Optimal spectral coordination of subantennae in natural antennae as an efficient strategy for light harvesting in photosynthesis

Journal of Bioinformatics and Computational Biology

Volumn 4, Issue 4, 2006, Pages 887-909

  Novikov, A A ^a   Taisova, A S ^a   Fetisova, Z G ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Green bacteria; Light harvesting antenna; Model calculations; Photosynthesis

Indexed keywords

BACTERIOCHLOROPHYLL;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL MEMBRANE; BACTERIAL METABOLISM; CHROMOSOME ISOLATION; CONTROLLED STUDY; ENERGY TRANSFER; FAMILIA; LIGHT HARVESTING SYSTEM; MICROBIAL MORPHOLOGY; NONHUMAN; OSCILLOCHLORIDACEAE; OSCILLOCHLORIS TRICHOIDES; PHOTOSYNTHESIS; PHOTOTROPHIC BACTERIUM; PROCESS OPTIMIZATION; SPECTROSCOPY; THEORETICAL STUDY;

ALGAE, GREEN; CHLOROFLEXI; COMPUTER SIMULATION; ENERGY TRANSFER; LIGHT; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, BIOLOGICAL; PHOTOSYNTHESIS; PROTEIN STRUCTURE, TERTIARY;

BACTERIA (MICROORGANISMS); OSCILLOCHLORIDACEAE; OSCILLOCHLORIS TRICHOIDES;

EID: 33750485328     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S021972000600220X     Document Type: Article

References (53)

