-
2
-
-
0000342467
-
Statistical inference for probabilistic functions of finite state Markov chains
-
Baum, L. & Petrie, T. (1966). Statistical inference for probabilistic functions of finite state Markov chains. Ann. Math. Statis. 37, 1554-1563.
-
(1966)
Ann. Math. Statis.
, vol.37
, pp. 1554-1563
-
-
Baum, L.1
Petrie, T.2
-
3
-
-
0022474446
-
Maximum likelihood alignment of DNA sequences
-
Bishop, M. & Thompson, E. (1986). Maximum likelihood alignment of DNA sequences. J. Mol. Biol. 190, 159-165.
-
(1986)
J. Mol. Biol.
, vol.190
, pp. 159-165
-
-
Bishop, M.1
Thompson, E.2
-
4
-
-
0036648783
-
Convergence of the maximum a posteriori path estimator in hidden Markov models
-
Caliebe, A. & Rösler, U. (2002). Convergence of the maximum a posteriori path estimator in hidden Markov models. IEEE Trans. Inf. Theory 48, 1750-1758.
-
(2002)
IEEE Trans. Inf. Theory
, vol.48
, pp. 1750-1758
-
-
Caliebe, A.1
Rösler, U.2
-
5
-
-
84889281816
-
-
Wiley Series in Telecommunications. John Wiley & Sons, New York, NY, USA
-
Cover, T. M. & Thomas, J. A. (1991). Elements of information theory. Wiley Series in Telecommunications. John Wiley & Sons, New York, NY, USA.
-
(1991)
Elements of Information Theory
-
-
Cover, T.M.1
Thomas, J.A.2
-
6
-
-
0003966087
-
Information theory. Coding theorems for discrete memoryless systems
-
Academic Press, New York
-
Csiszár, I. & Körner, J. (1981). Information theory. Coding theorems for discrete memoryless systems. Probability and mathematical statistics. Academic Press, New York.
-
(1981)
Probability and Mathematical Statistics
-
-
Csiszár, I.1
Körner, J.2
-
7
-
-
0035246117
-
Reliable communication over channels with insertions, deletions, and substitutions
-
Davey, M. C. & MacKay, D. J. (2001). Reliable communication over channels with insertions, deletions, and substitutions. IEEE Trans. Inf. Theory 47, 687-698.
-
(2001)
IEEE Trans. Inf. Theory
, vol.47
, pp. 687-698
-
-
Davey, M.C.1
MacKay, D.J.2
-
8
-
-
0003516147
-
-
Cambridge University Press, Cambridge, UK
-
Durbin, R., Eddy, S., Krogh, A. & Mitchison, G. (1998). Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge University Press, Cambridge, UK.
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
9
-
-
0034623015
-
Statistical alignment: Computational properties, homology testing and goodness-of-fit
-
Hein, J., Wiuf, C., Knudsen, B., Moller, M. & Wibling, G. (2000). Statistical alignment: computational properties, homology testing and goodness-of-fit. J. Mol. Biol. 302, 265-279.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 265-279
-
-
Hein, J.1
Wiuf, C.2
Knudsen, B.3
Moller, M.4
Wibling, G.5
-
10
-
-
15944375449
-
Applications of hidden Markov models for characterization of homologous DNA sequences with a common gene
-
Hobolth, A. & Jensen, J. L. (2005). Applications of hidden Markov models for characterization of homologous DNA sequences with a common gene. J. Comput. Biol. 12, 186-203.
-
(2005)
J. Comput. Biol.
, vol.12
, pp. 186-203
-
-
Hobolth, A.1
Jensen, J.L.2
-
11
-
-
19544384204
-
Using evolutionary expectation maximization to estimate indel rates
-
Holmes, I. (2005). Using evolutionary expectation maximization to estimate indel rates. Bioinformatics 21, 2294-2300.
