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Volumn 383, Issue , 2006, Pages 81-92

Intra-specific variability and unusual organization of the repetitive units in a satellite DNA from Rana dalmatina: Molecular evidence of a new mechanism of DNA repair acting on satellite DNA

Author keywords

DNA repair; Evolution; Heterochromatin; Homologous recombination; Rolling circle; Satellite DNA

Indexed keywords

SATELLITE DNA;

EID: 33750092265     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.07.016     Document Type: Article
Times cited : (32)

References (39)
  • 1
    • 0018855764 scopus 로고
    • A function for satellite DNA?
    • Bostock C. A function for satellite DNA?. Trends Biochem. Sci. 5 (1980) 117-119
    • (1980) Trends Biochem. Sci. , vol.5 , pp. 117-119
    • Bostock, C.1
  • 2
    • 0014030013 scopus 로고
    • Heterochromatin
    • Brown S.W. Heterochromatin. Science 151 (1966) 417-425
    • (1966) Science , vol.151 , pp. 417-425
    • Brown, S.W.1
  • 3
    • 0019248018 scopus 로고
    • Molecular arrangement and evolution of heterochromatic DNA
    • Brutlag D.L. Molecular arrangement and evolution of heterochromatic DNA. Annu. Rev. Genet. 14 (1980) 121-144
    • (1980) Annu. Rev. Genet. , vol.14 , pp. 121-144
    • Brutlag, D.L.1
  • 4
    • 0037633468 scopus 로고    scopus 로고
    • An unusual satellite DNA from Zamia paucijuga (Cycadales) characterised by two different organisations of the repetitive unit in the plant genome
    • Cafasso D., Cozzolino S., De Luca P., and Chinali G. An unusual satellite DNA from Zamia paucijuga (Cycadales) characterised by two different organisations of the repetitive unit in the plant genome. Gene 311 (2003) 71-79
    • (2003) Gene , vol.311 , pp. 71-79
    • Cafasso, D.1    Cozzolino, S.2    De Luca, P.3    Chinali, G.4
  • 5
    • 0031252007 scopus 로고    scopus 로고
    • A family of centromeric satellite DNA from the European brown frog Rana graeca italica
    • Cardone D.E., Feliciello I., Marotta M., Rosati C., and Chinali G. A family of centromeric satellite DNA from the European brown frog Rana graeca italica. Genome 40 (1997) 774-781
    • (1997) Genome , vol.40 , pp. 774-781
    • Cardone, D.E.1    Feliciello, I.2    Marotta, M.3    Rosati, C.4    Chinali, G.5
  • 6
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth B., Sniegowski P., and Stephan W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371 (1994) 215-220
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 7
    • 0032824151 scopus 로고    scopus 로고
    • Regulated formation of extrachromosomal circular DNA molecules during development of Xenopus laevis
    • Cohen S., Menut S., and Méchali M. Regulated formation of extrachromosomal circular DNA molecules during development of Xenopus laevis. Mol. Cell. Biol. 19 (1999) 6682-6689
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 6682-6689
    • Cohen, S.1    Menut, S.2    Méchali, M.3
  • 8
    • 0035100173 scopus 로고    scopus 로고
    • Slow rates of evolution and sequence homogenization in an ancient satellite DNA family of sturgeons
    • de la Herran R., et al. Slow rates of evolution and sequence homogenization in an ancient satellite DNA family of sturgeons. Mol. Biol. Evol. 18 (2001) 432-436
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 432-436
    • de la Herran, R.1
  • 9
    • 0020478245 scopus 로고
    • Molecular drive: a cohesive model of species evolution
    • Dover G. Molecular drive: a cohesive model of species evolution. Nature 299 (1982) 111-117
    • (1982) Nature , vol.299 , pp. 111-117
    • Dover, G.1
  • 10
    • 0037371987 scopus 로고    scopus 로고
    • Satellite DNA hypomethylation in karyotyped Wilms tumors
