Population genetic structuring of the king weakfish, Macrodon ancylodon (Sciaenidae), in Atlantic coastal waters of South America: Deep genetic divergence without morphological change

Molecular Ecology

Volumn 15, Issue 14, 2006, Pages 4361-4373

  Santos, Simôni ^a   Hrbek, Tomas ^b   Farias, Izeni P ^c   Schneider, Horacio ^a   Sampaio, Iracilda ^a  

^a FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^b UNIVERSITY OF PUERTO RICO RIO PIEDRAS   (Puerto Rico)

^c FEDERAL UNIVERSITY OF AMAZONAS   (Brazil)

Author keywords

Atlantic coast; Cytochrome b; Macrodon ancylodon; Morphometric analysis; Population structure; Sciaenidae

Indexed keywords

ANIMAL; ARTICLE; ATLANTIC OCEAN; DEMOGRAPHY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HISTOLOGY; NUCLEOTIDE SEQUENCE; PERCIFORMES; PHYLOGENY; POPULATION GENETICS; SOUTH AMERICA; STATISTICAL MODEL;

ANIMALS; ATLANTIC OCEAN; BASE SEQUENCE; DEMOGRAPHY; GENETICS, POPULATION; GEOGRAPHY; LIKELIHOOD FUNCTIONS; PERCIFORMES; PHYLOGENY; SOUTH AMERICA; VARIATION (GENETICS);

MACRODON ANCYLODON; PISCES; SCIAENIDAE;

EID: 33751006466     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.03108.x     Document Type: Article

References (75)