1. Fetisova ZG, Fok MV, Optimization routes for the transformation of light energy in primary acts of photosynthesis. I. The necessity of structure optimization for photosynthetic unit and method for the calculation of its efficiency, Mol Biol (Engl transl) 18:1651-1656, 1984.
2. Fok MV, Fetisova ZG, Limitations on the quantum yield of photosynthesis imposed by energy transfer rates, Photobiochem Photobiophys 6:127-133, 1983.
3. Fetisova ZG et al., Optimization routes for the transformation of light energy in primary acts of photosynthesis. II. Optimization of lattice structure of uniform photosynthetic unit, Mol Biol (Engl transl) 18:1657-1663, 1984.
4. Fetisova ZG, Fok MV, Shibaeva LV, Optimization routes for the transformation of light energy in primary acts of photosynthesis. III. The role of spectral heterogeneity of light-harvesting antenna, Mol Biol (Engl transl) 19:974-982, 1985.
5. Fetisova ZG, Fok MV, Shibaeva LV, Optimization routes for the transformation of light energy in primary acts of photosynthesis. IV. The role of mutual orientation of dipole moment vectors of transitions for photosynthetic unit molecules, Mol Biol (Engl transl) 19:983-991, 1985.
6. Fetisova ZG, Fok MV, Shibaeva LV, Optimization routes for the transformation of light energy in primary acts of photosynthesis. V. Molecular "focusing zone" of reaction center and optimization of its parameters, Mol Biol (Engl transl) 19:1476-1488, 1985.
7. Fetisova ZG, Borisov AY, Fok MV, Analysis of structure - function correlations in light-harvesting photosynthetic antenna: Structure optimization parameters, J Theor Biol 112:41-75, 1985.
8. Fetisova ZG, Shibaeva LV, Fok MV, Biological expedience of oligomerization of chlorophyllous pigments in natural photosynthetic systems, J Theor Biol 140:167-184, 1989.
9. Fetisova ZG, Shibaeva LV, Principles for designing optimal artificial light-harvesting molecular systems, in Terol S (ed.), Proc. 1986 Int Congress Renewable Energy Sources, Consejo Superior de Investigaciones Cientificas, Madrid, Spain, 1, pp. 80-89, 1987.
10. Fetisova ZG, Excitation energy transfer in photosynthetic systems, in Drews G, Dawe EA (eds.), Molecular Biology of Membrane-Bound Complexes in Phototrophic Bacteria, Plenum Press, NY/London, pp. 357-364, 1990.
11. Fetisova ZG, Shibaeva LV, Taisova AS, Oligomerization of light-harvesting pigments as a structural factor optimizing the photosynthetic antenna function. 1. Model calculations, Mol Biol (Engl transl) 29:1384-1390, 1995.
12. Fetisova ZG, Survival strategy of photosynthetic organisms. 1. Variability of the extent of light-harvesting pigment aggregation as a structural factor optimizing the function of oligomeric photosynthetic antenna. Model calculations, Mol Biol (Engl transl) 38:434-440, 2004.
13. Fetisova ZG, Freiberg AM, Timpmann KE, Long-range molecular order as an efficient strategy for light harvesting in photosynthesis, Nature 334:633-634, 1988.
14. Fetisova ZG, Mauring K, Experimental evidence of oligomeric organization of antenna bacteriochlorophyll c in green bacterium Chloroflexus aurantiacus by spectral hole burning, FEBS Letters 307:371-374, 1992.
15. Fetisova ZG, Mauring K, Spectral hole burning study of intact cells of the green bacterium Chlorobium limicola, FEBS Letters 323:159-162, 1993.
16. Timpmann KE et al., Functioning of oligomeric-type light-harvesting antenna, Biochem Mol Biol Int 42:21-27, 1997.
17. Mauring K et al., Oligomerization of light-harvesting pigments as a structural factor optimizing the photosynthetic antenna function. 2. Experimental proof of oligomeric organization of pigments in superantenna of green bacteria, Mol Biol (Engl transl) 30:442-448, 1996.
18. Fetisova ZG et al., Excitation energy transfer in chlorosomes of green bacteria: Theoretical and experimental studies, Biophys J 71:995-1010, 1996.
19. Yakovlev AG, Taisova AS, Fetisova ZG, Light control over the size of an antenna unit building block as an efficient strategy for light harvesting in photosynthesis, FEBS Letters 512:129-132, 2002.
20. Yakovlev AG, Taisova AS, Fetisova ZG, Survival strategy of photosynthetic organisms. 2. Experimental proof of the size variability of the unit building block of lightharvesting oligomeric antenna, Mol Biol (Engl transl) 38:441-446, 2004.
21. Borisov Ayu, Fetisova ZG, Studies of resonance energy migration in a heterogeneous pigment complex. I. Heterogeneity as a factor accelerating the localization of electron excitation in traps, Mol Biol (Engl transl) 5:405-411, 1972.
22. Seely GR, Energy transfer and spectral heterogeneity of a light-harvesting antenna in higher plants, J Theor Biol 40:173, 1973.
23. Taisova AS et al., Study of the chlorosomal antenna of the green mesophilic filamentous bacterium Oscillochloris trichoides, Photosynth Res 74:73-85, 2002.
24. Trüper HG, Pfennig N, The family chlorobiaceae, in Balows A, Trüper HG, Dworkin M, Schliefer KH, Harder W (eds.), The Prokaryotes, Springer, Berlin, pp. 3583-3592.
