Bacterial and cyanobacterial diversities determined by T - RFLP analyses in the Jiaozhou Bay

Acta Oceanologica Sinica

Volumn 25, Issue 4, 2006, Pages 113-123

  Ren, Jing ^a,b   Dang, Hongyue ^b   Song, Linsheng ^b   Sun, Song ^b   An, Liguo ^a  

^a SHANDONG NORMAL UNIVERSITY   (China)

^b INSTITUTE OF OCEANOLOGY   (China)

Author keywords

16S rDNA; Bacterial diversity; Cyanobacteria; Jiaozhou Bay; T RFLP

Indexed keywords

ABUNDANCE; CYANOBACTERIUM; DNA; MICROBIAL COMMUNITY; MICROSCOPY; POPULATION DENSITY; SEAWATER; SPECIES DIVERSITY;

ASIA; CHINA; EURASIA; FAR EAST; JIAOZHOU BAY; SHANDONG;

BACTERIA (MICROORGANISMS); CYANOBACTERIA;

EID: 33750117287     PISSN: 0253505X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (29)

1. Amann R I, Ludwig W, Schleifer K H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews, 59: 143-69
2. Benlloch B, Rodr guez-Valera F, Acinas S G, et al. 1996. Heterotrophic bacteria, activity and bacterial diversity in two coastal lagoons as detected by culture and 16S rRNA genes PCR amplification and partial sequencing. Hydrobiologia, 329: 3-17
3. Derakshani M, Lukow T, Liesack W. 2001. Novel bacterial lineages at the (sub) division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms. Applied and Environmental Microbiology, 67: 623-631
4. Drake L A, Choi K H, Haskell A G E, et al. 1998. Vertical profiles of virus-like particles and bacteria in the water column and sediments of Chesapeake Bay, USA. Aquatic Microbial Ecology, 16: 17-25
5. Dunbar J, Ticknor L O, Kuske C R. 2001. Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities. Applied and Environmental Microbiology, 67: 190-197
6. Egert M, Marhan S, Wagner B, et al. 2004. Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L. (Oligochaeta: Lumbricidae). FEMS Microbiology Ecology, 48: 187-197
7. Felske A, Akkermans A D L. 1998. Spatial homogeneity of abundant bacterial 16S rRNA molecules in Grassland soils. Microbial Ecology, 36: 31-36
8. Gasol J M, Garces E, Vila M. 2005. Strong small-scale temporal bacterial changes associated with the migrations of bloom-forming dinoflagellates. Harmful Algae, 4: 771-781
9. Harder T, Lau S C K, Tam W Y, et al. 2004. A bacterial culture-independent method to investigate chemically mediated control of bacterial epibiosis in marine invertebrates by using TRFLP analysis and natural bacterial populations. FEMS Microbiology Ecology, 47: 93-99
10. Hiraishi A, Iwasaki M, Shinjo H. 2000. Terminal restriction pattern analysis of the 16S rRNA genes for the characterization of bacterial communities of activated sludge. Journal of Bioscience and Bioengineering, 90: 148-156
11. Kibe R, Sakamoto M, Hayashi H, et al. 2004. Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries. FEMS Microbiology Letters, 235: 139-146
12. Liu W T, Marsh T L, Cheng H, et al. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol, 63: 4 516-4 522
13. Ludemann H, Arth I, Liesack W. 2000. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Applied and Environmental Microbiology, 66: 754-762
14. Lukow T, Dunfield P F, Liesack W. 2000. Use of the TRFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiology Ecology, 32: 241-247
15. Marsh T L, Liu W T, Forney L J, et al. 1998. Beginning a molecular analysis of the eukaryal community in activated sludge. Water Science & Technology, 37: 455-460
16. Moeseneder M M, Winter C, Arrieta J M, et al. 2001. Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. Journal of Microbiological Methods, 44: 159-172
17. Muyzer G, De Waal E C, Uitterlinden A G. 1993. Profiling of complex analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology, 59: 695-700
18. Oceans & Fisheries Bureau of Qingdao. 2004. Bulletin of Marine Environmental Quality of Qingdao City. Qingdao: Oceans & Fisheries Bureau of Qingdao
19. Osborn A M, Moore E R B, Timmis K N. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environment Microbiology, 2: 39-50
20. Porter K G, Feig Y S. 1980. The use of DAPI for identifying, and counting aquatic microflora. Limnology and Oceanography, 25: 943-946
21. Sakamia T, Aboa K, Takayanagia K, et al. 2003. Effects of water mass exchange on bacterial communities in an aquaculture area during summer. Estuarine, Coastal and Shelf Science, 56: 111-118
22. Sanders R W, Caron D A, Berninger U G. 1992. Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: an inter-ecosystem comparison. Marine Ecology Progress Series, 86: 1-14
23. Shen Zhiling. 2001. Historical changes in nutrient structure and its influences on phytoplankton composition in Jiaozhou Bay. Estuarine, Coastal and Shelf Science, 52: 211-224
24. Wang Wenqi, Qian Zhenru. 2000. Study of heterotrophic bacteria, coliform bacteria and oil decomposing bacteria in the Jaiozhou Bay. Marine Sciences (in Chinese), 24(1):37-39
25. Wu Madeline, Song Linsheng, Ren Jianping, et al. 2004. Assessment of microbial dynamic in the Pearl River Estuary by 16S rRNA terminal restriction fragment analysis. Continental Shelf Research, 24: 1 925-1 934
26. Wu Yulin, Sun Song, Zhang Yongshan, et al. 2004. Quantitative study on long-term variation of phytoplankton in Jiaozhou Bay. Oceanologia et Limnologia Sinica (in Chinese). 35 (6): 518-523
27. Yin Ping, Lu Yingxian. 2000. Environmental evolution and sustainable utilization of Jiaozhou Bay. Coastal Engineering (in Chinese), 19(3):14-22
28. Zhao Shujiang, Jiao Nianzhi, Wu Changwen, et al. 2005. Evolution of nutrient structure and phytoplankton composition in the Jiaozhou Bay ecosystem. J Environ Sci, 17(1): 95-102
29. Zhao Shujiang, Jiao Nianzhi, Shen Zhiliang, et al. 2005. Causes and Consequences of Changes in Nutrient Structure in the Jiaozhou Bay. Journal of Integrative Plant Biology (Formerly Acta Botanica Sinica), 47 (4): 396-410