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Volumn 70, Issue 20, 2006, Pages 5075-5088

Molecular simulations of metal adsorption to bacterial surfaces

Author keywords

[No Author keywords available]

Indexed keywords

ADSORPTION; BACTERIUM; METAL; MOLECULAR ANALYSIS; SIMULATION;

EID: 33750024817     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2006.07.028     Document Type: Article
Times cited : (36)

References (57)
  • 2
    • 0344796204 scopus 로고
    • Ion-water interaction potentials derived from free energy perturbation simulations
    • Åqvist J. Ion-water interaction potentials derived from free energy perturbation simulations. J. Phys. Chem. 94 (1990) 8021-8024
    • (1990) J. Phys. Chem. , vol.94 , pp. 8021-8024
    • Åqvist, J.1
  • 3
    • 0024844303 scopus 로고
    • Linkage units in cell walls of gram-positive bacteria
    • Araki Y., and Ito E. Linkage units in cell walls of gram-positive bacteria. Crit. Rev. Microbiol. 17 (1989) 121-135
    • (1989) Crit. Rev. Microbiol. , vol.17 , pp. 121-135
    • Araki, Y.1    Ito, E.2
  • 5
    • 0035963778 scopus 로고    scopus 로고
    • Molecular dynamics study of the effect of surfactant on a biomembrane
    • Bandyophadhyay S., Shelley J.C., and Klein M.L. Molecular dynamics study of the effect of surfactant on a biomembrane. J. Phys. Chem. B 105 (2001) 5979-5986
    • (2001) J. Phys. Chem. B , vol.105 , pp. 5979-5986
    • Bandyophadhyay, S.1    Shelley, J.C.2    Klein, M.L.3
  • 6
    • 0032839616 scopus 로고    scopus 로고
    • Structures of gram-negative cell walls and their derived membrane vesicles
    • Beveridge T.J. Structures of gram-negative cell walls and their derived membrane vesicles. J. Bacteriol. 181 (1999) 4725-4733
    • (1999) J. Bacteriol. , vol.181 , pp. 4725-4733
    • Beveridge, T.J.1
  • 7
    • 0019846443 scopus 로고
    • Binding of metals to cell envelopes of Escherichia-coli-K-12
    • Beveridge T.J., and Koval S.F. Binding of metals to cell envelopes of Escherichia-coli-K-12. Appl. Environ. Microbiol. 42 (1981) 325-335
    • (1981) Appl. Environ. Microbiol. , vol.42 , pp. 325-335
    • Beveridge, T.J.1    Koval, S.F.2
  • 8
    • 0017190773 scopus 로고
    • Uptake and retention of metals by cell walls of Bacillus subtilis
    • Beveridge T.J., and Murray R.G.E. Uptake and retention of metals by cell walls of Bacillus subtilis. J. Bacteriol. 127 (1976) 1502-1518
    • (1976) J. Bacteriol. , vol.127 , pp. 1502-1518
    • Beveridge, T.J.1    Murray, R.G.E.2
  • 9
    • 0018830034 scopus 로고
    • Sites of metal deposition in the cell wall of Bacillus subtilis
    • Beveridge T.J., and Murray R.G.E. Sites of metal deposition in the cell wall of Bacillus subtilis. J. Bacteriol. 141 (1980) 876-887
    • (1980) J. Bacteriol. , vol.141 , pp. 876-887
    • Beveridge, T.J.1    Murray, R.G.E.2
  • 10
    • 17644407710 scopus 로고    scopus 로고
    • The impact of ionic strength on the adsorption of protons, Pb, Cd, and Sr onto the surfaces of Gram negative bacteria: testing non-electrostatic, diffuse, and triple-layer models
    • Borrok D.M., and Fein J.B. The impact of ionic strength on the adsorption of protons, Pb, Cd, and Sr onto the surfaces of Gram negative bacteria: testing non-electrostatic, diffuse, and triple-layer models. J. Colloid Interface Sci. 286 (2005) 110-126
    • (2005) J. Colloid Interface Sci. , vol.286 , pp. 110-126
    • Borrok, D.M.1    Fein, J.B.2
  • 11
    • 3042562226 scopus 로고    scopus 로고
    • Proton and Cd sorption onto natural bacteria consortia: testing universal adsorption behavior
    • Borrok D., Fein J.B., and Kulpa C.F. Proton and Cd sorption onto natural bacteria consortia: testing universal adsorption behavior. Geochim. Cosmochim. Acta 68 (2004) 3231-3238