25. Keppen OI et al., Proposal of Oscillochloridaceae fam. nov. On the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oscillochloris trichoides in comparison with further new isolates, Int J Systemat Evolution Microbiol 50:1529-1537, 2000.
26. Oelze J, Golecki JR, Membranes and chlorosomes of green bacteria: structure, composition and development, in Blankenship RE, Madigan MT, Bauer CE (eds.), Anoxygenic Photosynthetic Bacteria, Kluwer Academic Publishers, Dordrecht, pp. 259-278, 1995.
27. Montano GA et al., Characterization of Chlorobium tepidum chlorosomes: A calculation of bacteriochlorophyll c per chlorosome and oligomer modeling, Biophys J 85:2560-2565, 2003.
28. Novoderezhkin VI, Taisova AS, Fetisova ZG, Unit building block of the oligomeric chlorosomal antenna of the green photosynthetic bacterium Chloroflexus aurantiacus: Modeling of nonlinear optical spectra, Chem Phys Lett 335:234-240, 2001.
29. Hohmann-Marriott MF, Blankenship RE, Roberson RW, The ultrastructure of Chlorobium tepidum chlorosomes revealed by electron microscopy, Photosynth Res 86:145-154, 2005.
30. Psencik J et al., Lamellar organization of pigments in chlorosomes, the light harvesting complexes of green photosynthetic bacteria, Biophys J 87:1165-1172, 2004.
31. Staehelin LA et al., Visualization of the supramolecular architecture of chlorosomes (chlorobium type vesicles) in freeze-fructured cells of Chloroflexus aurantiacus, Arch Microbiol 119:269-277, 1978.
32. Staehelin LA, Golecki JR, Drews G, Supramolecular architecture of chlorosomes (Chlorobium vesicles) and of their membrane attachment sites in Chlorobium limicola, Biochim Biophys Acta 589:30-45, 1980.
33. Blankenship RE, Olson JM, Miller M, Antenna complexes from green photosynthetic bacteria, in Blankenship RE, Madigan MT, Bauer CE (eds.) Anoxygenic Photosynthetic Bacteria, Kluwer Academic Publishers, Dordrecht, pp. 399-435, 1995.
34. Montano GA et al., Isolation and characterization of the B798 light-harvesting base-plate from the chlorosomes of Chloroflexus aurantiacus, Biochem 42:10246-10251, 2003.
35. Gerola PD, Olson JM, A new bacteriochlorophyll a-protein complex associated with chlorosomes of green sulfur bacteria, Biochim Biophys Acta 848:69-76, 1986.
36. Yakovlev AG et al., Exciton dynamics in the chlorosomal antenna of the green bacterium Chloroflexus aurantiacus: Experimental and theoretical studies of femtosecond pump-probe spectra, Photosynth Res 71:19-32, 2002.
37. Valentin MD et al., Structural investigation of oxidized chlorosomes from green bacteria using multifrequency electron paramagnetic resonance up to 330GHz, Photosynth Res 71:33-44, 2002.
38. Clayton RE, in Hutchinson P, Fuller W, Mullins LJ (eds.), Photosynthesis, Cambridge University Press, Cambridge, New York, Melbourne, 1980.
39. Sauer K, in Staehelin LA, Arntzen CJ (eds.), Encyclopedia of Plant Physiology Springer, Berlin, 1986.
40. Knox RS, in Barber J (ed.), Topics in Photosynthesis, Amsterdam, 1977.
41. Mimuro M et al., Excitation energy flow in chlorosome antennas of green photosynthetic bacteria, J Phys Chem 93:7503-7509, 1989.
42. Golecki JR, Oelze J, Quantitative relationship between bacteriochlorophyll content, cytoplasmic membrane structure and chlorosome size in Chloroflexus aurantiacus, Arch Microbiol 148:236-241, 1987.
43. Novoderezhkin VI, Monshouwer R, van Grondelle R, Exciton (de)localization in the LH2 antenna of Rhodobacter sphaeroides as revealed by relative difference absorption measurements of the LH2 antenna and the B820 subunit, J Phys Chem B 103:10540-10548, 1999.
44. van Grondelle R, Novoderezhkin VI, Dynamics of excitation energy transfer in the LH1 and LH2 light-harvesting complexes of photosynthetic bacteria, Biochem 40:15058-15068, 2001.
45. Zhang WM et al., Exciton-migration and three-pulse femtosecond optical spectroscopies of photosynthetic antenna complexes, J Chem Phys 108:7763-7774, 1998.
46. Yang M, Fleming GR, Influence of phonons on exciton transfer dynamics: comparison of the Redfield, Förster, and modified Redfield equations, Chem Phys 275:355-372, 2002.
47. Pullerits T, Sundström V, Photosynthetic light-harvesting pigment-protein complexes: Toward understanding how and why, Acc Chem Res 29:381-390, 1996.
48. Novoderezhkin VI, Razjivin AP, The theory of Förster-type migration between clusters of strongly interacting molecules: Application to light-harvesting complexes of purple bacteria, Chem Phys 211:203-214, 1996.
49. Linnanto J, Korppi-Tommola JEI, Theoretical study of excitation transfer from modified B800 rings of the LH II antenna complex of Rps. Acidophila, Phys Chem Chem Phys 4:3453-3460, 2002.
50. Förster T, Modern quantum chemistry, in Sinannoǧlu O (ed.), Istanbul Lectures. Part III: Action of Light and Organic Crystals, Academic Press, New York, pp. 93-137, 1965.
51. Fenna RE, Matthews BW, Chlorophyll arrangement in a bacteriochlorophyll protein from Chlorobium limicola, Nature 258:573-577, 1975.
52. Li Y-F et al., Crystal structure of the bacteriochlorophyll a protein from Chlorobium tepidum, J Mol Biol 271:456-471, 1997.
53. Frigaard NU, Bryant D, Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria, Arch Microbiol 182:265-276, 2004.