Close genetic proximity between cultivated and wild Bactris gasipaes Kunth revealed by microsatellite markers in Western Ecuador

Genetic Resources and Crop Evolution

Volumn 53, Issue 7, 2006, Pages 1361-1373

  Couvreur, T L P ^a,e   Billotte, N ^b   Risterucci, A M ^b   Lara, C ^c   Vigouroux, Y ^a   Ludena B ^c   Pham, J L ^a   Pintaud, J C ^d  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b CIRAD   (France)

^c PONTIFICIA UNIVERSIDAD CATÓLICA DEL ECUADOR   (Ecuador)

^d Institut de Recherche pour le Developpement Ecuador   (Ecuador)

^e WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Bactris gasipaes; Crop wild relatives (CWR); Field inquiries; Fruit volumes; Gene flow; Genetic diversity; Peach palm

Indexed keywords

ALLOPATRY; EXPERIMENTAL STUDY; FRUIT; GENETIC DIFFERENTIATION; GENETIC MARKER; NEOTROPICAL REGION; POLYMORPHISM; RELATEDNESS; SYMPATRY; WILD POPULATION;

AMAZONIA; CENTRAL AMERICA; ECUADOR; SOUTH AMERICA;

BACTRIS GASIPAES; PRUNUS PERSICA;

EID: 33750581526     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-005-5033-z     Document Type: Article

References (45)

