-
1
-
-
0035104866
-
Automated extraction of information on protein-protein interactions from the biological literature
-
Ono T., Hishigaki H., Tanigami A., and Takagi T. Automated extraction of information on protein-protein interactions from the biological literature. Bioinformatics 17 (2001) 155-161
-
(2001)
Bioinformatics
, vol.17
, pp. 155-161
-
-
Ono, T.1
Hishigaki, H.2
Tanigami, A.3
Takagi, T.4
-
2
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
Jenssen T.-K., Laegreid A., Komorowski J., and Hovig E. A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 28 (2001) 21-28
-
(2001)
Nat Genet
, vol.28
, pp. 21-28
-
-
Jenssen, T.-K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
3
-
-
0035002541
-
Mining literature for protein-protein interactions
-
Marcotte E., Xenarios I., and Eisenberg D. Mining literature for protein-protein interactions. Bioinformatics 17 (2001) 359-363
-
(2001)
Bioinformatics
, vol.17
, pp. 359-363
-
-
Marcotte, E.1
Xenarios, I.2
Eisenberg, D.3
-
4
-
-
33750811251
-
-
Stapley BJ, Benoit G. Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts. In: Proceedings of the Pacific symposium on biocomputing; 2000. p. 526-37.
-
-
-
-
5
-
-
0001413266
-
Toward routine automatic pathway discovery from on-line scientific text abstracts
-
Ng S.-K., and Wong M. Toward routine automatic pathway discovery from on-line scientific text abstracts. Genome Inform 10 (1999) 104-112
-
(1999)
Genome Inform
, vol.10
, pp. 104-112
-
-
Ng, S.-K.1
Wong, M.2
-
6
-
-
0033292011
-
-
Blaschke C, Andrade MA, Ouzounis C, Valencia A. Automatic extraction of biological information from scientific text: protein-protein interactions. In: Proceedings of the AAAI conference on intelligent systems for molecular biology; 1999. p. 60-7.
-
-
-
-
7
-
-
0033657262
-
-
Thomas J, Milward D, Ouzounis C, Pulman S, Carroll M. Automatic extraction of protein interactions from scientific abstracts. In: Proceedings of the pacific symposium on biocomputing. Hawaii; 2000. p. 541-51.
-
-
-
-
8
-
-
0035236048
-
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
-
Friedman C., Kra P., Yu H., Krauthammer M., and Rzhetsky A. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 17 (2001) 74-82
-
(2001)
Bioinformatics
, vol.17
, pp. 74-82
-
-
Friedman, C.1
Kra, P.2
Yu, H.3
Krauthammer, M.4
Rzhetsky, A.5
-
9
-
-
33750810082
-
-
Rindflesch TC, Tanabe L, Weinstein JN, Hunter L. Edgar: extraction of drugs, genes and relations from the biomedical literature. In: Proceedings of the Pacific symposium on biocomputing. Hawaii; 2000.
-
-
-
-
10
-
-
0032795144
-
MedMiner: an internet text-mining tool for biomedical information, with application to gene expression profiling
-
Tanabe L., Scherf U., Smith L.H., Lee J.K., Hunter L., and Weinstein J.N. MedMiner: an internet text-mining tool for biomedical information, with application to gene expression profiling. BioTechniques 27 (1999) 1210-1217
-
(1999)
BioTechniques
, vol.27
, pp. 1210-1217
-
-
Tanabe, L.1
Scherf, U.2
Smith, L.H.3
Lee, J.K.4
Hunter, L.5
Weinstein, J.N.6
-
11
-
-
8444226720
-
Term identification in the biomedical literature
-
Krauthammer M., and Nenadic G. Term identification in the biomedical literature. J Biomed Inform 37 (2004) 512-526
-
(2004)
J Biomed Inform
, vol.37
, pp. 512-526
-
-
Krauthammer, M.1
Nenadic, G.2
-
12
-
-
33750812073
-
-
Li Q, Wu YB, Bot RS, Chen X. Incorporating document keyphrases in search results. In: Proceedings of the tenth Americas conference on information systems, New York, New York; 2004.
