Plant growth-promoting Pseudomonas bearing catabolic plasmids: Naphthalene degradation and effect on plants

Process Biochemistry

Volumn 41, Issue 12, 2006, Pages 2417-2423

  Anokhina, Tatyana O ^a   Volkova, Olga V ^a,b   Puntus, Irina F ^a   Filonov, Andrei E ^a,b   Kochetkov, Vladimir V ^a,b   Boronin, Alexander M ^a,b  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

^b PUSHCHINO STATE UNIVERSITY   (Russian Federation)

Author keywords

Naphthalene; Plant growth promoting rhizosphere bacteria Pseudomonas; Plant bacteria interactions; Plasmids

Indexed keywords

BIODEGRADATION; GROWTH KINETICS; PARAMETER ESTIMATION; PLANTS (BOTANY); STABILITY; TOXICITY;

NAPHTHALENE DEGRADATION; PLANT BACTERIA INTERACTIONS; PLANT GROWTH PROMOTING RHIZOSPHERE BACTERIA PSEUDOMONAS; PLASMIDS;

NAPHTHALENE;

BACTERIA (MICROORGANISMS); BRASSICA; PSEUDOMONAS; PSEUDOMONAS CHLORORAPHIS; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA;

EID: 33750194693     PISSN: 13595113     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.procbio.2006.06.026     Document Type: Article

References (37)

