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Volumn 4175 LNBI, Issue , 2006, Pages 197-206

Accelerating motif discovery: Motif matching on parallel hardware

Author keywords

[No Author keywords available]

Indexed keywords

ABSTRACTING; ALGORITHMS; COMPUTATIONAL METHODS; COMPUTER HARDWARE; PARALLEL PROCESSING SYSTEMS; SUPERCOMPUTERS;

EID: 33750387399     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11851561_19     Document Type: Conference Paper
Times cited : (10)

References (11)
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    • Bailey, T.L., Elkan, C.: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Conf. Intell. Syst. Mol. Biol. ISMB'94 (1994) 28-36
    • (1994) Proc. Conf. Intell. Syst. Mol. Biol. ISMB'94 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 2
    • 0029962489 scopus 로고    scopus 로고
    • ParaMEME: A parallel implementation and a web interface for a DNA and protein motif discovery tool
    • Grundy, W.N., Bailey, T.L., Elkan, C.P.: ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput. Appl. Biosci. 12 (1996) 303-310
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 303-310
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  • 3
    • 79955159964 scopus 로고    scopus 로고
    • High speed homology search using run-time reconfiguration
    • Yamaguchi, Y., Miyajima, Y., Maruyama, T., Konagaya, A.: High speed homology search using run-time reconfiguration. LNCS. Volume 2438. (2002) 281-291
    • (2002) LNCS , vol.2438 , pp. 281-291
    • Yamaguchi, Y.1    Miyajima, Y.2    Maruyama, T.3    Konagaya, A.4
  • 4
    • 24044471657 scopus 로고    scopus 로고
    • Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
    • Oliver, T., Schmidt, B., Nathan, D., Clemens, R., Maskell, D.: Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. Bioinformatics 21(16) (2005) 3431-3432
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3431-3432
    • Oliver, T.1    Schmidt, B.2    Nathan, D.3    Clemens, R.4    Maskell, D.5
  • 5
    • 14044258692 scopus 로고    scopus 로고
    • Embedded computation of maximum-likelihood phylogeny inference using platform FPGA
    • IEEE
    • Mak, T.S.T., Lam, K.P.: Embedded computation of maximum-likelihood phylogeny inference using platform FPGA. In Proc. Comput. Systems Bioinformatics Conf. CSB'04, IEEE. (2004) 512-514
    • (2004) Proc. Comput. Systems Bioinformatics Conf. CSB'04 , pp. 512-514
    • Mak, T.S.T.1    Lam, K.P.2
  • 7
    • 0033721648 scopus 로고    scopus 로고
    • Extracting structured motifs using a suffix tree-algorithms and application to promoter consensus identification
    • ACM Press
    • Marsan, L., Sagot, M.F.: Extracting structured motifs using a suffix tree-algorithms and application to promoter consensus identification. In: Proc. 4th Int'l Conf. Comput. Mol. Bio. RECOMB'00, ACM Press (2000) 210-219
    • (2000) Proc. 4th Int'l Conf. Comput. Mol. Bio. RECOMB'00 , pp. 210-219
    • Marsan, L.1    Sagot, M.F.2
  • 8
    • 0036107903 scopus 로고    scopus 로고
    • Discovery of regulatory elements by a computational method for phylogenetic footprinting
    • Blanchette, M., Tompa, M.: Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res. 12(5) (2002) 739-748
    • (2002) Genome Res. , vol.12 , Issue.5 , pp. 739-748
    • Blanchette, M.1    Tompa, M.2
  • 9
    • 0042905768 scopus 로고    scopus 로고
    • YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation
    • Sinha, S., Tompa, M.: YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Res. 31(13) (2003) 3586-3588
    • (2003) Nucleic Acids Res. , vol.31 , Issue.13 , pp. 3586-3588
    • Sinha, S.1    Tompa, M.2
  • 10
    • 25444460813 scopus 로고    scopus 로고
    • A multistep bioinformatic approach detects putative regulatory elements in gene promoters
    • Bortoluzzi, S., Coppe, A., Bisognin, A., Pizzi, C., Danieli, G.: A multistep bioinformatic approach detects putative regulatory elements in gene promoters. BMC Bioinformatics 6(1) (2005) 121
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 121
    • Bortoluzzi, S.1    Coppe, A.2    Bisognin, A.3    Pizzi, C.4    Danieli, G.5
  • 11
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    • An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
    • Lawrence, C.E., Reilly, A.A.: An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Proteins 7(1) (1990) 41-51
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    • Lawrence, C.E.1    Reilly, A.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.