IndexToolkit: An open source toolbox to index protein databases for high-throughput proteomics

Bioinformatics

Volumn 22, Issue 20, 2006, Pages 2572-2573

  Li, Dequan ^a,b   Gao, Wen ^a,b   Ling, Charles X ^c   Wang, Xiaobiao ^a,b   Sun, Ruixiang ^a   He, Simin ^a  

^a INSTITUTE OF COMPUTING TECHNOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c UNIVERSITY OF WESTERN ONTARIO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; HIGH THROUGHPUT SCREENING; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEOMICS;

EID: 33749843580     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl410     Document Type: Article

References (6)

1. Aebersold,R. and Mann,M. (2003) Mass spectrometry-based proteomics. Nature, 422, 198-207.
2. Craig,R. and Beavis,R.C. (2004) TANDEM: Matching proteins with tandem mass spectra. Bioinformatics, 20, 1466-1467.
3. Kersey,P.J. et al. (2004) The International Protein Index: An integrated database for proteomics experiments. Proteomics, 4, 1985-1988.
4. Li,D. et al. (2005) pFind: A novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry. Bioinformatics, 21, 3049-3050.
5. Martens,L. et al. (2005) DBToolkit: Processing protein databases for peptide-centric proteomics. Bioinformatics, 21, 3584-3585.
6. Tang,W.H. et al. (2005) Discovering known and unanticipated protein modifications using MS/MS database searching. Anal. Chem., 77, 3931-3946.