    • Ehrlich M., et al. Satellite DNA hypomethylation in karyotyped Wilms tumors. Cancer Genet. Cytogenet. 141 (2003) 97-105
    • (2003) Cancer Genet. Cytogenet. , vol.141 , pp. 97-105
    • Ehrlich, M.1
  • 11
    • 0027248058 scopus 로고
    • A modified alkaline lysis method for the preparation of highly purified plasmid DNA from Escherichia coli
    • Feliciello I., and Chinali G. A modified alkaline lysis method for the preparation of highly purified plasmid DNA from Escherichia coli. Anal. Biochem. 212 (1993) 394-401
    • (1993) Anal. Biochem. , vol.212 , pp. 394-401
    • Feliciello, I.1    Chinali, G.2
  • 12
    • 17044398521 scopus 로고    scopus 로고
    • The first characterisation of the overall variability of repetitive units in a species reveals unexpected features of satellite DNA
    • Feliciello I., Picariello O., and Chinali G. The first characterisation of the overall variability of repetitive units in a species reveals unexpected features of satellite DNA. Gene 349 (2005) 153-164
    • (2005) Gene , vol.349 , pp. 153-164
    • Feliciello, I.1    Picariello, O.2    Chinali, G.3
  • 13
    • 0028038757 scopus 로고
    • Evidence for nuclear phasing and a novel protein specifically binding to cucumber satellite DNA
    • Fischer T.C., Groner S., Zentgraf U., and Hemleben V. Evidence for nuclear phasing and a novel protein specifically binding to cucumber satellite DNA. Z. Naturforsch. 49 (1994) 79-86
    • (1994) Z. Naturforsch. , vol.49 , pp. 79-86
    • Fischer, T.C.1    Groner, S.2    Zentgraf, U.3    Hemleben, V.4
  • 14
    • 85032131319 scopus 로고
    • Punctuated equilibria: the tempo and mode of evolution reconsidered
    • Gould S.J., and Eldredge N. Punctuated equilibria: the tempo and mode of evolution reconsidered. Paleobiology 3 (1977) 115-151
    • (1977) Paleobiology , vol.3 , pp. 115-151
    • Gould, S.J.1    Eldredge, N.2
  • 15
    • 0023814975 scopus 로고
    • Purification and characterization of W-protein. A DNA-binding protein showing high affinity for the W chromosome-specific repetitive DNA sequences of chicken
    • Harada M., Ouchi K., Ohata S., Kikuchi A., and Mizuno S. Purification and characterization of W-protein. A DNA-binding protein showing high affinity for the W chromosome-specific repetitive DNA sequences of chicken. J. Biol. Chem. 263 (1988) 13952-13961
    • (1988) J. Biol. Chem. , vol.263 , pp. 13952-13961
    • Harada, M.1    Ouchi, K.2    Ohata, S.3    Kikuchi, A.4    Mizuno, S.5
  • 16
    • 0033985560 scopus 로고    scopus 로고
    • Heterochromatin function in complex genomes
    • Henikoff S. Heterochromatin function in complex genomes. Biochim. Biophys. Acta 1470 (2000) 1-8
    • (2000) Biochim. Biophys. Acta , vol.1470 , pp. 1-8
    • Henikoff, S.1
  • 17
    • 0015840657 scopus 로고
    • The amplification of ribosomal RNA genes involves a rolling circle intermediate
    • Hourcade D., Dressler D., and Wolfson J. The amplification of ribosomal RNA genes involves a rolling circle intermediate. Proc. Natl. Acad. Sci. U. S. A. 70 (1973) 2926-2930
    • (1973) Proc. Natl. Acad. Sci. U. S. A. , vol.70 , pp. 2926-2930
    • Hourcade, D.1    Dressler, D.2    Wolfson, J.3
  • 18
    • 0018552643 scopus 로고
    • Functional aspects of satellite DNA and heterochromatin
    • John B., and Miklos G.L.G. Functional aspects of satellite DNA and heterochromatin. Int. Rev. Cytol. 58 (1979) 1-114
    • (1979) Int. Rev. Cytol. , vol.58 , pp. 1-114
    • John, B.1    Miklos, G.L.G.2
  • 19
    • 12744269455 scopus 로고    scopus 로고
    • Subcellular distribution of HP1 proteins is altered in ICF syndrome
