Evaluating parallel computing systems in bioinformatics

Proceedings - Third International Conference onInformation Technology: New Generations, ITNG 2006

Volumn 2006, Issue , 2006, Pages 233-238

  Gough, Erik S ^a   Kane, Michael D ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; GENE SEARCHING APPLICATIONS; GENE SEQUENCES; LIFE SCIENCES;

BIOMEDICAL ENGINEERING; COMPUTER ARCHITECTURE; DATA STRUCTURES; GENETIC ENGINEERING; INFORMATION TECHNOLOGY; PRODUCT DEVELOPMENT;

PARALLEL PROCESSING SYSTEMS;

EID: 33750804407     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ITNG.2006.62     Document Type: Conference Paper

References (7)

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3. Sæbø, P.E., Andersen, S.M., Myrseth, J., Laerdahl, J.K., and Rognes, T. PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. Nucleic Acids Research 2005 33:W535-W539 (2005).
4. Darling, A.E., Carey, L., Feng, W. The Design, Implementation, and Evaluation of mpiBLAST. (2003). www.cs.wisc.edu/~darling/mpiblast-cwce2003.pdf
5. Smith, T. F., Waterman, M. S. Identification of common molecular subsequences. J. Mol. Biol. 147:195-197(1981).
6. Needleman, S. B., Wunsch, C. D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:443-453 (1970).
7. Eddy, S.R. What is dynamic programming? Nature Biotechnology 22, 909 - 910 (2004).