Side-chain and backbone ordering in a polypeptide

Journal of Chemical Physics

Volumn 125, Issue 16, 2006, Pages

  Wei, Yanjie ^a   Nadler, Walter ^a   Hansmann, Ulrich H E ^a,b  

^a MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

^b FORSCHUNGSZENTRUM JÜLICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; GASES; LOW TEMPERATURE EFFECTS; PHASE TRANSITIONS; SOLVENTS; TOPOLOGY;

BACKBONE ORDERING; MULTICANONICAL SIMULATIONS; POLYGLUTAMIC ACID; SIDE CHAIN;

POLYPEPTIDES;

PEPTIDE;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; HYDROGEN BOND; PROTEIN TERTIARY STRUCTURE; TEMPERATURE;

COMPUTER SIMULATION; HYDROGEN BONDING; MODELS, MOLECULAR; PEPTIDES; PROTEIN STRUCTURE, TERTIARY; TEMPERATURE;

EID: 33750433189     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2364890     Document Type: Article

References (23)

1. V. Aleksenko, W. Kwak, and U. H. E. Hansmann, Physica A 350, 28 (2005).
2. C. J. Geyer and A. Thompson, J. Am. Stat. Assoc. 90, 909 (1995).
3. K. Hukushima and K. Nemoto, J. Phys. Soc. Jpn. 65, 1604 (1996).
4. U. H. E. Hansmann, Chem. Phys. Lett. 281, 140 (1997).
5. B. A. Berg and T. Neuhaus, Phys. Lett. B 267, 249 (1991).
6. B. A. Berg and T. Celik, Phys. Rev. Lett. 69, 2292 (1992).
7. U. H. E. Hansmann and Y. Okamoto, in Annual Reviews in Computational Physics VI, edited by, D. Stauffer, (World Scientific, Singapore, 1999), pp. 129-157.
8. W. Kwak and U. H. E. Hansmann, Phys. Rev. Lett. 95, 138102 (2005).
9. U. H. E. Hansmann and Y. Okamoto, J. Comput. Chem. 14, 1333 (1993).
10. M. J. Sippl, G. Ńmethy, and H. A. Scheraga, J. Phys. Chem. 88, 6231 (1984), and references therein.
11. F. Eisenmenger, U. H. E. Hansmann, Sh. Hayryan, and C.-K. Hu, Comput. Phys. Commun. 138, 192 (2001).
12. F. Eisenmenger, U. H. E. Hansmann, Sh. Hayryan, and C.-K. Hu, Comput. Phys. Commun. 174, 422 (2006).
13. T. Ooi, M. Obatake, G. Nemethy, and H. A. Scheraga, Proc. Natl. Acad. Sci. U.S.A. 8, 3086 (1987).
14. U. H. E. Hansmann, J. Chem. Phys. 120, 417 (2004).
15. S. Trebst, M. Troyer, and U. H. E. Hansmann, J. Chem. Phys. 124, 174903 (2006).
16. A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 0031-9007 10.1103/PhysRevLett.61.2635 61, 2635 (1988); A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 63, 1658(E) (1989), and references given in the erratum.
17. A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 0031-9007 10.1103/PhysRevLett.61.2635 61, 2635 (1988); A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 63, 1658(E) (1989), and references given in the erratum.
18. Y. Okamoto and U. H. E. Hansmann, J. Phys. Chem. 99, 11276 (1995).
19. M. R. Hartings, B. S. Kinnear, and M. F. Jarrold, J. Am. Chem. Soc. 125, 3941 (2003).
20. M. Kohtani, T. C. Jones, J. E. Schneider, and M. F. Jarrold, J. Am. Chem. Soc. 126, 7420 (2004).
21. J. F. Yan, G. Vanderkooi, and H. A. Scheraga, J. Chem. Phys. 49, 2713 (1968).
22. U. H. E. Hansmann and Y. Okamoto, J. Chem. Phys. 110, 1267 (1999).
23. Y. Peng, U. H. E. Hansmann, and N. A. Alves, J. Chem. Phys. 118, 2374 (2003).