Real-time quantitative PCR assays for quantification of L1781 ACCase inhibitor resistance allele in leaf and seed pools of Lolium populations

Pest Management Science

Volumn 62, Issue 11, 2006, Pages 1082-1091

  Kaundun, Shiv S ^a   Cleere, Sally M ^a   Stanger, Carole P ^a   Burbidge, Judith M ^a   Windass, John D ^a  

^a JEALOTT S HILL INTERNATIONAL RESEARCH CENTRE   (United Kingdom)

Author keywords

ACCase; Herbicide resistance; I1781L mutation; Lolium; Real time Q PCR

Indexed keywords

ACETYL COENZYME A CARBOXYLASE; PLANT DNA; PRIMER DNA;

AGRONOMY; ALLELE; AMINO ACID; BIOASSAY; COMPARATIVE STUDY; DNA; ENZYME ACTIVITY; GRASS; HERBICIDE; LEAF; MANAGEMENT PRACTICE; MUTATION; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; REAL TIME; SEED; WEED;

ALLELE; ARTICLE; CHEMISTRY; DNA SEQUENCE; DRUG ANTAGONISM; GENETICS; HERBICIDE RESISTANCE; LOLIUM; METHODOLOGY; PLANT LEAF; PLANT SEED; POLYMERASE CHAIN REACTION;

ACETYL-COA CARBOXYLASE; ALLELES; DNA PRIMERS; DNA, PLANT; HERBICIDE RESISTANCE; LOLIUM; PLANT LEAVES; POLYMERASE CHAIN REACTION; SEEDS; SEQUENCE ANALYSIS, DNA;

ALOPECURUS MYOSUROIDES; AVENA FATUA; LOLIUM; SETARIA (PLANT); SETARIA VIRIDIS;

EID: 33750347580     PISSN: 1526498X     EISSN: 15264998     Source Type: Journal    
DOI: 10.1002/ps.1283     Document Type: Article

References (32)