-
-
-
-
13
-
-
0036603927
-
Automatic extraction of document keyphrases for use in digital libraries: evaluation and applications
-
Jones S., and Paynter G.W. Automatic extraction of document keyphrases for use in digital libraries: evaluation and applications. J Am Soc Inf Sci Technol 53 8 (2000) 653-677
-
(2000)
J Am Soc Inf Sci Technol
, vol.53
, Issue.8
, pp. 653-677
-
-
Jones, S.1
Paynter, G.W.2
-
14
-
-
0033308243
-
Improving browsing in digital libraries with keyphrase indexes
-
Gutwin C., Paynter G., Witten I.H., Nevill-Manning C., and Frank E. Improving browsing in digital libraries with keyphrase indexes. J Decis Support Syst 27 1-2 (1999) 81-104
-
(1999)
J Decis Support Syst
, vol.27
, Issue.1-2
, pp. 81-104
-
-
Gutwin, C.1
Paynter, G.2
Witten, I.H.3
Nevill-Manning, C.4
Frank, E.5
-
15
-
-
33750840133
-
-
Jonse S, Mahoui M. Hierarchical document clustering using automatically extracted keyphrase. In: Proceedings of the third international Asian conference on digital libraries. Seoul, Korea. 2000; p. 113-20.
-
-
-
-
17
-
-
33745775246
-
-
Wu YB, Li Q, Bot R, Chen X. Domain-specific keyphrase extraction. In: Conference on information and knowledge management, Bremen, Germany; 2005.
-
-
-
-
18
-
-
84982440478
-
The use of phrases and structured queries in information retrieval
-
ACM Press, Philadelphia, PA
-
Croft B., Turtle H., and Lewis D. The use of phrases and structured queries in information retrieval. Proceedings of the SIGIR'91: the 14th annual international conference on research and development in information retrieval (1991), ACM Press, Philadelphia, PA
-
(1991)
Proceedings of the SIGIR'91: the 14th annual international conference on research and development in information retrieval
-
-
Croft, B.1
Turtle, H.2
Lewis, D.3
-
19
-
-
33750843839
-
-
Edgar KD, Nichols DM, Paynter G, Thomson K, Witten IH. A user evaluation of hierarchical phrase browsing. In: Proceedings of the 7th European conference on research and advanced technology for digital libraries, Trondheim, Norway; 2003.
-
-
-
-
20
-
-
0024622859
-
The effectiveness of a nonsyntactic approach to automatic phrase indexing for document retrieval
-
Fagan J.L. The effectiveness of a nonsyntactic approach to automatic phrase indexing for document retrieval. J Am Soc Inf Sci 40 2 (1989) 115-132
-
(1989)
J Am Soc Inf Sci
, vol.40
, Issue.2
, pp. 115-132
-
-
Fagan, J.L.1
-
21
-
-
0001461487
-
Exploiting a large thesaurus for information retrieval
-
Aronson A.R., Rindflesch T.C., and Browne A.C. Exploiting a large thesaurus for information retrieval. Proc. RIAO (1994) 197-216
-
(1994)
Proc. RIAO
, pp. 197-216
-
-
Aronson, A.R.1
Rindflesch, T.C.2
Browne, A.C.3
-
22
-
-
0035133051
-
UMLS concept indexing for production databases: a feasibility study
-
Nadkarni P., Chen D., and Brandt D. UMLS concept indexing for production databases: a feasibility study. J Am Med Inform Association 8 (2001) 80-91
-
(2001)
J Am Med Inform Association
, vol.8
, pp. 80-91
-
-
Nadkarni, P.1
Chen, D.2
Brandt, D.3
-
23
-
-
0034571257
-
-
Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, The NLM indexing initiative. In: Proceedings of the AMIA Symposium; 2000. p. 17-21.
-
-
-
-
24
-
-
0033294891
-
Grouper: a dynamic clustering interface to web search results
-
Zamir O., and Etzioni O. Grouper: a dynamic clustering interface to web search results. Comput Netw ISDN Syst 31 11-16 (1999) 1361-1374
-
(1999)
Comput Netw ISDN Syst
, vol.31
, Issue.11-16
, pp. 1361-1374
-
-
Zamir, O.1
Etzioni, O.2
-
26
-
-
33750799982
-
-
Blake C, Pratt W. A semantic approach to identify candidate treatments from existing medical literature. In: AAAI symposium on knowledge-based approaches. Stanford, CA; 2002.
