Molecular analysis of metabolic pathway with graph transformation

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4178 LNCS, Issue , 2006, Pages 107-121

  Ehrig, Karsten ^a   Heckel, Reiko ^a   Lajios, Georgios ^a  

^a UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CARBON; COMPUTER SIMULATION; GRAPH THEORY; MATHEMATICAL TRANSFORMATIONS; REACTION KINETICS;

GRAPH TRANSFORMATION; HYPERGRAPH GRAMMARS; METABOLIC PATHWAY; MOLECULAR ANALYSIS;

METABOLISM;

EID: 33750242689     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11841883_9     Document Type: Conference Paper

References (13)

1. Attributed Graph Grammar (AGG) Tool Environment, http://tfs.cs.tu-berlin. de/agg, 2006.
2. L. Cardelli, S. Pradalier, Where Membranes Meet Complexes. Proceedings of BioConcur 2005.
3. V. Claus, H. Ehrig, G. Rozenberg (eds.), Graph-Grammars and Their Application to Computer Science and Biology. International Workshop, Bad Honnef, LNCS 73, pages 389-400, Springer 1979.
4. F. A. Cotton, Chemical Applications of Group Theory. Wiley 1990.
5. IUPAC Basic Terminology of Stereochemistry. Pure & Applied Chemistry, Vol. 68, No. 12, pp. 2193-2222, 1996.
6. M. Löwe, Algebraic Approach to Single-Pushout Graph Transformation. Theoretical Computer Science Vol. 109(1&2), pages 181-224, 1993.
7. J. S. McCaskill, Ulrich Niemann, Graph Replacement Chemistry for DNA Processing. Lecture Notes in Computer Science, Volume 2054, pages 103-116, Springer 2001.
8. A.D. Mesecar, D.E. Koshland Jr., A new model for protein sterospecificity. Nature Vol. 403, pages 614-615, 2000.
9. F. Rosselló, G. Valiente, Graph Transformation in Molecular Biology. In H.-J. Kreowski, U. Montanari, F. Orejas. G. Rozenberg, G. Taentzer (Ed.), Formal Methods in Software and System Modeling, Lecture Notes in Computer Science 3393, pages 116-133, Springer 2005.
10. F. Rosselló, G. Valiente, Analysis of Metabolic Pathways by Graph Transformation. Proceedings 2nd International Conference of Graph Transformation (ICGT'04), Springer LNCS 3256, pages 70-82, 2004.
11. G. Taentzer, AGG: A Graph Transformation Environment for Modeling and Validation of Software, Proc. Application of Graph Transformations with Industrial Relevance (AGTIVE'03), Pfaltz, J. and Nagl, M., pages 446-453, Charlottesville/Virgina, USA, 2003, http://tfs.cs.tu-berlin.de/agg.
12. Maneesh K. Yadav, Brian P. Kelley, and Steven M. Silverman, The Potential of a Chemical Graph Transformation System. Proceedings 2nd International Conference of Graph Transformation (ICGT'04), Springer LNCS 3256, pages 83-95, 2004.
13. G.L. Zubay, W. W. Parson, D. E. Vance, Principles of Biochemisty, Vol. 2, 1995.