메뉴 건너뛰기




Volumn 24, Issue 3, 2006, Pages 380-404

A large scale, corpus-based approach for automatically disambiguating biomedical abbreviations

Author keywords

Data mining; Information retrieval; Machine learning; Word sense disambiguation

Indexed keywords

ACETYL TRANSFERASE; BIOMEDICAL ABBREVIATIONS; INFORMATION EXTRACTION; WORD SENSE DISAMBIGUATION;

EID: 33749588452     PISSN: 10468188     EISSN: 10468188     Source Type: Journal    
DOI: 10.1145/1165774.1165778     Document Type: Article
Times cited : (28)

References (51)
  • 1
    • 33749620782 scopus 로고    scopus 로고
    • A simple and robust abbreviation dictionary
    • H. P. Laboratories
    • ADAR, E. 2002. A simple and robust abbreviation dictionary. Tech. rep., H. P. Laboratories.
    • (2002) Tech. Rep.
    • Adar, E.1
  • 2
    • 0000481188 scopus 로고
    • An empirical distribution function for sampling with incomplete information
    • AYEH, M., BRUNK, H. D., EWING, G. M., REID, W. T., AND SILVEHMAN, E. 1954. An empirical distribution function for sampling with incomplete information. Ann. Meth. Statis. 26, 641-647.
    • (1954) Ann. Meth. Statis. , vol.26 , pp. 641-647
    • Ayeh, M.1    Brunk, H.D.2    Ewing, G.M.3    Reid, W.T.4    Silvehman, E.5
  • 5
    • 33749630135 scopus 로고
    • Transformation-based error-driven learning and natural language processing: A case study in part of speech tagging
    • BRILL, E. 1995. Transformation-based error-driven learning and natural language processing: A case study in part of speech tagging. In Proceedings of the Computational Linguistics.
    • (1995) Proceedings of the Computational Linguistics
    • Brill, E.1
  • 6
    • 33749605163 scopus 로고    scopus 로고
    • Creating an online dictionary of abbreviations from MEDLINE
    • To appear in
    • CHANG, J. T., SCHUTZE, H., AND ALTMAN, R. B. 2006. Creating an online dictionary of abbreviations from MEDLINE. To appear in JAMIA.
    • (2006) JAMIA
    • Chang, J.T.1    Schutze, H.2    Altman, R.B.3
  • 9
    • 0002589728 scopus 로고
    • Probability scoring for spelling correction
    • CHURCH, K. W. AND GALE, W. A. 1991. Probability scoring for spelling correction. Statis. Comput. 1, 93-103.
    • (1991) Statis. Comput. , vol.1 , pp. 93-103
    • Church, K.W.1    Gale, W.A.2
  • 10
    • 84941301490 scopus 로고    scopus 로고
    • A new statistical parser based on bigram lexical dependencies
    • COLLINS, M. 1996. A new statistical parser based on bigram lexical dependencies. In Proceedings of the ACL Conference.
    • (1996) Proceedings of the ACL Conference
    • Collins, M.1
  • 12
    • 0032613913 scopus 로고    scopus 로고
    • Abbreviations for vertebrate virus species names
    • FAUQUET, C. M. AND PRINGLE, C. R. 1999. Abbreviations for vertebrate virus species names. Arch. Virol. 144, 1865-1880.
    • (1999) Arch. Virol. , vol.144 , pp. 1865-1880
    • Fauquet, C.M.1    Pringle, C.R.2
  • 13
    • 0032921104 scopus 로고    scopus 로고
    • The effect of abbreviations on MEDLINE searching
    • FEDERIUK, G. S. 1999. The effect of abbreviations on MEDLINE searching. Acad. Emerg. Med. 6, 292-296.
    • (1999) Acad. Emerg. Med. , vol.6 , pp. 292-296
    • Federiuk, G.S.1
  • 14
    • 0031633368 scopus 로고    scopus 로고
    • Toward information extraction: Identifying protein names from biological articles
    • FUKUDA, K., TAMURA, A., TSUNODA, T., AND TAKAGI, T. 1998. Toward information extraction: Identifying protein names from biological articles. Pac. Symp. Biocomput, 707-718.
