메뉴 건너뛰기




Volumn 42, Issue 1, 2007, Pages 256-271

Translating DNA data tables into quasi-median networks for parsimony analysis and error detection

Author keywords

Error detection; Filter analysis; Maximum parsimony; Quasi median network; Strong compatibility

Indexed keywords

DNA; MITOCHONDRIAL DNA;

EID: 33750998780     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.07.013     Document Type: Article
Times cited : (26)

References (42)
  • 2
    • 33750991188 scopus 로고    scopus 로고
    • Bandelt, H.-J., 2005. Exploring reticulate patterns in DNA sequence data. In: Bakker, F.T., Chatrou, L.W., Gravendeel B., Pelser, P.B. (Eds.), Plant Species-Level Systematics: New Perspectives on Pattern & Process. Regnum Vegetabile 142, Koeltz, Königstein, pp. 245-270.
  • 3
    • 0030534240 scopus 로고    scopus 로고
    • Graphs of acyclic cubical complexes
    • Bandelt H.-J., and Chepoi V. Graphs of acyclic cubical complexes. Eur. J. Combinatorics 17 (1996) 113-120
    • (1996) Eur. J. Combinatorics , vol.17 , pp. 113-120
    • Bandelt, H.-J.1    Chepoi, V.2
  • 5
    • 33645736733 scopus 로고    scopus 로고
    • Quality assessment of DNA sequence data: autopsy of a mis-sequenced mtDNA population sample
    • Bandelt H.-J., and Kivisild T. Quality assessment of DNA sequence data: autopsy of a mis-sequenced mtDNA population sample. Ann. Hum. Genet. 70 (2006) 314-326
    • (2006) Ann. Hum. Genet. , vol.70 , pp. 314-326
    • Bandelt, H.-J.1    Kivisild, T.2
  • 6
    • 33750976214 scopus 로고    scopus 로고
    • Bandelt, H.-J., Röhl, A. Quasi-median hulls in Hamming space are Steiner hulls, submitted for publication.
  • 7
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H.-J., Forster P., and Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16 (1999) 37-48
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 37-48
    • Bandelt, H.-J.1    Forster, P.2    Röhl, A.3
  • 8
    • 0033928911 scopus 로고    scopus 로고
    • Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA
    • Bandelt H.-J., Macaulay V., and Richards M. Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. Mol. Phylogenet. Evol. 16 (2000) 8-28
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 8-28
    • Bandelt, H.-J.1    Macaulay, V.2    Richards, M.3
  • 12
    • 33750985798 scopus 로고    scopus 로고
    • Estimation of mutation rates and coalescence times: some caveats
    • Bandelt H.-J., Macaulay V., and Richards M. (Eds), Springer Verlag, Berlin, Heidelberg
    • Bandelt H.-J., Kong Q.-P., Richards M., and Macaulay V. Estimation of mutation rates and coalescence times: some caveats. In: Bandelt H.-J., Macaulay V., and Richards M. (Eds). Human Mitochondrial DNA and the Evolution of Homo sapiens (2006), Springer Verlag, Berlin, Heidelberg 47-92
    • (2006) Human Mitochondrial DNA and the Evolution of Homo sapiens , pp. 47-92
    • Bandelt, H.-J.1    Kong, Q.-P.2    Richards, M.3    Macaulay, V.4
  • 13
    • 51249181542 scopus 로고
    • On the existence of subalgebras of direct products with prescribed α-fold projections
    • Bergman G. On the existence of subalgebras of direct products with prescribed α-fold projections. Alg. Univ. 7 (1977) 341-356
    • (1977) Alg. Univ. , vol.7 , pp. 341-356
    • Bergman, G.1
  • 14
    • 6344272221 scopus 로고    scopus 로고
    • Mitochondrial DNA control region sequences from Nairobi (Kenya): inferring phylogenetic parameters for the establishment of a forensic database
    • Brandstätter A., Peterson C.T., Irwin J.A., Mpoke S., Koech D.K., Parson W., and Parsons T.J. Mitochondrial DNA control region sequences from Nairobi (Kenya): inferring phylogenetic parameters for the establishment of a forensic database. Int. J. Legal. Med. 118 (2004) 294-306
    • (2004) Int. J. Legal. Med. , vol.118 , pp. 294-306
    • Brandstätter, A.1    Peterson, C.T.2    Irwin, J.A.3    Mpoke, S.4    Koech, D.K.5    Parson, W.6    Parsons, T.J.7
  • 16
    • 85167647149 scopus 로고    scopus 로고
    • Brandstätter, A., Niederstätter, H., Pavlic, M., Grubwieser, P., Parson, W., 2006a. Generating population data for the EMPOP database - an overview of mtDNA sequencing, evaluation and validation processes considering 273 Austrian control region sequences as example. Forensic Sci. Int., in press.
