Phylogenetic Diversity among Unknown Oral Bacterial Species

Journal of Oral Biosciences

Volumn 47, Issue 1, 2005, Pages 52-59

  Nakazawa, Futoshi ^a,b   Hoshino, Etsuro ^b  

^a HEALTH SCIENCES UNIVERSITY OF HOKKAIDO   (Japan)

^b NIIGATA UNIVERSITY GRADUATE SCHOOL OF MEDICAL AND DENTAL SCIENCES   (Japan)

Author keywords

AAGPR; Cryptobacterium; Mogibacterium; novel oral bacteria; phylogenetic diversity

Indexed keywords

EID: 33750371698     PISSN: 13490079     EISSN: None     Source Type: Journal    
DOI: 10.2330/joralbiosci.47.52     Document Type: Article

References (39)

1. Paster, B.J., Bocches, S. K., Galvin, J.L., Ericson, R. E., Lau, C.N., Levanos, V.A., Sahasrabudhe, A. and Dewhirst, F.E.: Bacterial diversity in human subgingival plaque. J. Bacteriol. 183: 3770–3783, 2001.
2. Kazor, C.E., Mitchell, P.M., Lee, A.M., Stokes, L.N., Loesche, W.J., Dewhirst, F.E. and Paster, B.J.: Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients. J. Clin. Microbiol. 41: 558–563, 2003.
3. Hoshino, E.: Predominant obligate anaerobes in human carious dentin. J. Dent. Res. 64: 1195–1198, 1985.
4. Hoshino, E., Ando, N., Sato, M. and Kota, K.: Bacterial inversion of non-exposed pulp. Int. Endo. J. 25: 2–5, 1992.
5. Uematsu, H. and Hoshino, E.: Predominant obligate anaerobes in human periodontal pockets. J. Periodont. Res. 27: 15–19, 1992.
6. Moore, W.E.C. and Holdeman-Moore, L.V.: Genus Eubacterium. In: Bergey's Manual of Systematic Bacteriology. (eds. Sneath, P.H.A., Mair, N. S., Sharpe, M.E. and Holt, J.G.), pp. 1353–1373, William & Wilkins, Baltimore, 1986.
7. Nakazawa, F. and Hoshino, E.: Immunological Specificity of Oral Eubacterium species. J.Gen. Microbiol. 139: 2635–2640. 1993.
8. Nakazawa, F. and Hoshino, E.: Genetic relationships among Eubacterium species. Int. J. Syst. Bacteriol. 44: 787–790, 1994.
9. Uematsu, H., Nakazawa, F., Ikeda, T. and Hoshino, E.: Eubacterium saphenum sp. nov., Isolated from human periodontal pockets. Int. J. Syst. Bacteriol. 43: 302–304, 1993.
10. Poco, S.E., Jr., Nakazawa, F., Sato, M. and Hoshino, E.; Eubacterium minutum sp. nov., Isolated from human periodontal pockets. Int. J. Syst. Bacteriol. 46: 31–34, 1996.
11. Poco, S.E., Jr., Nakazawa, F., Ikeda, T.M., Sato, T., Sato, E. and Hoshino, E.: Eubacterium exiguum sp. nov., isolated from human oral lesions. Int. J. Syst. Bacteriol. 46: 1120–1124, 1996.
12. Cheeseman, S.L., Hiom, S.J., Weightman, A.J. and Wade, W.G.: Phylogeny of oral asaccharolytic Eubacterium species determined by 16S Ribosomal DNA sequence comparison and proposal of Eubacterium infirmum sp. nov. and Eubacterium tardum sp. nov. Int. J. Syst. Bacteriol. 46: 957–959, 1996.
13. Wade, W.G., Downes, J., Munson, M.A. and Weightman, A. J.: Eubacterium minutum is an earilier synonym of Eubacterium tardum and has priority. Int. J. Syst. Bacteriol. 49: 1939–1941, 1999.
14. Wade, W.G.: The role of Eubacterium species in periodontal disease and other oral infections. Microb. Ecol. Health. Dis. 9: 367–370, 1997.
15. Wade, W.G., Slayne, M.A. and Aldred, M.J.: Comparison of identification methods for oral asaccharolytic Eubacterium species. J. Med. Microbiol. 33: 239–242, 1990.
16. Murdoch, D.A. and Mitchelmore, I.J.: Isolation of Peptostreptococcus heliotrinreducens from human polymicrobial abscesses. Lett. Appl. Micriobiol. 19: 223–225, 1989.
17. Li, N., Hashimoto, Y. and Ezaki, T.: Determination of 16 S ribosomal RNA sequence of all members of the genus Peptostreptococcus and their phylogenetic position. FEMS Microbiol. Lett. 116: 1–6, 1994.
18. Goodacre, R., Hiom, S. J., Cheeseman, S. L., Murdoch, D., Eeightman, A.J. and Wade, W.G.: Identification and discrimination of oral asaccharolytic Eubacterium spp. by pyrolysis mass spectrometry and artificial neural networks. Curr. Microbiol. 32: 77–84, 1996.
19. Wade, W.G., Downes, J., Dymock, D., Hiom, S.J., Weightman, A.J., Dewhirst, F.E., Paster, B.J., Tzellas, N. and Coleman, B.: The family Coribacteriaceae: Reclassification of Eubacterium exiguum (Poco, et al, 1996) and Peptostreptococcus heliotrinreducens (Lanigan, 1976) as Slackia exigua gen. nov., comb. nov. and Slackia heliotrinireducens gen. nov., comb. nov., and Eubacterium lentum (Prevot, 1938) as Eggerthella lenta gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49: 595–600, 1999.
