
    • Sagi,D., Friedman,N., Vorgias,C., Oppenheim,A.B. and Stavans,J. (2004) Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes. J. Mol. Biol., 341, 419-428.
    • (2004) J. Mol. Biol. , vol.341 , pp. 419-428
    • Sagi, D.1    Friedman, N.2    Vorgias, C.3    Oppenheim, A.B.4    Stavans, J.5
  • 36
    • 0028967415 scopus 로고
    • DNA-strand exchange promoted by RecA protein in the absence of ATP - Implications for the mechanism of energy transduction in protein-promoted nucleic-acid transactions
    • Kowalczykowski,S.C. and Krupp,R.A. (1995) DNA-strand exchange promoted by RecA protein in the absence of ATP - implications for the mechanism of energy transduction in protein-promoted nucleic-acid transactions. Proc. Natl Acad. Sci. USA, 92, 3478-3482.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 3478-3482
    • Kowalczykowski, S.C.1    Krupp, R.A.2
  • 37
    • 0025634466 scopus 로고
    • Energetics of RecA-mediated recombination reactions - Without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle
    • Rosselli,W. and Stasiak,A. (1990) Energetics of RecA-mediated recombination reactions - without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle. J. Mol. Biol., 216, 335-352.
    • (1990) J. Mol. Biol. , vol.216 , pp. 335-352
    • Rosselli, W.1    Stasiak, A.2
  • 38
    • 0025344113 scopus 로고
    • Characterization of the DNA-binding activity of stable RecA-DNA complexes - Interaction between the 2 DNA-binding sites within RecA helical filaments
    • Muller,B., Koller,T. and Stasiak,A. (1990) Characterization of the DNA-binding activity of stable RecA-DNA complexes - interaction between the 2 DNA-binding sites within RecA helical filaments. J. Mol. Biol., 212, 97-112.
    • (1990) J. Mol. Biol. , vol.212 , pp. 97-112
    • Muller, B.1    Koller, T.2    Stasiak, A.3
  • 39
    • 0033582947 scopus 로고    scopus 로고
    • The simultaneous binding of two double-stranded DNA molecules by Escherichia coli RecA protein
    • Zaitsev,E.N. and Kowalczykowski,S.C. (1999) The simultaneous binding of two double-stranded DNA molecules by Escherichia coli RecA protein. J. Mol. Biol., 287, 21-31.
    • (1999) J. Mol. Biol. , vol.287 , pp. 21-31
    • Zaitsev, E.N.1    Kowalczykowski, S.C.2
  • 40
    • 13444298702 scopus 로고    scopus 로고
    • The search for homology: A paradigm for molecular interactions?
    • Dutreix,M., Fulconis,R. and Viovy,J.-L. (2003) The search for homology:a paradigm for molecular interactions? ComPlexUs, 1, 89-99.
    • (2003) ComPlexUs , vol.1 , pp. 89-99
    • Dutreix, M.1    Fulconis, R.2    Viovy, J.-L.3
  • 41
    • 0021813201 scopus 로고
    • Networks of DNA and RecA protein are intermediates in homologous pairing
    • Tsang,S.S., Chow,S.A. and Radding,C.M. (1985) Networks of DNA and RecA protein are intermediates in homologous pairing. Biochemistry, 24, 3226-3232.
    • (1985) Biochemistry , vol.24 , pp. 3226-3232
    • Tsang, S.S.1    Chow, S.A.2    Radding, C.M.3
  • 42
    • 0022689021 scopus 로고
    • Homologous recombination in Escherichia coli - Dependence on substrate length and homology
    • Shen,P. and Huang,H.V. (1986) Homologous recombination in Escherichia coli - dependence on substrate length and homology. Genetics, 112, 441-457.
    • (1986) Genetics , vol.112 , pp. 441-457
    • Shen, P.1    Huang, H.V.2
  • 43
    • 3042579602 scopus 로고    scopus 로고
    • How do site-specific DNA-binding proteins find their targets?
    • Halford,S.E. and Marko,J.F. (2004) How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res., 32, 3040-3052.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 3040-3052
    • Halford, S.E.1    Marko, J.F.2
  • 44
    • 0000328334 scopus 로고
    • Ability of RecA protein to promote a search for rare sequences in duplex DNA
    • Honigberg,S.M., Rao,B.J. and Radding,C.M. (1986) Ability of RecA protein to promote a search for rare sequences in duplex DNA. Proc. Natl Acad. Sci. USA, 83, 9586-9590.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 9586-9590
    • Honigberg, S.M.1    Rao, B.J.2    Radding, C.M.3
  • 45
    • 0037015031 scopus 로고    scopus 로고
    • Protein-DNA computation by stochastic assembly cascade
    • Bar-Ziv,R., Tlusty,T. and Libchaber,A. (2002) Protein-DNA computation by stochastic assembly cascade. Proc. Natl Acad. Sci. USA, 99, 11589-11592.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11589-11592
    • Bar-Ziv, R.1    Tlusty, T.2    Libchaber, A.3
  • 46
    • 0029063148 scopus 로고
    • Kinetic proofreading in T-cell receptor signal-transduction
    • McKeithan,T.W. (1995) Kinetic proofreading in T-cell receptor signal-transduction. Proc. Natl Acad. Sci. USA, 92, 5042-5046.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 5042-5046
    • McKeithan, T.W.1
  • 47
    • 42749104723 scopus 로고    scopus 로고
    • High-fidelity DNA sensing by protein binding fluctuations
    • Tlusty,T., Bar-Ziv,R. and Libchaber,A. (2004) High-fidelity DNA sensing by protein binding fluctuations. Phys. Rev. Lett., 93, 258103.
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 258103
    • Tlusty, T.1    Bar-Ziv, R.2    Libchaber, A.3
  • 48
    • 0242692609 scopus 로고    scopus 로고
    • The bacterial RecA protein as a motor protein
    • Cox,M.M. (2003) The bacterial RecA protein as a motor protein. Annu. Rev. Microbiol., 57, 551-577.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 551-577
    • Cox, M.M.1
  • 49
    • 0032080009 scopus 로고    scopus 로고
    • Dissociation kinetics of RecA protein-three-stranded DNA complexes reveals a low fidelity of RecA-assisted recognition of homology
    • Malkov,V.A. and Camerini-Otero,R.D. (1998) Dissociation kinetics of RecA protein-three-stranded DNA complexes reveals a low fidelity of RecA-assisted recognition of homology. J. Mol. Biol., 278, 317-330.
    • (1998) J. Mol. Biol. , vol.278 , pp. 317-330
    • Malkov, V.A.1    Camerini-Otero, R.D.2
  • 50
    • 0029379540 scopus 로고
    • The search for DNA homology does not limit stable homologous pairing promoted by RecA protein
    • Yancey-Wrona,J.E. and Camerini-Otero,R.D. (1995) The search for DNA homology does not limit stable homologous pairing promoted by RecA protein. Curr. Biol., 5, 1149-1158.
    • (1995) Curr. Biol. , vol.5 , pp. 1149-1158
    • Yancey-Wrona, J.E.1    Camerini-Otero, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.