1. Adin A., Weber J.C., Sotelo Montes C., Vidaurre H., Vosman B. and Smulders M.J.M. 2004. Genetic differentiation and trade among populations of peach palm (Bactris gasipaes Kunth) in the Peruvian Amazon: implications for genetic resource management. Theor. Appl. Genet. 108: 1564-1573.
2. Belkhir K., Goudet J., Chikhi L. and Bonhomme F. 2000. Genetix (Ver. 4.01), logiciel sous windowsTM pour la génétique des populations. Montpellier, France.
3. Billotte N., Couvreur T., Marseillac N., Brottier P., Perthuis B., Vallejo M., Noyer J.-L., Jacquemoud-Collet J.-P., Risterucci A.-M. and Pintaud J.-C. 2004. A new set of microsatellite markers for the peach palm (Bactris gasipaes Kunth): characterization and across-taxa utility within the tribe Cocoeae. Mol. Ecol. Notes 4: 580-582.
4. Borchsenius F., Pedersen H.B. and Balslev H. 1998. Manual to the Palms of Ecuador. AAU Reports 37, Aarhus, Denmark.
5. Boutin-Ganache I., Raposo M., Raymond M. and Deschepper C.F. 2001. M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele sizing methods. Biotechniques 31: 24-28.
6. Chakraborty R. and Jin L. 1993. A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances. In: Chakraborty R., et al. (eds), DNA Fingerprinting: State of the Science. Birkhäuser Verlag, Basel, Switzerland, pp. 153-175.
7. Clement C.R. 1988. Domestication of the Pejibaye palm (Bactris gasipaes): past and present. Adv. Econ. Bot. 6: 155-174.
8. Clement C.R. 1995. Growth and Genetic Analysis of Pejibaye (Bactris gasipaes Kunth, Palmae) in Hawaii. Universty of Hawaii at Manoa, Honolulu, USA.
9. Clement C.R. and Mora Urpi J. 1987. Pejibaye palm (Bactris gasipaes, Arecaceae): multi-use potential for the lowland humid tropics. Econ. Bot. 41: 302-311.
10. Clement C.R. and Mora Urpi J. 1988. Phenotypic Variation of Peach Palm Observed in the Amazon. Final report on peach palm (Bactris gasipaes H.B.K.): gene bank, AID/CENARGEN, Manaus, Brazil, pp. 78-94.
11. Clement C.R. and Manshardt R.M. 2000. A review of the importance of spines for pejibaye heart-of-palm production. Sci. Hort. 83: 11-23.
12. Clement C.R., Aradhya M.K. and Manshardt R.M. 1997. Allozyme variation in spineless pejibaye (Bactris gasipaes Palmae). Econ. Bot. 51: 149-157.
13. Clement C.R., Aguiar J.P.L. and Aued P.S. 1999. Wild pejibaye (Bactris dahlgreniana, Glassman, Palmae) in Amazonas, Brazil. Acta Bot. Venez. 22: 29-44.
14. Clement C.R., Sousa N.R., Rodrigues D.P., Astolfi-Filho S., Moreno Y.N., Pascual V.T. and Rodriguez F.J.G. 2002. Use of AFLPs to distinguish landraces of Pejibaye (Bactris gasipaes) in Brazilian Amazonia. Sci. Agric. 59: 749-753.
15. Cornuet J.M., Piry S., Luikart G., Estoup A. and Solignac M. 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153: 1989-2000.
16. Corrales U. and Mora Urpi J. 1990. Sobre el protopejibaye. 2nd ed. Universidad de Costa Rica, San José, Costa Rica.
17. Degren B., Streiff R. and Ziegenhagen B. 1999. Comparative study of genetic variation and differentiation of two pedunculate oak (Quercus robur) stands using microsatellite and allozyme loci. Heredity 83: 597-603.
18. Dieringer D. and Schlötterer C. 2003. Microsatellite analyzer (MSA): a platform independent analysis tool for large microsatellite data sets. Mol. Ecol. Notes 2: 1-3.
19. Eguiarte L., Pérez-Nasser N. and Piñero D. 1992. Genetic structure, outcrossing rate and heterosis in Astrocaryum mexicanum (tropical palm): implications for evolution and conservation. Heredity 69: 217-228.
20. Ellstrand N.C., Prentice H. and Hancock J. 1999. Gene flow and introgression from domesticated plants into their wild relatives. Annu. Rev. Ecol. Syst. 30: 539-563.
21. Felsenstein J. 1995. Phylip (Phylogenic Inference Package). University of Washington, Seattle WA, USA.
22. Ferreira E. 1999. The Phylogeny of Punupuha (Bactris gasipaes Kunth, Palmae) and allied species. Memoirs New York Bot. Garden 83: 225-236.
23. Gaiotto F., Grattapaglia D. and Vencovsky R. 2003. Genetic structure, mating system, and long-distance gene flow in heart of palm (Euterpe edulis Mart.). J. Hered. 94: 399-406.
24. Glaubitz J.C. 2004. CONVERT: A user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Mol. Ecol. Notes 4: 309-310.
25. Goldstein D.B. and Pollock D.D. 1997. Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. J. Hered. 88: 335-342.
26. Goudet J. 1995. Fstat version 1.2. A computer program to calculate F-statistics. J. Hered. 86: 485-486.
27. Hamrick J.L. and Godt M. 1989. Allozyme diversity in plants species. In: Clegg M. (eds), et al. Plant Population Genetics, Breeding and Genetic Resources. Sinauer, Sunderland, MA, USA, pp. 42-63.
28. Henderson A. 2000. Flora neotropica Monograph 79: Bactris (PALMAE). The New York Botanical Garden, Bronx, New York, USA.
29. Hernández Bermejo J. and León J. 1994. Neglected crops: 1492 from a different perspective. FAO Plant Prod. Protect. 26: 341.
30. Metzler A.B., Campos M.M., Piedra M.F., Mora U.J., Blanco M.A., Montero C.M. and Fernandez P.M. 1992. Pejibaye palm fruit contribution to human nutrition. Principes 36: 66-69.
31. Michalakis Y. and Excoffier L. 1996. A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics. 142: 1061-1064.
32. Mora Urpi J., Weber J.C. and Clement C.R. 1997. Peach palm: Bactris gasipaes Kunth. Promoting the Conservation Use of Underutilized and Neglected Crops. 20 Institute of Plant Genetics and Crop Plant Research/International Plant Genetic Resources Institute, Gatersleben/Rome, Italy.
33. Nei M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York, USA.
34. Patiño V.M. 1958. El Cachipay o Pejibay. Inst. Indig. Interam. 39: 172-332.
35. Patiño V.M. 1992. An ethnobotanical sketch of the palm Bactris (Guilielma) gasipaes. Principes 36: 143-147.
36. Popenoe W. and Jimenez O. 1921. The Pejibaye: a neglected food-plant of tropical America. J. Hered. 12: 154-166.
37. Pritchard J.K., Stephens M. and Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
38. Raymond M. and Rousset F. 1995. GENEPOP (ver1.2): a population genetics software for exact test and ecumenicism. J. Hered. 86: 248-249.
39. Rice R.W. 1989. Analyzing tables of statistical tests. Evolution 43: 223-225.
40. Saitou N. and Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
41. Salzman V.T. and Judd W.S. 1995. A revision of the Greater Antillean species of Bactris (Bactrideae: Arecaceae). Brittonia 47: 345-371.
42. Schlötterer C. and Pemberton J. 1998. The use of microsatellites for genetic analysis of natural populations: a critical review. In: DeSalle R. and Schierwater B. (eds), Molecular Approaches to Ecology and Evolution. Birkhäuser, Basel, Switzerland, pp. 71-86.
43. Schneider S., Roessli D. and Excoffier L. 2000. Arlequin, Version 2.0: A Software for Population Genetic Data Analysis. Genetics and Biometry Laboratory, Geneva, Switzerland.
44. StatSoft 2001. STATISTICA (Data Analysis Software System). Release 6.0. Tulsa, OK, USA
45. White M., Boshier H. and Powell W. 1999. Genetic variation within a fragmented population of Swietenia humilis Zucc. Mol. Ecol. 8: 1899-1909.