    • (2004) Geochim. Cosmochim. Acta , vol.68 , pp. 3231-3238
    • Borrok, D.1    Fein, J.B.2    Kulpa, C.F.3
  • 12
    • 0142187604 scopus 로고    scopus 로고
    • Adsorption of cadmium to Bacillus subtilis bacterial cell walls: a pH-dependent X-ray adsorption fine structure spectroscopy study
    • Boyanov M.I., Kelly S.D., Kemner K.M., Bunker B.A., Fein J.B., and Fowle D.A. Adsorption of cadmium to Bacillus subtilis bacterial cell walls: a pH-dependent X-ray adsorption fine structure spectroscopy study. Geochim. Cosmochim. Acta 67 (2003) 3299-3311
    • (2003) Geochim. Cosmochim. Acta , vol.67 , pp. 3299-3311
    • Boyanov, M.I.1    Kelly, S.D.2    Kemner, K.M.3    Bunker, B.A.4    Fein, J.B.5    Fowle, D.A.6
  • 13
    • 0141972573 scopus 로고    scopus 로고
    • Mechanism of Pb adsorption to fatty acid Langmuir monolayers studied by X-ray adsorption fine structure spectroscopy
    • Boyanov M.I., Kmetko J., Shibata T., Datta A., Dutta P., and Bunker B.A. Mechanism of Pb adsorption to fatty acid Langmuir monolayers studied by X-ray adsorption fine structure spectroscopy. J. Phys. Chem. B 107 (2003) 9780-9788
    • (2003) J. Phys. Chem. B , vol.107 , pp. 9780-9788
    • Boyanov, M.I.1    Kmetko, J.2    Shibata, T.3    Datta, A.4    Dutta, P.5    Bunker, B.A.6
  • 14
  • 15
    • 0041495708 scopus 로고
    • On the structures of cadmium sulfate complexes in aqueous solutions
    • Caminiti R., and Johansson G. On the structures of cadmium sulfate complexes in aqueous solutions. Acta Chem. Scand. Ser. A 35 (1981) 373-381
    • (1981) Acta Chem. Scand. Ser. A , vol.35 , pp. 373-381
    • Caminiti, R.1    Johansson, G.2
  • 16
    • 0142219523 scopus 로고
    • Investigation on the structure of cadmium nitrate aqueous solutions by X-ray diffraction and Raman Spectroscopy
    • Caminiti R., Cucca P., and Radnai T. Investigation on the structure of cadmium nitrate aqueous solutions by X-ray diffraction and Raman Spectroscopy. J. Phys. Chem. 88 (1984) 2382-2386
    • (1984) J. Phys. Chem. , vol.88 , pp. 2382-2386
    • Caminiti, R.1    Cucca, P.2    Radnai, T.3
  • 17
    • 0033572773 scopus 로고    scopus 로고
    • Characterizing heterogeneous bacterial surface functional groups using discrete affinity spectra for proton binding
    • Cox J.S., Smith D.S., Warren L.A., and Ferris F.G. Characterizing heterogeneous bacterial surface functional groups using discrete affinity spectra for proton binding. Environ. Sci. Technol. 33 (1999) 4515-4521
    • (1999) Environ. Sci. Technol. , vol.33 , pp. 4515-4521
    • Cox, J.S.1    Smith, D.S.2    Warren, L.A.3    Ferris, F.G.4
  • 19
    • 0023769808 scopus 로고
    • Structure and energetics of ligand-binding to proteins: Escherichia coli dihydrofolate reductase trimethoprim, a drug-receptor system
    • Dauber-Osguthorpe P., Roberts V.A., Osguthorpe D.J., Wolff J., Genest M., and Hagler A.T. Structure and energetics of ligand-binding to proteins: Escherichia coli dihydrofolate reductase trimethoprim, a drug-receptor system. Proteins 4 (1988) 31-47
    • (1988) Proteins , vol.4 , pp. 31-47
    • Dauber-Osguthorpe, P.1    Roberts, V.A.2    Osguthorpe, D.J.3    Wolff, J.4    Genest, M.5    Hagler, A.T.6
  • 20
    • 34447260582 scopus 로고
    • An all-electron numerical method for solving the local density functional for polyatomic molecules
    • Delley B. An all-electron numerical method for solving the local density functional for polyatomic molecules. J. Chem. Phys. 92 (1990) 508-517
    • (1990) J. Chem. Phys. , vol.92 , pp. 508-517
    • Delley, B.1
  • 21
    • 0034319689 scopus 로고    scopus 로고
    • 3 approach
    • 3 approach. J. Chem. Phys. 113 (2000) 7756-7764
    • (2000) J. Chem. Phys. , vol.113 , pp. 7756-7764