-
-
-
-
27
-
-
2442547709
-
-
Kumar K, Palakal M, Mukhopadhyay S, Stephens M, Li H. BioMap: toward the development of a knowledge base of biomedical literature. In: 2004 ACM symposium on applied computing, Nicosia, Cyprus; 2004. p. 121-27.
-
-
-
-
28
-
-
0035752429
-
-
Aronson AR. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. In: Proceedings of AMIA Symposium; 2001. p. 17-21.
-
-
-
-
29
-
-
0028249078
-
-
McCray AT, Srinivasan S, Browne AC. Lexical methods for managing variation in biomedical terminologies. In: Ozbolt JG, editor. Proceedings of the 18th SCAMC; 1994. p. 235-39.
-
-
-
-
30
-
-
4544280638
-
Automated encoding of clinical documents based on natural language processing
-
Friedman C., Shagina L., Lussier Y., and Hripcsak G. Automated encoding of clinical documents based on natural language processing. J Am Med Inform Assoc 11 (2004) 392-402
-
(2004)
J Am Med Inform Assoc
, vol.11
, pp. 392-402
-
-
Friedman, C.1
Shagina, L.2
Lussier, Y.3
Hripcsak, G.4
-
31
-
-
0032944686
-
A semantic lexicon for medical language processing
-
Johnson S.B. A semantic lexicon for medical language processing. J Am Med Inform Assoc 6 3 (1999) 205-218
-
(1999)
J Am Med Inform Assoc
, vol.6
, Issue.3
, pp. 205-218
-
-
Johnson, S.B.1
-
32
-
-
33750798428
-
-
Bodenreider O, Rindflesch C, Burgun A. Unsupervised, corpus-based method for extending a biomedical terminology. In: Proceedings of the workshop on natural language processing in the biomedical domain. Philadelphia; July 2002. p. 53-60.
-
-
-
-
33
-
-
0002834444
-
Extracting molecular binding relationships from biomedical text
-
Rindflesch T.C., Rajan J.V., and Hunter L. Extracting molecular binding relationships from biomedical text. Appl Nat Lang Process (2000) 188-195
-
(2000)
Appl Nat Lang Process
, pp. 188-195
-
-
Rindflesch, T.C.1
Rajan, J.V.2
Hunter, L.3
-
34
-
-
33750796546
-
-
Cutting DR, Kupiec J, Pedersen JO, Sibun PA. practical part-of-speech tagger. In: Proceedings of the third conference on applied natural language processing; 1992.
-
-
-
-
35
-
-
0033643234
-
-
Demetriou G, Humphreys K, Gaizauskas R. Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures. In: Proceedings of the pacific symposium on biocomputing. Hawaii, USA; 2000.
-
-
-
-
36
-
-
33750810328
-
-
Sekimizu T, Park HS, Tsujii J. Identifying the interaction between genes and gene products based on frequently seen verbs in Medline abstracts. Genome Inform Ser Workshop 1998.
-
-
-
-
37
-
-
0030783429
-
A concept space approach to addressing the vocabulary switching problem in scientific information retrieval: an experiment on the worm community system
-
Chen H., Ng T.D., Martinez J., and Schatz B.R. A concept space approach to addressing the vocabulary switching problem in scientific information retrieval: an experiment on the worm community system. J. Am. Soc. Inform. Sci. Technol. 48 1 (1997) 17-31
-
(1997)
J. Am. Soc. Inform. Sci. Technol.
, vol.48
, Issue.1
, pp. 17-31
-
-
Chen, H.1
Ng, T.D.2
Martinez, J.3
Schatz, B.R.4
-
38
-
-
0033258510
-
-
Bennett NA, He Q, Powell K, Schatz BR. Extracting noun phrases for all of MEDLINE. In: Proceedings of the AMIA Symposium; 1999. p. 671-5.
-
-
-
-
39
-
-
84867919822
-
Transformation-based error-driven learning and natural language processing: a case study in part-of-speech tagging
-
Brill E. Transformation-based error-driven learning and natural language processing: a case study in part-of-speech tagging. Comput Linguist 21 4 (1995) 543-565
-
(1995)
Comput Linguist
, vol.21
, Issue.4
, pp. 543-565
-
-
Brill, E.1
-
40
-
-
33750838890
-
-
Voutilainen A. NPtool: a detector of english noun phrases. In: Proceedings of the workshop on very large corpora. Columbus, OH; 1993.