    • Luciani J.J., et al. Subcellular distribution of HP1 proteins is altered in ICF syndrome. Eur. J. Hum. Genet. 13 (2005) 41-51
    • (2005) Eur. J. Hum. Genet. , vol.13 , pp. 41-51
    • Luciani, J.J.1
  • 20
    • 0035103847 scopus 로고    scopus 로고
    • Adaptive evolution of Cid, a centromere-specific histone in Drosophila
    • Malik H.S., and Henikoff S. Adaptive evolution of Cid, a centromere-specific histone in Drosophila. Genetics 157 (2001) 1293-1298
    • (2001) Genetics , vol.157 , pp. 1293-1298
    • Malik, H.S.1    Henikoff, S.2
  • 21
    • 0027168482 scopus 로고
    • Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus)
    • Modi W.S. Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus). J. Mol. Evol. 37 (1993) 48-56
    • (1993) J. Mol. Evol. , vol.37 , pp. 48-56
    • Modi, W.S.1
  • 22
    • 0037355216 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres
    • Nagaki K., et al. Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres. Genetics 163 (2003) 1221-1225
    • (2003) Genetics , vol.163 , pp. 1221-1225
    • Nagaki, K.1
  • 23
    • 0004497970 scopus 로고
    • Localization of the nucleolar organizer and heterochromatin evolution in three European brown frogs: Rana dalmatina, Rana graeca, Rana iberica
    • Odierna G. Localization of the nucleolar organizer and heterochromatin evolution in three European brown frogs: Rana dalmatina, Rana graeca, Rana iberica. Amphib.-Reptil. 10 (1989) 387-396
    • (1989) Amphib.-Reptil. , vol.10 , pp. 387-396
    • Odierna, G.1
  • 24
  • 25
    • 0036008820 scopus 로고    scopus 로고
    • The S1 satellite DNA as a taxonomic marker in brown frogs: molecular evidence that Rana graeca graeca and Rana graeca italica are different species
    • Picariello O., Feliciello I., Bellinello R., and Chinali G. The S1 satellite DNA as a taxonomic marker in brown frogs: molecular evidence that Rana graeca graeca and Rana graeca italica are different species. Genome 45 (2002) 63-70
    • (2002) Genome , vol.45 , pp. 63-70
    • Picariello, O.1    Feliciello, I.2    Bellinello, R.3    Chinali, G.4
  • 26
    • 0034698107 scopus 로고    scopus 로고
    • Human satellite 3 (HS3) binding protein from the nuclear matrix: isolation and binding properties
    • Podgornaya O.I., Dey R., Lobov I., and Enukashvily N.I. Human satellite 3 (HS3) binding protein from the nuclear matrix: isolation and binding properties. Biochim. Biophys. Acta 1497 (2000) 204-214
    • (2000) Biochim. Biophys. Acta , vol.1497 , pp. 204-214
    • Podgornaya, O.I.1    Dey, R.2    Lobov, I.3    Enukashvily, N.I.4
  • 27
    • 0023660409 scopus 로고
    • Some extrachromosomal circular DNAs from Drosophila embryos are homologous to tandemly repeated genes
    • Pont G., Degroote F., and Picard G. Some extrachromosomal circular DNAs from Drosophila embryos are homologous to tandemly repeated genes. J. Mol. Biol. 195 (1987) 447-451
    • (1987) J. Mol. Biol. , vol.195 , pp. 447-451
    • Pont, G.1    Degroote, F.2    Picard, G.3
  • 28
    • 0001800866 scopus 로고
    • Investigating the genetic control of biochemical events in meiotic recombination
    • Moens P.B. (Ed), Academic Press, New York
    • Resnick M.A. Investigating the genetic control of biochemical events in meiotic recombination. In: Moens P.B. (Ed). Meiosis (1987), Academic Press, New York 157-210
    • (1987) Meiosis , pp. 157-210
    • Resnick, M.A.1
  • 29
    • 0036911492 scopus 로고    scopus 로고
    • Evidence for a fast, intrachromosomal conversion mechanism from mapping of nucleotide variants within a homogeneous alpha-satellite DNA array
    • Schindelhauer D., and Schwarz T. Evidence for a fast, intrachromosomal conversion mechanism from mapping of nucleotide variants within a homogeneous alpha-satellite DNA array. Genome Res. 12 (2002) 1815-1826