    • Delley, B.1
  • 22
    • 0014443051 scopus 로고
    • Control of teichoic acid and teichuronic acid biosynthesis in chemostat cultures of Bacillus subtilis var. niger
    • Elwood D.C., and Tempest D.W. Control of teichoic acid and teichuronic acid biosynthesis in chemostat cultures of Bacillus subtilis var. niger. Biochem. J. 111 (1969) 1-5
    • (1969) Biochem. J. , vol.111 , pp. 1-5
    • Elwood, D.C.1    Tempest, D.W.2
  • 24
    • 0033827708 scopus 로고    scopus 로고
    • Quantifying the effects of bacteria on adsorption reactions in water-rock systems
    • Fein J.B. Quantifying the effects of bacteria on adsorption reactions in water-rock systems. Chem. Geol. 169 (2000) 265-280
    • (2000) Chem. Geol. , vol.169 , pp. 265-280
    • Fein, J.B.1
  • 25
    • 0031418953 scopus 로고    scopus 로고
    • A chemical equilibrium model for metal adsorption onto bacterial surfaces
    • Fein J.B., Daughney C.J., Yee N., and Davis T.A. A chemical equilibrium model for metal adsorption onto bacterial surfaces. Geochim. Cosmochim. Acta 61 (1997) 3319-3328
    • (1997) Geochim. Cosmochim. Acta , vol.61 , pp. 3319-3328
    • Fein, J.B.1    Daughney, C.J.2    Yee, N.3    Davis, T.A.4
  • 26
    • 14844303559 scopus 로고    scopus 로고
    • Potentiometric titrations of Bacillus subtilis cells to low pH and a comparison of modeling approaches
    • Fein J.B., Boily J.F., Yee N., Gorman-Lewis D., and Turner B.F. Potentiometric titrations of Bacillus subtilis cells to low pH and a comparison of modeling approaches. Geochim. Cosmochim. Acta 69 (2005) 1123-1132
    • (2005) Geochim. Cosmochim. Acta , vol.69 , pp. 1123-1132
    • Fein, J.B.1    Boily, J.F.2    Yee, N.3    Gorman-Lewis, D.4    Turner, B.F.5
  • 27
    • 0033382213 scopus 로고    scopus 로고
    • Competitive adsorption of metal cations onto two gram positive bacteria: testing the chemical equilibrium model
    • Fowle D.A., and Fein J.B. Competitive adsorption of metal cations onto two gram positive bacteria: testing the chemical equilibrium model. Geochim. Cosmochim. Acta 63 (1999) 3059-3067
    • (1999) Geochim. Cosmochim. Acta , vol.63 , pp. 3059-3067
    • Fowle, D.A.1    Fein, J.B.2
  • 30
    • 1542581671 scopus 로고
    • Stéréochimie des eléments comportant des paires non liées: Ge(II), As(III), Se(IV), Br(V), Sn(II), Sb(III), Te(IV), I(V), Xe(VI), Tl(I), Pb(II), et Bi(III) (oxydes, fluorures et oxyfluorures)
    • Galy J., Meunier G., Andersson S., and Åström A. Stéréochimie des eléments comportant des paires non liées: Ge(II), As(III), Se(IV), Br(V), Sn(II), Sb(III), Te(IV), I(V), Xe(VI), Tl(I), Pb(II), et Bi(III) (oxydes, fluorures et oxyfluorures). J. Solid State Chem. 13 (1975) 142-159
    • (1975) J. Solid State Chem. , vol.13 , pp. 142-159
    • Galy, J.1    Meunier, G.2    Andersson, S.3    Åström, A.4
  • 31
    • 0028288896 scopus 로고
    • Structural differentiation of the Bacillus subtilis 168 cell wall
    • Graham L.L., and Beveridge T.J. Structural differentiation of the Bacillus subtilis 168 cell wall. J. Bacteriol. 176 (1994) 1413-1421
    • (1994) J. Bacteriol. , vol.176 , pp. 1413-1421
    • Graham, L.L.1    Beveridge, T.J.2
  • 32
    • 0001538909 scopus 로고
    • Canonical dynamics: equilibrium phase space distributions
    • Hoover W.G. Canonical dynamics: equilibrium phase space distributions. Phys. Rev. A 31 (1985) 1695-1697
    • (1985) Phys. Rev. A , vol.31 , pp. 1695-1697
    • Hoover, W.G.1
  • 33
    • 11144226382 scopus 로고    scopus 로고
    • Elucidations of functional groups on gram-positive and gram-negative bacterial surfaces using infrared spectroscopy
    • Jiang W., Saxena A., Song B., Ward B.B., Beveridge T.J., and Myneni S.C.B. Elucidations of functional groups on gram-positive and gram-negative bacterial surfaces using infrared spectroscopy. Langmuir 20 (2004) 11433-11442
