Phylogenetic relationships of Deschampsia antarctica (Poaceae): Insights from nuclear ribosomal ITS

Plant Systematics and Evolution

Volumn 261, Issue 1-4, 2006, Pages 1-9

  Souto, D P Fernández ^a   Catalano, S A ^b,c   Tosto, D ^a   Bernasconi, P ^a   Sala, A ^a   Wagner, M ^a   Corach, D ^a  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b Inst Fitotecnico de S Catalina   (Argentina)

^c Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

Author keywords

5.8S; Aveneae; Deschampsia antarctica; ITS; Phylogenetics; Poaceae; Sequence

Indexed keywords

AVENEAE; DESCHAMPSIA; DESCHAMPSIA ANTARCTICA; DESCHAMPSIA FLEXUOSA; POACEAE;

EID: 33750564302     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-006-0425-x     Document Type: Article

References (28)

1. A. K. Aïnouche R. J. Bayer 1999 Phylogenetic relationships in Lupinus(Fabaceae: Papilionoideae) based on internal transcribed spacer sequences (ITS) of nuclear ribosomal DNA Amer. J. Bot. 86 4 590 607
2. B. G. Baldwin M. J. Sanderson J. M. Porter M. F. Wojciechowski C. S. Campbell M. J. Donoghue 1995 The ITS region of nuclear ribosomal DNA: a valuable source of evidence on Angiosperm phylogeny Ann. Missouri Bot. Gard. 82 247 277
3. K. Bremer 1988 The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction Evolution 42 795 803
4. P. Catalan E. A. Kellogg R. G. Olmstead 1997 Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences Molec. Phylogenet. Evol. 8 150 166
5. W. D. Clayton S. A. Renvoize 1986 Genera Graminium Her Majesty's Stationery Office London
6. M. Gidekel L. Destefano-Beltran P. Garcia L. Mujica P. Leal M. Cuba L. Fuentes L. A. Bravo L. J. Corcuera M. Alberdi I. Concha A. Gutierrez 2003 Identification and characterization of three novel cold acclimation-responsive genes from the extremophile hair grass Deschampsia antarctica Desv Extremophiles 7 6 459 69
7. G. Giribet 2003 Stability in phylogenetic formulations and its relationship to nodal support Syst. Biol. 52 4 554 64
8. Glick B. R., Thompson J. E. (1993) Methods in plant molecular biology and biotechnology. CRC Press, pp. 38-39.
9. P. A. Goloboff J. S. Farris M. Källersjö B. Oxelman M. J. Ramírez C. A. Szumik 2003 Improvements to resampling measures of group support Cladistics 19 4 324 332
10. Grass Phylogeny Working Group (2001) Phylogeny and subfamilial classification of the grasses (Poaceae). Ann. Missouri Bot. Gard. 88 (3): 373- 457.
11. M. A. Hershkovitz E. A. Zimmer 1996 Conservation patterns in Angiosperm rDNA ITS2 sequences Nucleic Acids Res. 24 15 2857 2867
12. C. Hsiao N. J. Chatterton K. H. Asay K. B. Jensen 1995 Molecular phylogeny of the Pooideae (Poaceae) based on the nuclear rDNA (ITS) sequences Theor. Appl. Genet. 90 389 398
13. C. Hsiao N. J. Chatterton K. H. Asay K. B. Jensen 1994 Phylogenetic relationships of 10 grass species: an assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in Monocots Genome 37 112 120
14. C. Hsiao S. W. L. Jacobs N. J. Chatterton K. H. Asay 1999 A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS) Austral. Syst. Bot. 11 667 688
15. D. V. Jobes L. B. Thien 1997 A conserved motif in the 5.8S ribosomal RNA (rRNA) gene is a useful diagnostic marker for plant internal transcribed spacer (ITS) sequences Pl. Molec. Biol. Rep. 15 326 334
16. S. Nadot R. Bajon B. Lejeune 1994 The chloroplast gene rps4 as a tool for the study of Poaceae phylogeny Pl. Syst. Evol. 191 27 38
17. Nicora E. G. (1978) Flora patagónica (Gramineae), Vol. III. Colección Científica del InstitutoNacional de Tecnología Agropecuaria, Buenos Aires, p. 233.
18. Nishikawaa T., Okazaki K., Uchino T., Arakawa K., Nagamine T. (1999) A molecular phylogeny of Lilium in the internal transcribed spacer region of nuclear ribosomal DNA. J. Molec. Evol. 49: 238.
19. ProFlora (1996) Flora Fanerogámica Argentina, Fascículo 22. Pro Flora CONICET, Buenos Aires, p. 2.
20. Soreng R. J. (1997) TROPICOS - Catalogue of New World Grasses. http://mobot.mobot.org/cgi-bin/search_vast.
21. Soreng R.J., Davis J. I. (2000) Phylogenetic structure in Poaceae subfamily Pooideae as inferred from molecular and morphological characters; misclassification versus reticulation. In: Jacobs S. W. L., Evertt J. (eds.) Grasses: Systematics and evolution. CSIRO Publishing, pp. 61-64.
22. N. N. Tzvelev 1989 The system of grasses (Poaceae) and their evolution The Bot. Rev. 55 141 204
23. J. Van de Staaij N. V. de Bakker A. Oosthoek R. Broekman A. van Beem M. Stroetenga R. Aerts J. J. Rozema 2002 Flavonoid concentrations in three grass species and a sedge grown in the field and under controlled environment conditions in response to enhanced UV-B radiation J. Photochem. Photobiol. B. 66 1 21 9
24. L. Watson M. J. Dallwitz 1992 The grass genera of the world C.A.B. International Wallingford UK
25. W. C. Wheeler 1996 Optimization alignment: the end of multiple sequence alignment in phylogenetics? Cladistics 12, 1 1 9
26. Wheeler W. C., Gladstein D. S., Delaet J. (2002) POY: the optimization of alignment characters, version 3.0. Program and documentation available at ftp.amnh.org/pub/molecular. American Museum of Natural History, New York.
27. W. C. Wheeler C. Y. Hayashi 1998 The phylogeny of the extant Chelicerate orders Cladistics 14 2 173 192
28. White T. J., Bruns T., Lee S., Taylor J. W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. (eds.) PCR protocols; a guide to methods and applications. Academic Press, San Diego, California, pp. 315-322.