20. Kageyama, A., Benno, Y. and Nakase, T.: Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49: 557–565, 1999.
21. Kageyama, A., Benno, Y. and Nakase, T.: Phylogenetic evidence for the transfer of Eubacterium lentum to the genus Eggerthella as Eggerthella lenta gen. nov., comb. Nov. Int. J. Syst. Bacteriol. 49: 1725–1732, 1999.
22. Nakazawa, F. and Hoshino, E.: DNA-DNA relatedness and phylogenetic positions of Slackia exigua, Slackia heliotrinireducens, Eggerthella lenta and other related bacteria. J. Oral Microbiol. 19: 343–346, 2004.
23. Wilson, M.J., Weightman, A.J. and Wade, W.G.: Application of molecular ecology in the characterization of uncultured microorganisms associated with human disease. Rev. Med. Microbiol. 8: 91–101, 1997.
24. Spratt, D.A., Weightman, A.J. and Wade, W.G.: Diversity of oral asaccharolytic Eubacterium species in periodontitis-identification of novel phylotypes representing uncultivated taxa. Oral Microbiol. Immunol. 14: 56–59, 1999.
25. Nakazawa, F., Poco, S.E., Jr., Ikeda, T., Sato, M., Kalfas, S., Sundqvist, G. and Hoshino, E.: Cryptobacterium curtum gen. nov., sp. nov., a new genus of gram-positive anaerobic rod isolated from human oral cavities. Int. J. Syst. Bacteriol. 49: 1193–1200, 1999.
26. Nakazawa, F., Sato, M., Poco, S.E., Jr., Hashimura, T., Ikeda, T., Kalfas, S., Sundqvist, G. and Hoshino, E.: Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman, et al. 1980) as Mogibacterium timidum gen. nov., comb. nov. Int. J. Syst. Bacteriol. 50: 679–688, 2000.
27. Nakazawa, F., Poco, S.E., Jr., Sato, M., Ikeda, T., Kalfas, S., Sundqvist, G. and Hoshino, E.: Taxonomic characterization of Mogibacterium diversum sp.nov. and Mogibacterium neglectum sp. nov., isolated from human oral cavities. Int. J. Syst. Evol. Microbiol. 51: 115–122, 2002.
28. Wade, W.G.: The role of Eubacterium species in periodontal disease and other oral infections. Microb. Ecol. Health Dis. 9: 367–370, 1997.
29. Tew, J.G., Marshall, D.R., Moore, W.E.C., Best, A. M., Palcanis, K.G. and Ranney, R.R.: Serum antibody reactive with predominant organisms in the subgingival flora of young adults generalized severe periodontitis. Infect. Immun. 48: 303–311, 1985.
30. Vincent, J.W., Falkler, W.A. and Suzuki, J.B.: Systemic antibody of Eubacterium brachy initially and following periodontal therapy. J. Periodontol. 57: 625–631, 1986.
31. Gunsolley, J.C., Tew, J.C., Gooss, C., Marshall, D.R., Burmeister, J.A. and Schenkein, H.A.: Serum antibodies to periodontal bacteria. J. Periodontol. 61: 412–419, 1990.
32. Smith, A.J. and Wade, W.G.: Serum antibody response against oral Eubacterium species in periodontal disease. J. Periodont. Res. 34: 175–178, 1999.
33. Woese, C.R.: Bacterial evolution. Microbiol. Rev. 51: 221–271, 1987.
34. Paster, B.J., Dewhirst, F.E., Olsen, I. and Fraser, G. J.: Phylogeny of Bacteroides, Prevotella and Porphyromonas spp. and related bacteria. J. Bacteriol. 176: 725–732, 1994.
35. Kawamura, Y., Hou, X.G., Todome, Y., Sultana, F., Hirose, K., Shu, S.E., Ezaki, T. and Ohkuni, H.: Streptococcus peroris sp. nov. and Streptococcus infantis sp. nov., new members of the Streptococcus mitis group, isolated from human clinical specimens. Int. J. Syst. Bacteriol. 48: 921–927, 1998.
36. Maidak, B.L., Larsen, N., McCaughey, M.J., Overbeek, R., Olsen, G.J., Fogel, K., Blandy, J. and Woses, C.R.: The Robosomal Database Project. Nucleic Acids Res. 22: 3485–3487, 1994.
37. Nakazawa, F., Zambon, J.J., Reynolds, H.S. and Genco, R.J.: Serological studies of oral Bacteroides intermedius. Infect. Immun. 56: 1647–1651, 1988.
38. Zambon, J. J., Umemoto, T., DeNardin, E., Nakazawa, F., Christersson, L.A. and Genco, R. J.: Actinobacillus actinomycetemcomitans in the pathogenesis of human periodontal disease. Adv. Dent. Res. 2: 269–274, 1988.
39. Djais, A., Nakazawa, F. and Hoshino, E.: Profiles of unknown asaccharolytic anaerobic gram negative cocoids (AAGNC) from human oral cavities. J. Oral Biosci. 46 (Suppl.): 486, 2004.