    • (2002) Genome Res. , vol.12 , pp. 1815-1826
    • Schindelhauer, D.1    Schwarz, T.2
  • 30
    • 0028174439 scopus 로고
    • Distribution of X-ray-induced G2 chromatid damage among Chinese hamster chromosomes: influence of chromatin conformation
    • Slijepcevic P., and Natarajan A.T. Distribution of X-ray-induced G2 chromatid damage among Chinese hamster chromosomes: influence of chromatin conformation. Mutat. Res. 323 (1994) 113-119
    • (1994) Mutat. Res. , vol.323 , pp. 113-119
    • Slijepcevic, P.1    Natarajan, A.T.2
  • 31
    • 0017294484 scopus 로고
    • Evolution of repeated sequences by unequal crossover
    • Smith G.P. Evolution of repeated sequences by unequal crossover. Science 191 (1976) 528-535
    • (1976) Science , vol.191 , pp. 528-535
    • Smith, G.P.1
  • 32
    • 0024538748 scopus 로고
    • Tandem-repetitive noncoding DNA: forms and forces
    • Stephan W. Tandem-repetitive noncoding DNA: forms and forces. Mol. Biol. Evol. 6 (1989) 198-212
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 198-212
    • Stephan, W.1
  • 33
  • 34
    • 0036016437 scopus 로고    scopus 로고
    • Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant
    • Talbert P.B., Masuelli R., Tyagi A.P., Comai L., and Henikoff S. Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant. Plant Cell 14 (2002) 1053-1066
    • (2002) Plant Cell , vol.14 , pp. 1053-1066
    • Talbert, P.B.1    Masuelli, R.2    Tyagi, A.P.3    Comai, L.4    Henikoff, S.5
  • 35
    • 0033933366 scopus 로고    scopus 로고
    • DNA hypomethylation and unusual chromosome instability in cell lines from ICF syndrome patients
    • Tuck-Muller C.M., et al. DNA hypomethylation and unusual chromosome instability in cell lines from ICF syndrome patients. Cytogenet. Cell Genet. 89 (2000) 121-128
    • (2000) Cytogenet. Cell Genet. , vol.89 , pp. 121-128
    • Tuck-Muller, C.M.1
  • 36
    • 0023297258 scopus 로고
    • Persistence of tandem arrays: implication for satellite and simple-sequence DNAs
    • Walsh J.B. Persistence of tandem arrays: implication for satellite and simple-sequence DNAs. Genetics 115 (1987) 553-567
    • (1987) Genetics , vol.115 , pp. 553-567
    • Walsh, J.B.1
  • 37
    • 0024379003 scopus 로고
    • Long-range organization of tandem arrays of α satellite DNA at the centromeres of human chromosomes: high-frequency array-length polymorphism and meiotic stability
    • Wevrick R., and Willard H.F. Long-range organization of tandem arrays of α satellite DNA at the centromeres of human chromosomes: high-frequency array-length polymorphism and meiotic stability. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 9394-9398
    • (1989) Proc. Natl. Acad. Sci. U. S. A. , vol.86 , pp. 9394-9398
    • Wevrick, R.1    Willard, H.F.2
  • 38
    • 0034880162 scopus 로고    scopus 로고
    • Hypomethylation of chromosome 1 heterochromatin DNA correlates with q-arm copy gain in human hepatocellular carcinoma
    • Wong N., et al. Hypomethylation of chromosome 1 heterochromatin DNA correlates with q-arm copy gain in human hepatocellular carcinoma. Am. J. Pathol. 159 (2001) 465-471
    • (2001) Am. J. Pathol. , vol.159 , pp. 465-471
    • Wong, N.1
  • 39
    • 0023149088 scopus 로고
    • A plausible mechanism for a large-scale chromosomal DNA amplification in streptomycetes
    • Young M., and Cullum J. A plausible mechanism for a large-scale chromosomal DNA amplification in streptomycetes. FEBS Lett. 212 (1987) 10-14
    • (1987) FEBS Lett. , vol.212 , pp. 10-14
    • Young, M.1    Cullum, J.2


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