PubFocus: Semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm

BMC Bioinformatics

Volumn 7, Issue , 2006, Pages

  Plikus, Maksim V ^a   Zhang, Zina ^b   Chuong, Cheng Ming ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIBLIOMETRIC INDICATORS; BIOMEDICAL CITATIONS; BIOMEDICAL VOCABULARIES; CITATION ANALYSIS; NATIONAL CANCER INSTITUTE; NOVICES AND EXPERTS; RANKING ALGORITHM; RESEARCH ACTIVITIES;

ALGORITHMS; MAMMALS; SEMANTICS;

QUALITY CONTROL;

ALGORITHM; ARTICLE; AUTOMATION; BIBLIOMETRICS; BIOINFORMATICS; BIOMEDICINE; CITATION ANALYSIS; DATA ANALYSIS SOFTWARE; INFORMATION PROCESSING; MEDLINE; NOMENCLATURE; PUBLICATION; SCIENTIFIC LITERATURE; STATISTICS; BOOK; COMPARATIVE STUDY; COMPUTER PROGRAM; SEMANTICS; TRENDS; UTILIZATION;

MAMMALIA;

ALGORITHMS; DICTIONARIES, MEDICAL; MEDLINE; PUBMED; SEMANTICS; SOFTWARE DESIGN;

EID: 33750579629     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-424     Document Type: Article

References (32)

1. PubMed [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed]
2. Muin M, Fontelo P, Liu F, Ackerman M: SLIM: an alternative Web interface for MEDLINE/PubMed searches - a preliminary study. BMC Med Inform Decis Mak 2005, 5:37.
3. Ding J, Berleant D: MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations. Bioinformatics 2005, 21:694-5.
4. Ding J, Hughes LM, Berleant D, Fulmer AW, Wurtele ES: PubMed Assistant: a biologist-friendly interface for enhanced PubMed search. Bioinformatics 2006, 22:378-80.
5. Perez-Iratxeta C, Bork P, Andrade MA: XplorMed: a tool for exploring MEDLINE abstracts. Trends Biochem Sci 2001, 26:573-5.
6. Perez-Iratxeta C, Perez AJ, Bork P, Andrade MA: Update on XplorMed: A web server for exploring scientific literature. Nucleic Acids Res 2003, 31:3866-8.
7. Goetz T, von der Lieth CW: PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts. Nucleic Acids Res 2005, 33:W774-8.
8. Vivisimo [http://www.vivisimo.com]
9. Doms A, Schroeder M: GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Res 2005, 33:W783-6.
10. Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004, 32:D258-61.
11. BioMed Central Databases [http://databases.biomedcentral.com]
12. Web of Science, The Thomson Corporation [http://portal.isiknowledge.com/ portal.cgi?DestApp=WOS&Func=Frame]
13. Garfield E: The history and meaning of the journal impact factor. JAMA 2006, 295:90-3.
14. Dong P, Loh M, Mondry A. The "impact factor" revisited. Biomed Digit Libr 2005, 2:7.
15. Kurmis AP, Kurmis TP: Exploring the relationship between impact factor and manuscript rejection rates in radiologic journals. Acad Radiol 2006, 13:77-83.
16. Hoeffel C: Journal impact factors. Allergy 1998, 53:1225.
17. Devos P, Dufresne E, Renard JM, Beuscart R: SIGAPS: a prototype of bibliographic tool for medical research evaluation. Stud Health Technol Inform 2003, 95:721-6.
18. Oliver DE, Bhalotia G, Schwartz AS, Altman RB, Hearst MA: Tools for loading MEDLINE into a local relational database. BMC Bioinformatics 2004, 7:5-146.
19. Bakkalbasi N, Bauer K, Glover J, Wang L: Three options for citation tracking: Google Scholar, Scopus and Web of Science. Biomed Digit Libr 2006:3-7.
20. Sioutos N, Coronado SD, Haber MW, Hartel FW, Shaiu WL, Wright LW: NCl thesaurus: A semantic model integrating cancer-related clinical and molecular information. J Biomed Inform 2006.
21. de Coronado S, Haber MW, Sioutos N, Tuttle MS, Wright LW: NCl Thesaurus: using science-based terminology to integrate cancer research results. Medinfo 2004, 11:33-7.
22. Eppig JT, Bult CJ, Kadin JA, Richardson JE, Blake JA, Anagnostopoulos A, Baldarelli RM, Baya M, Beal JS, Bello SM, Boddy WJ, Bradt DW, Burkart DL, Butler NE, Campbell J, Cassell MA, Corbani LE, Cousins SL, Dahmen DJ, Dene H, Diehl AD, Drabkin HJ, Frazer KS, Frost P, Glass LH, Goldsmith CW, Grant PL, Lennon-Pierce M, Lewis J, Lu I: The Mouse Genome Database (MGD): from genes to mice - a community resource for mouse biology. Nucleic Acids Res 2005, 33(Database issue):D471-5.
23. Shapiro DW, Wenger NS, Shapiro MF: The contributions of authors to multiauthored biomedical research papers. JAMA 1994, 271:438-42.
24. Grando AS, Bernhardrnals JD: "First Author, Second Author, et Int, and Last Author": A Proposed Citation System for Biomedical Papers. Science Editor 2003, 26:122-124.
25. Google™ Scholar [http://scholar.google.com/scholar/about.html]
26. Scirus™ [http://www.scirus.com/srsapp/about.html]
27. Yoshida K, Miki Y: Role of BRCA1 and BRCA2 as regulators of DNA repair, transcription, and cell cycle in response to DNA damage. Cancer Sci 2004, 95:866-71.
28. Cotsarelis G, Sun TT, Lavker RM: Label-retaining cells reside in the bulge area of pilosebaceous unit: Implications for follicular stem cells, hair cycle, and skin carcinogenesis. Cell 1990, 61:1329-37.
29. Bales ME, Johnson SB: Graph theoretic modeling of large-scale semantic networks. J Biomed Inform 2006, 39(4):451-64.
30. Ashburner M, Drysdale R: FlyBase - the Drosophila genetic database. Development 1994, 120(7):2077-9.
31. Biomed Central, Faculty of 1000 (F1000) Biology [http:www.f1000biolgy.com/about]
32. Biomed Central, Faculty of 1000 (F1000) Medicine [http://www.f1000medicine.com/about]