-
-
-
-
41
-
-
0037433048
-
Identification of key concepts in biomedical literature using a modified Markov heuristic
-
Majoros1 W.H., Subramanian G.M., and Yandell M.D. Identification of key concepts in biomedical literature using a modified Markov heuristic. Bioinformatics 19 3 (2003) 402-407
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 402-407
-
-
Majoros, W.H.1
Subramanian, G.M.2
Yandell, M.D.3
-
42
-
-
18044384608
-
Improved identification of noun phrases in clinical radiology reports using a high-performance statistical natural language parser augmented with the UMLS specialist lexicon
-
Huang Y., Lowe H., Klein D., and Cucina R. Improved identification of noun phrases in clinical radiology reports using a high-performance statistical natural language parser augmented with the UMLS specialist lexicon. J Am Med Informat Assoc 12 3 (2005)
-
(2005)
J Am Med Informat Assoc
, vol.12
, Issue.3
-
-
Huang, Y.1
Lowe, H.2
Klein, D.3
Cucina, R.4
-
43
-
-
84900505594
-
-
Jones S, Staveley M. Phrasier: A system for interactive document retrieval using keyphrases. In: Proceedings of SIGIR'99, Berkeley, CA; 1999.
-
-
-
-
44
-
-
0002781584
-
Use of keyphrase extraction software for creation of an AEC/FM thesaurus
-
Kosovac B., Vanier D.J., and Froese T.M. Use of keyphrase extraction software for creation of an AEC/FM thesaurus. Electron J Inf Technol Constr 5 (2000) 25-36
-
(2000)
Electron J Inf Technol Constr
, vol.5
, pp. 25-36
-
-
Kosovac, B.1
Vanier, D.J.2
Froese, T.M.3
-
46
-
-
0036989572
-
-
Zha H. Generic summarization and keyphrase extraction using mutual reinforcement principle and sentence clustering. In: Proceedings of the 25th annual international ACM SIGIR conference on research and development in information retrieval, Tampere, Finland; 2002.
-
-
-
-
47
-
-
21844478478
-
Learning algorithm for keyphrase extraction
-
Turney P.D. Learning algorithm for keyphrase extraction. Inf Retrieval 2 4 (2000) 303-336
-
(2000)
Inf Retrieval
, vol.2
, Issue.4
, pp. 303-336
-
-
Turney, P.D.1
-
48
-
-
33750845179
-
-
Frank E, Paynter G, Witten IH, Gutwin C, Nevill-Manning, C. Domain-specific keyphrase extraction. In: Proceeding of the sixteenth international joint conference on artificial intelligence, San Mateo, CA; 1999.
-
-
-
-
49
-
-
5044241106
-
MedPost: a part-of-speech tagger for biomedical text
-
Smith L., Rindflesch T., and Wilbur W.J. MedPost: a part-of-speech tagger for biomedical text. Bioinformatics 20 14 (2004) 2320-2321
-
(2004)
Bioinformatics
, vol.20
, Issue.14
, pp. 2320-2321
-
-
Smith, L.1
Rindflesch, T.2
Wilbur, W.J.3
-
50
-
-
0036678776
-
Tagging gene and protein names in biomedical text
-
Tanabe L., and Wilbur W.J. Tagging gene and protein names in biomedical text. Bioinformatics 18 8 (2002) 1124-1132
-
(2002)
Bioinformatics
, vol.18
, Issue.8
, pp. 1124-1132
-
-
Tanabe, L.1
Wilbur, W.J.2
-
51
-
-
0033874603
-
Comparing noun phrasing techniques for use with medical digital library tools
-
Tolle K.M., and Chen H. Comparing noun phrasing techniques for use with medical digital library tools. J Am Soc for Inf Sci 51 4 (2000) 352-370
-
(2000)
J Am Soc for Inf Sci
, vol.51
, Issue.4
, pp. 352-370
-
-
Tolle, K.M.1
Chen, H.2
|