Simulating deformations of MR brain images for validation of atlas-based segmentation and registration algorithms

NeuroImage

Volumn 33, Issue 3, 2006, Pages 855-866

  Xue, Zhong ^a   Shen, Dinggang ^a   Karacali, Bilge ^a   Stern, Joshua ^b   Rottenberg, David ^b   Davatzikos, Christos ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BRAIN ATROPHY; BRAIN MATURATION; COMPUTER SIMULATION; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; IMAGE RECONSTRUCTION; INTERNET; INTRARATER RELIABILITY; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; RANDOMIZATION; STATISTICAL ANALYSIS; VALIDATION STUDY;

ALGORITHMS; ANALYSIS OF VARIANCE; ATLASES; ATLASES AS TOPIC; ATROPHY; BRAIN; COMPUTER SIMULATION; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MARKOV CHAINS; MODELS, STATISTICAL; REPRODUCIBILITY OF RESULTS;

EID: 33750054125     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2006.08.007     Document Type: Article

References (16)

1. Bookstein F.L. Principal warps: thin-plate splines and the decomposition of deformations. IEEE Trans. Pattern Anal. Mach. Intell. 11 (1989) 567-585
2. Cootes T.F., Hill A., Taylor C.J., and Haslam J. Use of active shape models for locating structures in medical images. Image Vis. Comput. 12 (1994) 355-365
3. Davatzikos C., Tao X., and Shen D.G. Hierarchical active shape models using the wavelet transform. IEEE Trans. Med. Imag. 22 (2003) 414-423
4. Davatzikos C., Tao X., and Shen D. Applications of Wavelets in Morphometric Analysis of Medical Images, presented at SPIE Wavelets X, San Diego, CA (2003)
5. Gelge M., Kilmer M., and Miller E. Wavelet domain image restoration with adaptive edge-preserving regularization. IEEE TMI 6 (2000) 721-741
6. Geman S., and Geman D. Stochastic relaxation, Gibbs distributions, and Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. PAMI-6 (1984) 721-741
7. Karacali B., and Davatzikos C. Estimating topology preserving and smooth displacement fields. IEEE Trans. Med. Imag. 23 (2004) 868-880
8. Karacali B., and Davatzikos C. Simulation of tissue atrophy using a topology preserving transformation model. IEEE Trans. Med. Imag. 25 (2006) 649-652
9. Kristi Boesen S.F., Huang J., Germann J., Stern J., Louis Collins D., Evans A.C., and Rottenberg D.A. Inter-rater reproducibility of 3D cortical and subcortical landmark points. Presented at 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto, Canada, 2005 (2005)
10. Mallat S., and Wavelet A. Tour of Signal Processing (1998), Academic Press
11. Miller M., Banerjee A., Christensen G., Joshi S., Khaneja N., Grenander U., and Matejic L. Statistical methods in computational anatomy. Stat. Methods Med. Res. 6 (1997) 267-299
12. Resnick S.M., Goldszal A., Davatzikos C., Golski S., Kraut M.A., Metter E.J., Bryan R.N., and Zonderman A.B. One-year age changes in MRI brain volumes in older adults. Cereb. Cortex 10 (2000) 464-472
13. Resnick S.M., Pham D.L., Kraut M.A., Zonderman A.B., and Davatzikos C. Longitudinal magnetic resonance imaging studies of older adults: a shrinking brain. J. Neurosci. 23 (2003) 3295-3301
14. Shen D., and Davatzikos C. HAMMER: hierarchical attribute matching mechanism for elastic registration. IEEE Trans. Med. Imag. 21 (2002) 1421-1439
15. Shen D., and Ip H. Markov random field regularization models for adaptive binarization of nonuniform images. IEE Proc., Vis. Image Signal Process. 145 (1998) 322-332
16. Xue Z., Shen D., Karacali B., and Davatzikos C. Statistical representation and simulation of high-dimensional deformations: Application to synthesizing brain deformations. Presented at Medical Image Computing and Computer Assisted Intervention (MICCAI 2005), Palm Springs, California, USA (2005)