1. Preston C and Mallory-Smith CA, Biochemical mechanisms, inheritance, and molecular genetics of herbicide resistance in weeds, in Herbicide Resistance and World Grains, ed. by Shaner DL. CRC Press LLC, Boca Raton, FL, USA, pp. 23-60 (2001).
2. Heap I, International Survey of Herbicide Resistant Weeds. [Online]. URL (2006). Available: http://www.weedscience.com. [3 August 2006].
3. Preston C and Powles SB, Amitrole inhibits diclofop metabolism and synergises diclofop-methyl in a diclofop-methyl resistant biotype of Lolium rigidum. Pestic Biochem Physiol 62:179-189 (1998).
4. Preston C, Tardif FJ, Christopher JT and Powles SB, Multiple resistance to dissimilar herbicide chemistries in a biotype of Lolium rigidum due to enhanced activity of several herbicide degrading enzymes. Pestic Biochem Physiol 54:123-134 (1996).
5. Tardif FJ and Powles SB, Herbicide multiple-resistance in a Lolium rigidum biotype is endowed by multiple mechanisms: isolation of a subset with resistant acetyl-CoA carboxylase. Physiol Plantarum 91:488-494 (1994).
6. Boutsalis P, Syngenta quick-test: a rapid whole-plant test for herbicide resistance. Weed Technol 15:257-263 (2001).
7. Letouze A and Gasquez J, A rapid reliable test for screening aryloxyphenoxy-propionic acid resistance within Alopecurus myosuroides and Lolium spp. populations. Weed Res 39:37-48 (1999).
8. Masabni JG and Zandstra BH, A serine-to-threonine mutation in linuron-resistant Portulaca oleracea. Weed Sci 47:393-400 (1999).
9. Yu Q, Zhang XQ, Hashem A, Walsh MJ and Powles SB, ALS gene proline (197) mutations confer ALS herbicide resistance in eight separated wild radish (Raphanus raphanistrum) populations. Weed Sci 51:831-838 (2003).
10. Ng CH, Wickneswary R, Salmijah S, Teng YT and Ismail BS, Glyphosate resistance in Eleusine indica (L.) Gaertn. from different origins and polymerase chain reaction amplification of specific alleles. Aust J Agr Res 55:407-414 (2004).
11. Anthony RG, Waldin TR, Ray JA and Bright SWJ, Herbicide resistance caused by spontaneous mutation of the cytoskeletal protein tubulin. Nature (London) 393:260-263 (1998).
12. Zagnitko O, Jelenska J, Tevzadze G, Haselkorn R and Gornicki P, An isoleucine/leucine residue in the carboxyltransferase domain of acetyl-CoA carboxylase is critical for interaction with aryloxyphenoxypropionate and cyclohexanedione inhibitors. Proc Natl Acad Sci USA 98:6617-6622 (2001).
13. Moss SR, Cocker KM, Brown AC, Hall L and Field LM, Characterisation of target-site resistance to ACCase-inhibiting herbicides in the weed Alopecurus myosuroides (black-grass). Pest Manag Sci 59:190-201 (2003).
14. Delye C, Calmes E and Matejicek A, SNP markers for black-grass (Alopecurus myosuroides Huds.) genotypes resistant to acetyl CoA-carboxylase inhibiting herbicides. Theor Appl Genet 104:1114-1120 (2002).
15. Delye C, Wang T and Darmency H, An isoleucine-leucine substitution in chloroplastic acetyl-CoA carboxylase from PCR assay for quantification of ACCase inhibitor resistance green foxtail (Setaria viridis (L.) Beauv.) is responsible for resistance to the cyclohexanedione herbicide sethoxydim. Planta 214:421-427 (2002).
16. Delye C, Matejicek A and Gasquez J, PCR-based detection of resistance to acetyl-CoA carboxylase-inhibiting herbicides in black-grass (Alopecurus myosuroides Huds) and ryegrass (Lolium rigidum Gaud). Pest Manag Sci 58:474-478 (2002).
17. Tal A and Rubin B, Molecular characterization and inheritance of resistance to ACCase-inhibiting herbicides in Lolium rigidum. Pest Manag Sci 60:1013-1018 (2004).
18. Christoffers MJ, Berg ML and Messersmith CG, An isoleucine to leucine mutation in acetyl-CoA carboxylase confers herbicide resistance in wild oat. Genome 45:1049-1056 (2002).
19. Kaundun SS and Windass JD, Derived CAPS, a simple method to detect a key point mutation conferring ACCase inhibitor herbicide resistance in grass weeds. Weed Res 46:34-39 (2006).
20. Newton CR, Graham A, Heptinstall LE, Powell SJ, Summers C, Kalsheker N, et al, Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res 17:2503-2516 (1989).
21. Windass JD, Heaner SP, Renwick A, Whitcombe DM, Little S and Gibson NJ, Methods, WO 00/66773 (2000).
22. Holland PM, Abramson RD, Watson R and Gelfand DH, Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci USA 88:7276-7280 (1991).
23. Whitcombe DM, Theaker J, Guy SP, Brown T and Little S, Detection of PCR products using self-probing amplicons and fluorescence. Nature Biotechnology 17:804-807 (1999).
24. Schwarz G, Baumler S, Block A, Felsenstein FG and Wenzel G, Determination of detection and quantification limits for SNP allele frequency estimation in DNA pools using real time PCR. Nucleic Acids Res 32(3):e24 (2004).
25. Bustin SA and Nolan T, Primers and probes, in A-Z of Quantitative PCR, ed. by Bustin SA. IUL Press, La Jolla, Ca, USA, pp. 279-328 (2004).
26. Whitcombe DM, Ravetto P, Halsall A and Thelwell N, Scorpion primers for real-time genotyping and quantitative genotyping on pooled DNA, in A-Z of Quantitative PCR, ed. by Bustin SA. pp. 767-782 (2004).
27. Santa Lucia J, A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 95:1460-1465 (1998).
28. Zucker M, On finding all suboptimal foldings of an RNA molecule. Science (Washington) 244:48-52 (1989).
29. Germer S, Holland MJ and Higuchi R, High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR. Genome Res 10:258-266 (2000).
30. Whitecombe DM, Ravetto P, Halsall A and Thelwell N, Scorpion primers for real-time genotyping and quantitative genotyping on pooled DNA, in A-Z of Quantitative PCR, ed. by Bustin SA. pp. 767-782 (2004).
31. Devine MD, Acetyl-CoA carboxylase inhibitors, in Herbicide Classes in Development, ed. by Hirai K. Springer-Verlag, Berlin-Heidelberg, pp. 103-113 (2002).
32. Delye C, Zhang X-Q, Michel A, Matejicek A and Powles SB, Molecular bases for sensitivity to acetyl-coenzyme A carboxylase inhibitors in black-grass. Plant Physiol 137:794-806 (2005).