-
(2005)
Bioinformatics
, vol.21
, pp. 2294-2300
-
-
Holmes, I.1
-
12
-
-
0003789496
-
Statistical estimation. Asymptotic theory
-
Springer-Verlag, New York
-
Ibragimov, I. A. & Has'minskii, R. Z. (1981). Statistical estimation. Asymptotic theory. Applications of mathematics, Vol. 16. Springer-Verlag, New York.
-
(1981)
Applications of Mathematics
, vol.16
-
-
Ibragimov, I.A.1
Has'Minskii, R.Z.2
-
14
-
-
0141869092
-
Sequence alignments and pair hidden Markov models using evolutionary history
-
Knudsen, B. & Miyamoto, M. M. (2003). Sequence alignments and pair hidden Markov models using evolutionary history. J. Mol. Biol. 333, 453-460.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 453-460
-
-
Knudsen, B.1
Miyamoto, M.M.2
-
15
-
-
0001572082
-
Maximum-likelihood estimation for hidden Markov models
-
Leroux, B. G. (1992). Maximum-likelihood estimation for hidden Markov models. Stochastic Process. Appl. 40, 127-143.
-
(1992)
Stochastic Process. Appl.
, vol.40
, pp. 127-143
-
-
Leroux, B.G.1
-
16
-
-
0035089745
-
Efficient reconstruction of sequences
-
Levenshtein, V. I. (2001). Efficient reconstruction of sequences. IEEE Trans. Inf. Theory 47, 2-22.
-
(2001)
IEEE Trans. Inf. Theory
, vol.47
, pp. 2-22
-
-
Levenshtein, V.I.1
-
17
-
-
0037339432
-
Statistical alignment based on fragment insertion and deletion models
-
Metzler, D. (2003). Statistical alignment based on fragment insertion and deletion models. Bioinformatics 19, 490-499.
-
(2003)
Bioinformatics
, vol.19
, pp. 490-499
-
-
Metzler, D.1
-
18
-
-
0036772510
-
Comparative ab initio prediction of gene structures using pair HMMs
-
Meyer, I. M. & Durbin, R. (2002). Comparative ab initio prediction of gene structures using pair HMMs. Bioinformatics 18, 1309-1318.
-
(2002)
Bioinformatics
, vol.18
, pp. 1309-1318
-
-
Meyer, I.M.1
Durbin, R.2
-
19
-
-
1542510093
-
A "long indel" model for evolutionary sequence alignment
-
Miklos, I., Lunter, G. A. & Holmes, I. (2004). A "long indel" model for evolutionary sequence alignment. Mol. Biol. Evol. 21, 529-540.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 529-540
-
-
Miklos, I.1
Lunter, G.A.2
Holmes, I.3
-
20
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S. & Wunsch, C. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
21
-
-
0036112213
-
Applications of generalized pair hidden Markov models to alignment and gene finding problems
-
Pachter, L., Alexandersson, M. & Cawley, S. (2002). Applications of generalized pair hidden Markov models to alignment and gene finding problems. J. Comput. Biol. 9, 389-399.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 389-399
-
-
Pachter, L.1
Alexandersson, M.2
Cawley, S.3
-
22
-
-
33751008827
-
On mixing and the Zero-One law
-
Sucheston, L. (1963). On mixing and the Zero-One law. J. Math. Anal. Appl. 6, 447-456.
-
(1963)
J. Math. Anal. Appl.
, vol.6
, pp. 447-456
-
-
Sucheston, L.1
-
23
-
-
0026079507
-
An evolutionary model for maximum likelihood alignment of DNA sequences
-
Thorne, J., Kishino, H. & Felsenstein, J. (1991). An evolutionary model for maximum likelihood alignment of DNA sequences. J. Mol. Evol. 33, 114-124.
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 114-124
-
-
Thorne, J.1
Kishino, H.2
Felsenstein, J.3
-
24
-
-
0026528734
-
Inching toward reality: An improved likelihood model of sequence evolution
-
Thorne, J., Kishino, H. & Felsenstein, J. (1992). Inching toward reality: an improved likelihood model of sequence evolution. J. Mol. Evol. 34, 3-16.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 3-16
-
-
Thorne, J.1
Kishino, H.2
Felsenstein, J.3
|