Flavobacterium croceum sp. nov., isolated from activated sludge

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 10, 2006, Pages 2443-2447

  Park, Minjeong ^a   Lu, Shipeng ^a   Ryu, Seung Hyun ^a   Chung, Bok Sil ^a   Park, Woojun ^b   Kim, Chang Jin ^c   Jeon, Che Ok ^a  

^a Gyeongsang National University   (South Korea)

^b Korea University   (South Korea)

^c Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; CYTOSINE; FATTY ACID; GENOMIC DNA; GUANOSINE; LIPID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHORUS; QUINONE DERIVATIVE; RNA 16S;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; FLAVOBACTERIUM; FLAVOBACTERIUM CROCEUM; GRAM NEGATIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SEQUENCING BATCH REACTOR;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIOREACTORS; DNA, BACTERIAL; DNA, RIBOSOMAL; FLAVOBACTERIUM; GENES, RRNA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHOSPHORUS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE;

BACTERIA (MICROORGANISMS); FLAVOBACTERIUM; NEGIBACTERIA;

EID: 33749989792     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64436-0     Document Type: Article

References (28)

1. Aslam, Z., Im, W. T., Kim, M. K. & Lee, S. T. (2005). Flavobacterium granuli sp. nov., isolated from granules used in a wastewater treatment plant. Int J Syst Evol Microbiol 55, 747-751.
2. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
3. Bernardet, J. F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
4. Cole, J. R., Chai, B., Marsh, T. L. & 8 other authors (2003). The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442-443.
5. Felsenstein, J. (2002). PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
6. Gerhardt, P., Murray, R. G. M., Wood, W. A. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt. Washington, DC: American Society for Microbiology.
7. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
8. 2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. Int J Syst Evol Microbiol 55, 1255-1265.
9. Humphry, D. R., George, A., Black, G. W. & Cummings, S. P. (2001). Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica. Int J Syst Evol Microbiol 51, 1235-1243.
10. Jeon, C. O. & Park, J. M. (2000). Enhanced biological phosphorus removal in a sequencing batch reactor supplied with glucose as a sole carbon source. Water Res 34, 3470-3480.
11. Jeon, C. O., Lee, D. S. & Park, J. M. (2003). Microbial communities in activated sludge performing enhanced biological phosphorus removal in a sequencing batch reactor. Water Res 37, 2195-2205.
12. Jeon, C. O., Lim, J. M., Lee, J. M., Xu, L. H., Jiang, C. L. & Kim, C. J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 743-746.
13. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
14. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-208.
15. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester, UK: Wiley.
16. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
17. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
18. McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov., and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 1055-1063.
19. Mino, T., Arun, V., Suzuki, Y. T. & Matsuo, T. (1987). Effect of phosphorus accumulation on acetate metabolism in the biological phosphorus removal process. In Biological Phosphate Removal from Wastewaters, pp. 27-38. Edited by R. Ramadori. Oxford, UK: Pergamon Press.
20. Tamaki, H., Hanada, S., Kamagata, Y., Nakamura, K., Nomura, N., Nakano, K. & Matsumura, M. (2003). Flavobacterium limicola sp. nov., a psychrophilic, organic-polymer-degrading bacterium isolated from freshwater sediments. Int J Syst Evol Microbiol 53, 519-526.
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
23. Van Trappen, S., Mergaert, J., Van Eygen, S., Dawyndt, P., Cnockaert, M. C. & Swings, J. (2002). Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes. Syst Appl Microbiol 25, 603-610.
24. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Flavobacterium degerlachei sp. nov., Flavobacterium frigoris sp. nov. and Flavobacterium micromati sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 85-92.
25. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2005). Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 55, 769-772.
26. Wang, Z.-W., Liu, Y.-H., Dai, X., Wang, B.-J., Jiang, C.-Y. & Liu, S.-J. (2006). Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment. Int J Syst Evol Microbiol 56, 439-442.
27. Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2006). Flavobacterium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 997-1000.
28. Zhu, F., Wang, S. & Zhou, P. (2003). Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier. Int J Syst Evol Microbiol 53, 853-857.