    • (1998) Pac. Symp. Biocomput , pp. 707-718
    • Fukuda, K.1    Tamura, A.2    Tsunoda, T.3    Takagi, T.4
  • 15
    • 34248847962 scopus 로고
    • A method for disambiguating word senses in a large corpus
    • GALE, W., CHURCH, K., AND YAROWSKY, D. 1992. A method for disambiguating word senses in a large corpus. Comput. Humanities 26, 415-439.
    • (1992) Comput. Humanities , vol.26 , pp. 415-439
    • Gale, W.1    Church, K.2    Yarowsky, D.3
  • 17
    • 0035224502 scopus 로고    scopus 로고
    • Disambiguating proteins, genes, and RNA in text: A machine learning approach
    • HATZIVASSILOGLOU, V., DUBOUE. P. A., AND RZHETSKY, A. 2001. Disambiguating proteins, genes, and RNA in text: A machine learning approach. Bioinformatics 17, S97-106.
    • (2001) Bioinformatics , vol.17
    • Hatzivassiloglou, V.1    Duboue, P.A.2    Rzhetsky, A.3
  • 19
    • 0010248170 scopus 로고    scopus 로고
    • Extraction of useful terms from parenthetical experssion by using simple rules and statistical measures
    • Montreal, Canada
    • HISAMITSU, T. AND NIWA, Y. 1998. Extraction of useful terms from parenthetical experssion by using simple rules and statistical measures. In Proceedings of the CompuTerm98 Conference. Montreal, Canada.
    • (1998) Proceedings of the CompuTerm98 Conference
    • Hisamitsu, T.1    Niwa, Y.2
  • 20
    • 0027339437 scopus 로고
    • The UMLS project: Making the conceptual connection between users and the information they need
    • HUMPHREYS, B. L. AND LINDBERG, D. A. 1993. The UMLS project: Making the conceptual connection between users and the information they need. Bull. Med. Libr. Assoc. 81, 170-177.
    • (1993) Bull. Med. Libr. Assoc. , vol.81 , pp. 170-177
    • Humphreys, B.L.1    Lindberg, D.A.2
  • 21
    • 0002553443 scopus 로고
    • Interpolated estimation of Markov source parameters from sparse data
    • JELINEK, F. AND MERCER, R. 1980. Interpolated estimation of Markov source parameters from sparse data. In Proceedings of the PWPEP Conference.
    • (1980) Proceedings of the PWPEP Conference
    • Jelinek, F.1    Mercer, R.2
  • 23
    • 0025636201 scopus 로고
    • Effect of dipyridamole on inosine triphosphate pyrophosphohydrolase activity and inosine triphosphate content in fresh human erythrocytes incubated with adenosine
    • KOPFF, M., KLEM, J., ZAKRZEWSKA, I., AND STRZELCZYK, M. 1990. Effect of dipyridamole on inosine triphosphate pyrophosphohydrolase activity and inosine triphosphate content in fresh human erythrocytes incubated with adenosine. Acta. Biochim. Pol. 37, 227-232.
    • (1990) Acta. Biochim. Pol. , vol.37 , pp. 227-232
    • Kopff, M.1    Klem, J.2    Zakrzewska, I.3    Strzelczyk, M.4
  • 26
    • 0038552086 scopus 로고
    • Automatic sense disambiguation: How to tel a pine cone from an ice cream cone
    • LESK, M. 1986. Automatic sense disambiguation: How to tel a pine cone from an ice cream cone. In Proceedings of the SIGDOC Conference.
    • (1986) Proceedings of the SIGDOC Conference
    • Lesk, M.1
  • 27
    • 0011077440 scopus 로고
    • Note on the general case of the Bayes-Laplace formula for inductive or a priori probabilities
    • LIDSTONE, G. 1992. Note on the general case of the Bayes-Laplace formula for inductive or a priori probabilities. Trans. Faculty Actuaries 8, 182-192.
    • (1992) Trans. Faculty Actuaries , vol.8 , pp. 182-192
    • Lidstone, G.1
  • 28
    • 0035564886 scopus 로고    scopus 로고