1. Atchley WR, Gaskins CT, Anderson D (1976) Statistical properties of ratios. I. Empirical results. Systematic Zoology, 25, 137-148.
2. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, MA.
3. Bagley MJ, Lindquist DG, Geller JB (1999) Microsatellite variation, effective population size, and population genetic structure of vermilion snapper, Rhomboplites aurorubens, off the southeastern USA. Marine Biology, 134, 609-620.
4. Barel CDN, Van Oijen MJP, Witte F, Witte-Maas LM (1977) An introduction to the taxonomy and morphology of the haplochromine Cichlidae from Lake Victoria. Netherlands Journal of Zoology, 27, 333-389.
5. Beheregaray LB, Sunnucks P, Briscoe DA (2002) A rapid fish radiation associated with the last sealevel changes in southern Brazil: the silverside Odontesthes perugiae complex. Proceedings of the Royal Society of London. Series B, Biological Sciences, 269, 65-73.
6. Bowen BW, Bass AL, Rocha LA, Grant WS, Robertson DR (2001) Phylogeography of the trumpetfishes (Aulostomus): ring species complex on a global scale. Evolution, 55, 1029-1039.
7. Brunner PC, Douglas MR, Osinov A, Wilson CC, Bernatchez L (2001) Holartic phylogeography of Arctic charr (Salvelinus alpinus L.) inferred from mitochondrial DNA sequences. Evolution, 55, 573-586.
8. Camargo-Zorro M (1999) Biologia e estrutura populacional das espécies da família Sciaenidae (Pisces: Perciformes), no estuário do rio Caeté município de Bragança, Pará - Brasil. MSc Thesis, Universidade Federal do Pará.
9. Casey KS, Cornillon P (1999) A comparison of satellite and in situ-based sea surface temperature climatologies. Jounal of Climate, 12, 1848-1863.
10. Castro BM, Miranda LBDE (1998) Physical oceanography of the western Atlantic continental shelf located between 4°N and 34°S coastal segment (4,W). In: The Sea. VII (eds Robinson AR, Brink KH), pp. 209-251. John Wiley & Sons, New York.
11. Cervigón F (1993) Los Peces Marinos de Venezuela, V II, 2nd edn. Fundación Científica Los Roques, Caracas, Venezuela.
12. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
13. Colborn J, Crabtree RE, Shaklee JB, Pfeiler E, Bowen BW (2001) The evolutionary enigma of bonefishes (Albula spp.): cryptic species and ancient separations in a globally distributed shorefish. Evolution, 55, 807-820.
14. Damuth FM, Fairbridge RW (1970) Equatorial Atlantic deep-sea arkosic sands and ice-age aridity in tropical South America. Geological Society of America Bulletin, 81, 189-206.
15. Dawson MN, Staton JL, Jacobs DK (2001) Phylogeography of the tidewater goby, Eucyclogobius newberryi (Teleostei, Gobiidae), in coastal California. Evolution, 55, 1167-1179.
16. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
17. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
18. Foese R, Pauly D (2005) FISHBASE. World Wide Web electronic publication. www.fishbase.org, version (06/2005).
19. Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
20. Grant WS, Bowen BW (1998) Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of Heredity, 89, 415-426.
21. Grunwald C, Stabile J, Waldman JR, Gross R, Wirgin I (2002) Population genetics of shortnose sturgeon Acipenser brevirostrum based on mitochondrial DNA control region sequences. Molecular Ecology, 11, 1885-1898.
22. Gyllensten UB (1985) The genetic structure of fish: diferences in the intraspecific distribution of biochemical genetic variation between marine, anadromous, and freshwater species. Journal of Fish Biology, 26, 691-699.
23. Haimovici M, Martins AS, Vieira PC (1996) Distribuição e abundância de peixes teleósteos demersais sobre a plataforma continental do sul do Brasil. Revista Brasileira de Biologia, 56, 27-50.
24. Hall T (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
25. Harpending HC (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591-600.
26. Hartl DL, Clark AG (1997) Principles of Population Genetics, 3nd edn. Sinauer Associates, Sunderland, MA.
27. Hickerson MJ, Ross JRP (2001) Post-glacial population history and genetic structure of the northern clingfish (Gobbiesox meandricus), revealed from mtDNA analysis. Marine Biology, 138, 407-419.
28. Irwin DM, Kocher TD, Wilson AC (1991) Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution, 32, 128-144.
29. Isaac VJ, Braga TMP (1999) Rejeição de pescado nas pescarias da costa norte do Brasil. Arquivos de Ciências do Mar, 32, 39-54.
30. Johns WE, Lee TN, Beardsley RC et al. (1998) Annual cycle and variability of the North Brasil current. Journal of Physical Oceanography, 28, 103-128.
31. Joliffe IT (1986) Principal Component Analysis. Springer Verlag, New York.
32. Juras AA, Yamaguti N (1989) Sexual maturity, spawning and fecundity of King weakfish Macrodon ancylodon, caught off Rio Grande do Sul state (southern coast of Brazil). Boletim do Instituto Oceanográfico, São Paulo, 37, 51-58.
33. King TL, Kalinowski ST, Schill WB, Spindle AP, Lubinski BA (2001) Population structure of Atlantic salmon (Salmo salar L.): a range-wide perspective from microsatellite DNA variation. Molecular Ecology, 10, 807-821.
34. Knowlton N (2000) Molecular genetic analyses of species boundaries in the sea. Hydrobiologia, 420, 73-90.
35. Lara FJS (1951) A study of the history of Macrodon ancylodon (Block & Schneider), a Sciaenidae fish ocurring on the coast of southern Brazil. Anais da Academia Brasileira de Ciências, 23 (3), 291-322.
36. Lowe-McConnell RH (1999) Estudos Ecológicos de Comunidades de Peixes Tropicais. Edusp, São Paulo, Brazil.
37. Martin AP, Naylor GJP, Palumbi SR (1992) Rates of mitochondrial DNA evolution are slow compared with mammals. Nature, 357, 153-155.
