PROBER: Oligonucleotide FISH probe design software

Bioinformatics

Volumn 22, Issue 19, 2006, Pages 2437-2438

  Navin, Nicholas ^a,b   Grubor, Vladimir ^b   Hicks, Jim ^b   Leibu, Evan ^b   Thomas, Elizabeth ^a   Troge, Jennifer ^b   Riggs, Michael ^b   Lundin, Pär ^c   Månér, Susanne ^c   Sebat, Jonathan ^b   Zetterberg, Anders ^c   Wigler, Michael ^b  

^a WATSON SCHOOL OF BIOLOGICAL SCIENCES   (United States)

^b Simons Center for Quantitative Biology   (United States)

^c KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; OLIGONUCLEOTIDE;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BREAST CANCER; COMPUTER PROGRAM; DNA MICROARRAY; DNA PROBE; DNA SEQUENCE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE AMPLIFICATION; GENE DELETION; GENE LOCUS; HUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SIMULATION;

BACTERIA (MICROORGANISMS);

EID: 33750028062     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl273     Document Type: Article

References (7)

1. Borer,P.N. et al. (1974) Stability of ribonucleic acid double-stranded helices. J. Mol. Biol., 86, 843-853.
2. Dieffenbach,C.W. et al. (1995) General Concepts for PCR Primer Design, in PCR Primer, A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York, pp. 133-155.
3. Dowell,R.D. et al. (2001) The distributed annotation system. BMC Bioinformatics, 2, 7.
4. Lucito,R. et al. (2003) Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation. Genome Res., 10, 2291-2305.
5. Healy,J. et al. (2003) Annotating large genomes with exact word matches. Genome Res., 10, 2306-2315.
6. Rychlik,W. et al. (1990) Optimization of the annealing temperature for DNA amplification in vitro. Nucleic Acids Res., 18, 6409-6412.
7. Sebat,J. et al. (2004) Large-scale copy number polymorphism in the human genome. Science, 305, 525-528.