    • (2004) Langmuir , vol.20 , pp. 11433-11442
    • Jiang, W.1    Saxena, A.2    Song, B.3    Ward, B.B.4    Beveridge, T.J.5    Myneni, S.C.B.6
  • 34
    • 0026751904 scopus 로고
    • Molecular modeling of the three-dimensional structure and conformational flexibility of bacterial lipopolysaccharide
    • Kastowsky M., Gutberlet T., and Bradaczek H. Molecular modeling of the three-dimensional structure and conformational flexibility of bacterial lipopolysaccharide. J. Bacteriol. 174 (1992) 4798-4806
    • (1992) J. Bacteriol. , vol.174 , pp. 4798-4806
    • Kastowsky, M.1    Gutberlet, T.2    Bradaczek, H.3
  • 35
    • 0035294591 scopus 로고    scopus 로고
    • XAFS determination of the bacterial cell wall functional groups responsible for complexation of Cd and U as a function of pH
    • Kelly S.D., Boyanov M.I., Bunker B.A., Fein J.B., Fowle D.A., Yee N., and Kemner K.M. XAFS determination of the bacterial cell wall functional groups responsible for complexation of Cd and U as a function of pH. J. Synchrotron Radiat. 8 (2001) 946-948
    • (2001) J. Synchrotron Radiat. , vol.8 , pp. 946-948
    • Kelly, S.D.1    Boyanov, M.I.2    Bunker, B.A.3    Fein, J.B.4    Fowle, D.A.5    Yee, N.6    Kemner, K.M.7
  • 36
    • 0033615325 scopus 로고    scopus 로고
    • Dynamics of the lipopolysaccharide assembly on the surface of Escherichia coli
    • Kotra L.P., Golemi D., Amro N.A., Liu G.Y., and Mobashery S. Dynamics of the lipopolysaccharide assembly on the surface of Escherichia coli. J. Chem. 38 (1999) 8707-8711
    • (1999) J. Chem. , vol.38 , pp. 8707-8711
    • Kotra, L.P.1    Golemi, D.2    Amro, N.A.3    Liu, G.Y.4    Mobashery, S.5
  • 37
    • 0034907678 scopus 로고    scopus 로고
    • Computer simulation of the rough lipopolysaccharide membrane of Pseudomonas aeruginosa
    • Lins R.D., and Straatsma T.P. Computer simulation of the rough lipopolysaccharide membrane of Pseudomonas aeruginosa. Biophys. J. 81 (2001) 1037-1046
    • (2001) Biophys. J. , vol.81 , pp. 1037-1046
    • Lins, R.D.1    Straatsma, T.P.2
  • 38
    • 0347777541 scopus 로고
    • Ionic radii in aqueous solutions
    • Marcus Y. Ionic radii in aqueous solutions. Chem. Rev. 88 (1988) 1475-1498
    • (1988) Chem. Rev. , vol.88 , pp. 1475-1498
    • Marcus, Y.1
  • 39
    • 0035504005 scopus 로고    scopus 로고
    • Chemical equilibrium modeling: techniques for the analysis of high-resolution bacterial metal sorption data
    • Martinez R.E., and Ferris F.G. Chemical equilibrium modeling: techniques for the analysis of high-resolution bacterial metal sorption data. J. Colloid Interface Sci. 243 (2001) 73-80
    • (2001) J. Colloid Interface Sci. , vol.243 , pp. 73-80
    • Martinez, R.E.1    Ferris, F.G.2
  • 41
    • 0032969566 scopus 로고    scopus 로고
    • Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope
    • Navarre W.W., and Schneewind O. Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope. Microbiol. Mol. Biol. Rev. 63 (1999) 174-229
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 174-229
    • Navarre, W.W.1    Schneewind, O.2
  • 42
    • 0037399586 scopus 로고    scopus 로고
    • Comparison of the acid-base behaviour and metal adsorption characteristics of a gram-negative bacterium and other strains
    • Ngwenya B.T., Sutherland I.W., and Kennedy L. Comparison of the acid-base behaviour and metal adsorption characteristics of a gram-negative bacterium and other strains. Appl. Geochem. 18 (2003) 527-538
    • (2003) Appl. Geochem. , vol.18 , pp. 527-538
    • Ngwenya, B.T.1    Sutherland, I.W.2    Kennedy, L.3
  • 44
    • 0000783954 scopus 로고