  • 17
    • 33747371721 scopus 로고    scopus 로고
    • Brandstätter, A., Klein, R., Duftner, N., Wiegand, P., Parson, W., 2006b. Application of a quasi-median network analysis for the visualization of character conflicts to a population sample of mitochondrial DNA control region sequences from southern Germany (Ulm). Int. J. Legal Med., in press.
  • 18
    • 0020328686 scopus 로고
    • Mitochondrial DNA sequences of primates: tempo and mode of evolution
    • Brown W.M., Prager E.M., Wang A., and Wilson A.C. Mitochondrial DNA sequences of primates: tempo and mode of evolution. J. Mol. Evol. 18 (1982) 225-239
    • (1982) J. Mol. Evol. , vol.18 , pp. 225-239
    • Brown, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 19
    • 0242354083 scopus 로고    scopus 로고
    • DNA markers reveal the complexity of livestock domestication
    • Bruford M.W., Bradley D.G., and Luikart G. DNA markers reveal the complexity of livestock domestication. Nat. Rev. Genet. 4 (2003) 900-910
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 900-910
    • Bruford, M.W.1    Bradley, D.G.2    Luikart, G.3
  • 20
    • 0031185302 scopus 로고    scopus 로고
    • Trees, taxonomy, and multi-state strongly compatible characters
    • Dress A., Moulton V., and Steel M. Trees, taxonomy, and multi-state strongly compatible characters. Adv. Appl. Math. 19 (1997) 1-30
    • (1997) Adv. Appl. Math. , vol.19 , pp. 1-30
    • Dress, A.1    Moulton, V.2    Steel, M.3
  • 21
    • 0002511486 scopus 로고
    • The dual discriminator in universal algebra
    • Fried E., and Pixley A.F. The dual discriminator in universal algebra. Acta. Sci. Math. (Szeged) 41 (1979) 83-100
    • (1979) Acta. Sci. Math. (Szeged) , vol.41 , pp. 83-100
    • Fried, E.1    Pixley, A.F.2
  • 24
    • 33644875533 scopus 로고    scopus 로고
    • mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
    • Ingman M., and Gyllensten U. mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences. Nucl. Acids Res. 34 (2006) D749-D751
    • (2006) Nucl. Acids Res. , vol.34
    • Ingman, M.1    Gyllensten, U.2
  • 30
    • 0011188394 scopus 로고    scopus 로고
    • The mtDNA Population Database: an integrated software and database resource for forensic comparison
    • Monson K.L., Miller K.W.P., Wilson M.R., DiZinno J.A., and Budowle B. The mtDNA Population Database: an integrated software and database resource for forensic comparison. Forensic Sci. Commun. 4 2 (2002)
    • (2002) Forensic Sci. Commun. , vol.4 , Issue.2
    • Monson, K.L.1    Miller, K.W.P.2    Wilson, M.R.3    DiZinno, J.A.4    Budowle, B.5
  • 32
    • 0035821704 scopus 로고    scopus 로고
    • Mitochondrial DNA variation and language replacements in the Caucasus
    • Nasidze I., and Stoneking M. Mitochondrial DNA variation and language replacements in the Caucasus. Proc. R. Soc. Lond. B Biol. Sci. 268 (2001) 1197-1206
    • (2001) Proc. R. Soc. Lond. B Biol. Sci. , vol.268 , pp. 1197-1206
    • Nasidze, I.1    Stoneking, M.2
  • 37
    • 33751001887 scopus 로고
    • A duality for isotropic median algebras
    • Ploščica M. A duality for isotropic median algebras. Comment. Math. Univ. Carolin. 33 (1992) 541-550
    • (1992) Comment. Math. Univ. Carolin. , vol.33 , pp. 541-550
    • Ploščica, M.1
  • 38
    • 18944393988 scopus 로고    scopus 로고
    • Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages
    • Rajkumar R., Banerjee J., Gunturi H.B., Trivedi R., and Kashyap V.K. Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages. BMC Evol. Biol. 5 (2005) 26
    • (2005) BMC Evol. Biol. , vol.5 , pp. 26
    • Rajkumar, R.1    Banerjee, J.2    Gunturi, H.B.3    Trivedi, R.4    Kashyap, V.K.5
  • 42
    • 33344466214 scopus 로고    scopus 로고
    • Documenting domestication: the intersection of genetics and archaeology
    • Zeder M.A., Emshwiller E., Smith B.D., and Bradley D.G. Documenting domestication: the intersection of genetics and archaeology. Trends Genet. 22 (2006) 139-155
    • (2006) Trends Genet. , vol.22 , pp. 139-155
    • Zeder, M.A.1    Emshwiller, E.2    Smith, B.D.3    Bradley, D.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.