1. Compant S., Duffy B., Nowak J., Clement C., and Barka E.A. Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71 9 (2005) 4951-4959
2. Haas D., and Defago G. Biological control of soil-born pathogens by fluorescent pseudomonads. Nat Rev Microbiol 3 4 (2005) 307-319
3. Bloemberg G.V., and Lugtenberg B.J. Molecular basis of plant growth promotion and biocontrol by rhizobacteria. Curr Opin Plant Biol 4 4 (2001) 343-350
4. Shoda M. Bacterial control of plant disease. J Biosci Bioeng 89 6 (2000) 515-521
5. Cerniglia C.E. Biodegradation of polycyclic aromatic hydrocarbons. Curr Opin Biotechnol 4 (1993) 331-338
6. Kochetkov V.V., and Boronin A.M. Comparative study of plasmids controlling naphthalene degradation by Pseudomonas. Microbiology (translated from Mikrobiologiya) 53 4 (1984) 639-644
7. Yen K.M., and Serdar C.M. Genetics of naphthalene catabolism in Pseudomonads. CRC Crit Rev Microbiol 15 3 (1988) 247-268
8. Habe H., and Omori T. Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci Biotechnol Biochem 67 2 (2003) 225-243
9. Kiyohara H., and Nagao K. The catabolism of phenanthrene and naphthalene by bacteria. J Gen Microbiol 105 (1978) 69-75
10. Kosheleva I.A., Tsoi T.V., Kulakova A.N., and Boronin A.M. Comparative analysis of the organization of the NPL-1 plasmid controlling naphthalene oxidation in Pseudomonas putida and its derivatives. Genetika (in Russian) 22 10 (1986) 2389-2397
11. Boronin A.M., Starovoitov I.I., Borisoglebskaya A.N., and Skryabin G.K. Plasmid of Pseudomonas putida which controls initial stages of naphthalene oxidation. Dokl Acad Nauk SSSR (in Russian) 228 4 (1976) 962-965
12. Boronin A.M., Kulakova A.N., Tsoi T.V., Kosheleva I.A., and Kochetkov V.V. 'Silent' genes of meta-pathway of catechol oxidation in the composition of plasmids of naphthalene biodegradation. Dokl Acad Nauk SSSR (in Russian) 299 1 (1988) 237-240
13. Kulakova A.N., and Boronin A.M. Mutants of plasmid of naphthalene biodegradation determining the oxidation of catechol along the meta-pathway. Microbiology (translated from Mikrobiologiya) 58 2 (1989) 298-304
14. Nazarov A.V., and Ilarionov S.A. Potential of the use of microbial-plant interaction for bioremediation. Biotechnology (in Russian) 5 (2005) 54-62
15. Chin-A-Woeng T.F., Bloemberg G.V., Mulders I.H., Dekkers L.C., and Lugtenberg B.J. Root colonization by phenazine-1-carboxamide-producing bacterium Pseudomonas chlororaphis PCL1391 is essential for biocontrol of tomato foot and root rot. Mol Plant Microbe Interact 13 12 (2000) 1340-1345
16. Kochetkov V.V., Balakshina V.V., Mordukhova E.A., and Boronin A.M. Plasmids encoding naphthalene biodegradation in rhizosphere bacteria of the genus Pseudomonas. Mikrobiologiya (in Russian) 66 2 (1997) 211-216
17. Delaney S.M., Mavrodi D.V., and Bonsall R.F. Thomashow LS. phzO, a gene for biosynthesis of 2-hydroxylated phenazine compounds in Pseudomonas aureofaciens 30-84. J Bacteriol 183 1 (2001) 318-327
18. Sambrook J., and Russel D.W. Molecular Cloning: A laboratory manual. 3rd ed. (2001), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
19. Evans C.G.T., Herbert D., and Tempest D.B. The continuous cultivation of microorganisms. Construction of a Chemostat. Meth Microbiol 2 (1970) 277-327
20. Pirt SJ. Principles of microbe and cell cultivation. Moscow: Mir, 1978.
21. Dunn N.W., and Gunsalus I.C. Transmissible plasmids coding early enzymes of naphthalene oxidation in Pseudomonas putida. J Bacteriol 114 3 (1973) 974-979
22. Eckhardt T. A rapid method for the identification of plasmid desoxyribonucleic acid in bacteria. Plasmid 1 4 (1978) 584-588
23. Dua R.D., and Meera S. Purification and characterization of naphthalene oxygenase from Corynebacterium renale. Eur J Biochem 120 3 (1981) 461-465
24. Shamsuzzaman K.M., and Barnsley E.A. The regulation of naphthalene metabolism in pseudomonads. Biochem Biophys Res Commun 60 2 (1974) 582-589
25. Hegeman G.D. Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type. J Bacteriol 91 3 (1966) 1140-1154
26. Feist C.F., and Hegeman G.D. Phenol and benzoate metabolism by Pseudomonas putida: regulation of tangential pathways. J Bacteriol 100 2 (1969) 869-877
27. Kalb V.F., and Bernlohr R.W. A new spectrophotometric assay for protein in cell extract. Anal Biochem 82 2 (1977) 362-371
28. Simons M., van der Bij A.J., Brand I., de Weger L.A., Wijffelman C.A., and Lugtenberg B.J. Gnotobiotic system for studying rhizosphere colonization by plant growth-promoting Pseudomonas bacteria. Mol Plant Microbe Interact 9 7 (1996) 600-607
29. Kulaichev AP. Methods and software for data processing in the operational environment Windows. Stadia 6.0. In: Informatics and computers. Moscow, 1996.
30. Volkova O.V., Anokhina T.O., Puntus I.F., Filonov A.E., Kochetkov V.V., and Boronin A.M. Effects of naphthalene degradative plasmids on the physiological characteristics of rhizosphere bacteria of the genus Pseudomonas. Appl Biochem Microbiol (in Russian) 41 5 (2005) 460-464
31. Cane P.A., and Williams P.A. The plasmid-coded metabolism of naphthalene and 2-methylnaphthalene in Pseudomonas putida strains: phenotypic changes correlated with structural modification of the plasmid pWW60-1. J Gen Microbiol 128 (1982) 2281-2290
32. Reineke W., Jeenes D.J., Williams P.A., and Knackmuss H.J. TOL plasmid pWWO in constructed halobenzoate degrading Pseudomonas strains: prevention of meta pathway. J Bacteriol 150 1 (1982) 195-201
33. Mordukhova E.A., Kochetkov V.V., Polikarpova F.Y., and Boronin A.M. Synthesis of indole-3-acetic acid by rhizosphere pseudomonads: effect of biodegradative plasmids. Appl Biochem Microbiol (in Russian) 34 (1998) 287-292
34. Kuiper I., Bloemberg G.V., and Lugtenberg B.J. Selection of a plant-bacterium pair as a novel tool for rhizostimulation of polycyclic aromatic hydrocarbon-degrading bacteria. Mol Plant Microbe Interact 14 10 (2001) 1197-1205
35. Boronin A.M., Filonov A.E., Gayazov R.R., Kulakova A.N., and Mshensky Y.N. Growth and plasmid-encoded naphthalene catabolism of Pseudomonas putida in batch culture. FEMS Microbiol Lett 113 3 (1993) 303-307
36. Filonov A.E., Duetz W.A., Karpov A.V., Gayazov R.R., Kosheleva I.A., Breure A.M., Filonova I.F., van Andel J.G., and Boronin A.M. Competition of plasmid-bearing Pseudomonas putida strains catabolizing naphtalene via various pathways in chemostat culture. Appl Microbiol Biotechnol 48 4 (1997) 493-498
37. Filonov A.E., Karpov A.V., Kosheleva I.A., Puntus I.F., Balashova N.V., and Boronin A.M. The efficiency of salicylate utilization by Pseudomonas putida strains catabolizing naphthalene via different biochemical pathways. Process Biochem 35 (2000) 983-987