    • X-ray diffraction studies of aqueous solutions of cadmium perchorlate and sodium tetraiodocadmate
    • Ohtaki H., Maeda M., and Ito S. X-ray diffraction studies of aqueous solutions of cadmium perchorlate and sodium tetraiodocadmate. Bull. Chem. Soc. Jpn 47 (1974) 2217-2221
    • (1974) Bull. Chem. Soc. Jpn , vol.47 , pp. 2217-2221
    • Ohtaki, H.1    Maeda, M.2    Ito, S.3
  • 45
    • 0142025560 scopus 로고
    • Structure and dynamics of hydrated ions
    • Ohtaki H., and Radnai T. Structure and dynamics of hydrated ions. Chem. Rev. 93 (1993) 1157-1204
    • (1993) Chem. Rev. , vol.93 , pp. 1157-1204
    • Ohtaki, H.1    Radnai, T.2
  • 46
    • 0030217540 scopus 로고    scopus 로고
    • Direct modeling of EXAFS spectra from molecular dynamics simulations
    • Palmer B.J., Pfund D.M., and Fulton J.L. Direct modeling of EXAFS spectra from molecular dynamics simulations. Phys. Chem. 100 (1996) 13393-13398
    • (1996) Phys. Chem. , vol.100 , pp. 13393-13398
    • Palmer, B.J.1    Pfund, D.M.2    Fulton, J.L.3
  • 47
    • 0019707626 scopus 로고
    • Polymorphic transitions in single crystals: a new molecular dynamics method
    • Parrinello M., and Rahman A. Polymorphic transitions in single crystals: a new molecular dynamics method. Appl. Phys. 52 (1981) 7182-7190
    • (1981) Appl. Phys. , vol.52 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 48
    • 33645898818 scopus 로고
    • Accurate and simple analytic representation of the electron-gas correlation energy
    • Perdew J.P., and Wang Y. Accurate and simple analytic representation of the electron-gas correlation energy. Phys. Rev. B: Condensed Matter 45 (1992) 13244-13249
    • (1992) Phys. Rev. B: Condensed Matter , vol.45 , pp. 13244-13249
    • Perdew, J.P.1    Wang, Y.2
  • 52
    • 0037339491 scopus 로고    scopus 로고
    • Molecular basis for microbial adhesion to geochemical surfaces: computer simulation of Pseudomonas aeruginosa adhesion to goethite
    • Shroll R.M., and Straatsma T.P. Molecular basis for microbial adhesion to geochemical surfaces: computer simulation of Pseudomonas aeruginosa adhesion to goethite. Biophys. J. 84 (2003) 1765-1772
    • (2003) Biophys. J. , vol.84 , pp. 1765-1772
    • Shroll, R.M.1    Straatsma, T.P.2
  • 54
    • 0442300680 scopus 로고
    • Cohesion of ionic solids in the Born model
    • Tosi M.P. Cohesion of ionic solids in the Born model. Solid State Phys. 131 (1964) 533-545
    • (1964) Solid State Phys. , vol.131 , pp. 533-545
    • Tosi, M.P.1
  • 55
    • 0029882891 scopus 로고    scopus 로고
    • An NMR spectroscopy and molecular mechanics study of the molecular basis for the supramolecular structure of lipopolysaccharides
    • Wang Y., and Hollingsworth R.I. An NMR spectroscopy and molecular mechanics study of the molecular basis for the supramolecular structure of lipopolysaccharides. Biochemistry 35 (1996) 5647-5654
    • (1996) Biochemistry , vol.35 , pp. 5647-5654
    • Wang, Y.1    Hollingsworth, R.I.2
  • 56
    • 0030657614 scopus 로고    scopus 로고
    • 2+ binding sites in soil humic substances using X-ray adsorption spectroscopy
    • 2+ binding sites in soil humic substances using X-ray adsorption spectroscopy. Geochim. Cosmochim. Acta 61 (1997) 2211-2221
    • (1997) Geochim. Cosmochim. Acta , vol.61 , pp. 2211-2221
    • Xia, K.1    Bleam, W.2    Hemke, P.A.3
  • 57
    • 0034896382 scopus 로고    scopus 로고
    • Cd adsorption onto bacterial surfaces: a universal adsorption edge?
    • Yee N., and Fein J.B. Cd adsorption onto bacterial surfaces: a universal adsorption edge?. Geochim. Cosmochim. Acta 65 (2001) 2037-2042
    • (2001) Geochim. Cosmochim. Acta , vol.65 , pp. 2037-2042
    • Yee, N.1    Fein, J.B.2


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