38. McCune AR, Lovejoy NR (1998) The relative rate of sympatric and allopatric speciation in fishes: tests using DNA sequence divergence between sister species and among clades. In: Endless Forms: Species and Speciation (eds Howard DJ, Berlocher SH). Oxford University Press, Oxford.
39. Menezes NA, Figueiredo JL (1980) Manual de Peixes Marinhos do Sudeste do Brasil. Museu de Zoologia da Universidade de São Paulo, São Paulo, Brazil.
40. Meyer A (1990) Morphometrics and allometry in the trophically polymorphic cichlid fish Cichlasoma citrinellum: alternative adaptations and ontogenetic changes in shape. Journal of Zoology, 221, 237-260.
41. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
42. Nelson JS (1994) Fishes of the World, 3nd edn. John Wiley and Sons, Inc, New York.
43. Palumbi SR (1992) Marine speciation on a small planet. Trends in Ecology & Evolution, 7, 114-118.
44. Parsons K, Robinson B, Hrbek T (2003) Getting into shape: an empirical comparison of several traditional truss-based and a newer geometric morphometric method. Environmental Biology of Fishes, 67, 417-431.
45. Planes S, Doherty PJ, Bernardi G (2001) Strong genetic divergence among populations of a marine fish with limited dispersal, Acanthochromis polyacanthus, within the great barrier reef and the coral sea. Evolution, 55, 2263-2273.
46. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
47. Ramsey PR, Wakeman JM (1987) Population structure of Sciaenops ocellatus and Cynoscion nebulosus (Pisces: Sciaenidae): biochemical variation, genetic subdivision and dispersal. Copeia, 3, 682-695.
48. Rand DM (1996) Neutrality tests of molecular markers and the connections between DNA polymorphism, demography, and conservation biology. Conservation Biology, 10, 665-671.
49. Rocha LA, Robertson DR, Roman J, Bowen BW (2005) Ecological speciation in tropical reef fishes. Proceedings of the Royal Society of London. Series B, Biological Sciences, 272, 573-579.
50. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of paiwise differences. Molecular Biology and Evolution, 9, 552-559.
51. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2003) DNASP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
52. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Springs Harbor, NY.
53. Sanger F, Nichlen S, Coulson AR (1977) DNA sequencing with chain-termination inhibitors. Proceedings of the National Academy of Sciences, USA, 74, 5463-5468.
54. Santos S, Schneider H, Sampaio I (2003) Genetic differentiation of Macrodon ancylodon (Sciaenidae, Perciformes) populations in Atlantic coastal waters of South America as revealed by mtDNA analysis. Genetics and Molecular Biology, 26, 151-161.
55. Santos EP, Yamaguti N (1965) Migração da pescada-foguete, Macrodon ancylodon. Boletim do Instituto Oceanográfico, São Paulo, 14, 129-131.
56. Schmid C, Schafer H, Podestá G, Zenk W (1995) The Vitória Eddy and its relation to the Brazil Current. Journal of Physical Oceanography, 25, 2532-2546.
57. Schneider S, Excoffier L (1999) Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics, 152, 1079-1089.
58. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN version 2000: A software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
59. Schulte PM (2001) Environmental adaptations as windows on molecular evolution. Comparative biochemistry and physiology part B: Biochemistry and Molecular Biology, 128, 597-611.
60. Smith MF, Patton JL (1993) The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the Akodontine tribe. Biological Journal of the Linnean Society, 50, 149-177.
61. Sokal RR, Rohlf FJ (1994) BIOMETRY: the Principles and Practice of Statistics in Biological Research, 3nd edn. W.H. Freeman, New York.
62. Stepien CA, Rosenblatt RH, Bargmeyer BA (2001) Phylogeography of the spotted sand bass, Paralabrax maculatofasciatus: divergence of Gulf of California and Pacific coast populations. Evolution, 55, 1852-1862.
63. Strauss RE, Bookstein FL (1982) The truss: body form reconstructions in morphometrics. Systematic Zoology, 31, 113-135.
64. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Beta Version V4.10b. Sinauer Associates, Sunderland, MA.
65. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
66. Taylor EB, Dodson JJ (1994) A molecular analysis of relationships and biogeography within a species complex of Holarctic fish (genus Osmerus). Molecular Ecology, 3, 235-248.
67. Templeton AR (2004) Using haplotype trees for phylogeographic and species inference in fish populations. Environmental Biology of Fishes, 69, 7-20.
68. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659-669.
69. Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343-351.
70. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
71. Turner TF, Wares JP, Gold JR (2002) Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, estuarine-dependent marine fish (Sciaenops ocellatus). Genetics, 162, 1329-1339.
72. Ward RD, Woodwark M, Skibinski DOF (1994) A comparison genetic diversity levels in marine, freshwater, and anadromous fishes. Journal of Fish Biology, 44, 213-232.
73. Weir BS (1996) Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Associates, Sunderland, MA.
74. Yamaguti N (1967) Desova da pescada-foguete, Macrodon ancylodon. Boletim do Instituto Oceanográfico, São Paulo, 61, 101-106.
75. Yamaguti N (1979) Diferenciação geográfica de Macrodon ancylodon (Bloch & Schneider, 1801) na costa Brasileira entre as latitudes 18° 36′S e 32°10′S, etapa I. Boletim do Instituto Oceanográ Fico, São Paulo, 28, 53-118.