Phylogenetic analysis based on ITS sequences and conditions affecting the type of conidial germination of Bipolaris oryzae

Plant Pathology

Volumn 55, Issue 6, 2006, Pages 756-765

  Dela Paz, M A G ^a,d   Goodwin, P H ^b   Raymundo, A K ^a   Ardales, E Y ^c   Cruz, C M Vera ^d  

^a UNIVERSITY OF THE PHILIPPINES LOS BAÑOS   (Philippines)

^b UNIVERSITY OF GUELPH   (Canada)

^c UPLB College   (Philippines)

^d INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Bipolar germination; Bipolaris oryzae; Brown spot of rice; Cochliobolus; Conidial germination; Oryza sativa

Indexed keywords

ANALYTICAL METHOD; DISEASE INCIDENCE; DNA; FUNGUS; GERMINATION; PATHOGEN; PHYLOGENETICS; PLANT; RICE; SPORE; TAXONOMY;

ASIA; CAVINTI; EURASIA; LAGUNA; PALAWAN; PHILIPPINES; SAN PABLO; SOUTHEAST ASIA; SOUTHERN TAGALOG;

BACTERIA (MICROORGANISMS); BIPOLARIS; BIPOLARIS ORYZAE; COCHLIOBOLUS; DRECHSLERA; ORYCTOLAGUS CUNICULUS; ORYZA SATIVA; PUNCTUM BLANDIANUM;

EID: 33750938986     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2006.01439.x     Document Type: Article

References (31)

1. Alcorn JL, 1983. Generic concepts in Drechslera, Bipolaris and Exserohilum. Mycotaxon 17, 12-86.
2. Alcorn JL, 1988. The taxonomy of 'Helminthosporium' species. Annual Review of Phytopathology 26, 37-56.
3. Berbee ML, Pirseyedi M, Hubbard S, 1999. Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91, 964-77.
4. Domsch KH, 1980. Compendium of Soil Fungi. London: Academic Press, 141-2.
5. Drechsler C, 1934. Phytopathological and taxonomic aspects of Ophiobolus, Pyrenophora, Helminthosporium, and a new genus, Cochliobolus. Phytopathology 24, 953-83.
6. Estrada AB, 1984. Selection of differential varieties for race study of Helminthosporium oryzae. College, Laguna, the Philippines: University of the Philippines at Los Baños, MS thesis.
7. Hau F, Rush M, 1980. A system for inducing sporulation of Bipolaris oryzae. Plant Disease 64, 788-9.
8. Imam F, Schroeder H, 1966. Kernel infection of Bluebonnet 50 rice by Helminthosporium oryzae. Phytopathology 56, 507-9.
9. Ito S, 1930. On some new ascigerous stages of the species of Helminthosporium parasitic on cereals. Proceedings of the Imperial Academy of Japan 6, 352-5.
10. Ito S, Kuribayashi K, 1927. Production of ascigerous stage in culture of Helminthosporium oryzae. Annals of the Phytopathological Society of Japan 2, 1-8.
11. Leonard KJ, Suggs EG, 1974. Setosphaeria prolata, the ascigerous state of Exserohilum prolatum. Mycologia 66, 281-97.
12. Luh BS, 1991. Rice Production, Vol. I, 2nd edn. New York, USA: Van Nostrand Reinhold, 204-7.
13. Luttrell ES, 1963. Taxonomic criteria in Helminthosporium. Mycologia 55, 643-74.
14. Luttrell ES, 1977. Correlations between conidial and ascigerous state characters in Pyrenophora, Cochliobolus and Setosphaeria. Revue de Mycologie 41, 271-9.
15. Luttrell ES, 1978. Biosystematics of Helminthosporium: impact on agriculture. In: Romberger JA, Foote R, Knutson L, Lentz P, eds. Biosystematics in Agriculture, Beltsville Symposia in Agriculture. Montclair, NJ, USA: Allanheld, Osmun & Co., 193-209.
16. Mathur SB, Kongsdal O, 2003. Common Laboratory Seed Health Testing Methods for Detecting Fungi. Zurich, Switzerland: International Seed Testing Association, 150-1.
17. Mew TW, Gonzales P, 2002. A Handbook of Rice Seedborne Fungi. Los Baños, Laguna, Philippines/Enfield, NH, USA: International Rice Research Institute/Science Publishers, Inc., 83.
18. Noble M, 1965. Introduction to Series 3 of the Handbook on Seed Health Testing. Proceedings of the International Seed Testing Association 30, 1073-4.
19. Ocfemia GO, 1924. The Helminthosporium disease of rice occurring in the southern United States and in the Philippines. American Journal of Botany 11, 385-408.
20. Olivier C, Berbee ML, Shoemaker RA, Loria R, 2000. Molecular phylogenetic support from ribosomal DNA sequences for origin of Helminthosporium from Leptosphaeria-like loculoascomycete ancestors. Mycologia 92, 736-46.
21. Ou SH, 1985. Rice Diseases, 2nd edn. Kew, UK: Commonwealth Mycological Institute, 201-22.
22. Padmanabhan SY, 1973. The Great Bengal famine. Annual Review of Phytopathology 11, 11-26.
23. Saitou N, Nei M, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-25.
24. Sambrook J, Fritsch EF, Maniatis T, 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
25. Shoemaker RA, 1959. Nomenclature of Drechslera and Bipolaris, grass parasites segregated from Helminthosporium. Canadian Journal of Botany 37, 879-87.
26. Shoemaker RA, 1962. Drechslera Ito. Canadian Journal of Botany 40, 809-36.
27. Subramanian CV, 1974. Hyphomycetes: an Account of Indian Species, except Cercosporae. New Delhi, India: Indian Council of Agricultural Research, 744-64.
28. Subramanian CV, Jain BL, 1966. A revision of some graminicolous Helminthosporia. Current Science 14, 352-5.
29. Thompson J, Higgins D, Gibson T, 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-80.
30. White TJ, Bruns T, Lee S, Taylor J, 1990. Amplification and direct sequences of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols. San Diego, CA, USA: Academic Press, 315-22.
31. Zhang G, Berbee M, 2001. Pyrenophora phylogenetics inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 93, 1048-63.