Identification and characterization of microsatellites for striped bass from repeat-enriched libraries

Conservation Genetics

Volumn 7, Issue 6, 2006, Pages 971-982

  Rexroad, Caird ^a   Vallejo, Roger ^a   Coulibaly, Issa ^a   Couch, Charlene ^b   Garber, Amber ^b   Westerman, Mark ^c   Sullivan, Craig ^b  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c Kent SeaTech Corporation   (United States)

Author keywords

Breeding; Genetics; Heterozygosity; Microsatellite; Striped bass

Indexed keywords

FISH; GENETIC MARKER; IDENTIFICATION METHOD; INBREEDING; MANAGEMENT PRACTICE; MIGRATION; POPULATION GENETICS;

ATLANTIC COAST [NORTH AMERICA]; ATLANTIC COAST [UNITED STATES]; ATLANTIC OCEAN; GULF OF MEXICO; NORTH AMERICA; UNITED STATES;

MORONE SAXATILIS;

EID: 33750958478     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-006-9122-0     Document Type: Article

References (16)

1. Bielawski JP, Pumo DE (1997) Randomly amplified polymorphic DNA (RAPD) analysis of Atlantic Coast striped bass. Heredity, 78(Pt 1), 32-40.
2. Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques, 31, 24-26, 28.
3. Brown KM, Baltazar GA, Hamilton MB (2005) Reconciling nuclear microsatellite and mitochondrial marker estimates of population structure: breeding population structure of Chesapeake Bay striped bass (Morone saxatilis). Heredity, 94, 606-615.
4. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res., 8, 175-185.
5. Han K, Li L, Leclerc GM, Hays AM, Ely B (2000) Isolation and characterization of microsatellite loci for striped bass (Morone saxatilis). Mar. Biotechnol., (NY), 2, 405-408.
6. Leclerc GM, Diaz M, Ely B (1996) Use of PCR-RFLP assays to detect genetic variation at single-copy nuclear loci in striped bass (Morone saxatilis). Mol. Mar. Biol. Biotechnol., 5, 138-144.
7. Peacock M, Kirchoff V, Merideth S (2002) Identification and characterization of nine polymorphic microsatellite loci in the North American pika, Ochotono princeps. Mol. Ecol. Notes, 2, 360-362.
8. Raymond M, Rousset F (1995) GENEPOP (v.1.2) A population genetics software for exact tests and ecumenicism. J. Heredity, 86, 248-249.
9. Ross K, Wang X, O'Malley KG, Gatlin DM, Gold JR (2004) Microsatellite DNA markers for parental assignment in hybrid striped bass (Morone saxatilis x Morone chrysops). Mol. Ecol. Notes, 4, 156-159.
10. Roy NK, MacEda L, Wirgin I (2000) Isolation of microsatellites in striped bass Morone saxatilis (Teleostei) and their preliminary use in population identification. Mol. Ecol., 9, 827-829.
11. Rychlik W, Rhoads RE (1989) A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA. Nucleic Acids Res., 17, 8543-8551.
12. Sambrook J, Russell D (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y..
13. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver. 2.000: A Software for Population Genetics Data Analysis, Genetics and Biometry Laboratory, University of Geneva, Switzerland.
14. Wirgin I, Grunwald C, Garte S, Mesing C (1991) Use of DNAfingerprinting in the identification and management of a striped bass population in the southeastern United States. Trans. Am. Fish. Soc., 120, 273-281.
15. Wirgin I, Maceda L, Stabile J, Mesing C (1997) An evaluation of introgression of Atlantic coast striped bass mitochondrial DNA in a Gulf of Mexico population using formalin-preserved museum collections. Mol. Ecol., 6, 907-916.
16. Wirgin I, Maceda L, Waldman J, Crittenden R (1993) Use of mitochondrial DNA polymorphisms to estimate the relative contributions of Hudson River and Chesapeake Bay striped bass stocks to the mixed fishery on the Atlantic Coast. Trans. Am. Fish. Soc., 121, 669-684.