    • Disambiguating ambiguous biomedical terms in biomedical narrative text: An unsupervised method
    • LIU. H., LUSSIER. Y. A., AND FRIEDMAN, C. 2001. Disambiguating ambiguous biomedical terms in biomedical narrative text: An unsupervised method. J. Biomed. Inf. 34, 249-261.
    • (2001) J. Biomed. Inf. , vol.34 , pp. 249-261
    • Liu, H.1    Lussier, Y.A.2    Friedman, C.3
  • 29
    • 0032445533 scopus 로고    scopus 로고
    • The nature of lexical knowledge
    • McCRAY, A. T. 1998. The nature of lexical knowledge. Methods Inf. Med. 37, 353-360.
    • (1998) Methods Inf. Med. , vol.37 , pp. 353-360
    • McCray, A.T.1
  • 31
    • 0035230208 scopus 로고    scopus 로고
    • Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar
    • PARK, J. C., KIM, H. S., AND KIM, J. J. 2001. Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar. Pac. Symp. Biocomput, 396-407.
    • (2001) Pac. Symp. Biocomput , pp. 396-407
    • Park, J.C.1    Kim, H.S.2    Kim, J.J.3
  • 33
    • 84948481845 scopus 로고
    • An algorithm for suffix stripping
    • PORTER, M. F. 1980. An algorithm for suffix stripping. Program. 14, 130-137.
    • (1980) Program , vol.14 , pp. 130-137
    • Porter, M.F.1
  • 36
    • 0032420198 scopus 로고    scopus 로고
    • BioABACUS: A database of abbreviations and acronyms in biotechnology and computer science
    • RIMER, M. AND O'CONNELL, M. 1998. BioABACUS: A database of abbreviations and acronyms in biotechnology and computer science. Bioinformatics 14, 888-889.
    • (1998) Bioinformatics , vol.14 , pp. 888-889
    • Rimer, M.1    O'Connell, M.2
  • 37
    • 0347596961 scopus 로고    scopus 로고
    • Automatic word sense discrimination
    • SCHUETZE, H. 1998. Automatic word sense discrimination. Comput. Linguist. 24, 97-124.
    • (1998) Comput. Linguist. , vol.24 , pp. 97-124
    • Schuetze, H.1
  • 38
    • 0042141580 scopus 로고    scopus 로고
    • A simple algorithm for identifying abbreviation definitions in biomedical text
    • To appear in
    • SCHWARTZ, A. S. AND HEARST, M. A. 2002. A simple algorithm for identifying abbreviation definitions in biomedical text. To appear in Pac. Symp. Biocomput.
    • (2002) Pac. Symp. Biocomput.
    • Schwartz, A.S.1    Hearst, M.A.2
  • 40
    • 0033655017 scopus 로고    scopus 로고
    • Biobibliometrics: Information retrieval and visualization from co-occurrences of gene names in MEDLINE abstracts
    • STAPLEY, B. J. AND BENOIT, G. 2000. Biobibliometrics: Information retrieval and visualization from co-occurrences of gene names in MEDLINE abstracts. Pac. Symp. Biocomput, 529-540.
    • (2000) Pac. Symp. Biocomput , pp. 529-540
    • Stapley, B.J.1    Benoit, G.2
  • 41
    • 0032422208 scopus 로고    scopus 로고
    • Application of accelerated mass spectrometry (AMS) in DNA adduct quantification and identification
    • TURTELTAUB, K. W. AND DINGLEY, K. H. 1998. Application of accelerated mass spectrometry (AMS) in DNA adduct quantification and identification. Toxicol. Lett. 102-103, 435-439.
    • (1998) Toxicol. Lett. , vol.102-103 , pp. 435-439
    • Turteltaub, K.W.1    Dingley, K.H.2
  • 43
    • 0034575784 scopus 로고    scopus 로고
    • Boosting naïve Bayesian learning on a large subset of MEDLINE
    • WILBUR, W. J. 2000. Boosting naïve Bayesian learning on a large subset of MEDLINE. Proc. AMIA Symp. 918-922.
    • (2000) Proc. AMIA Symp. , pp. 918-922
    • Wilbur, W.J.1
  • 44
    • 0039560867 scopus 로고    scopus 로고
    • Flexible phrase based query handling algorithms
    • E. Aversa and C. Manley, eds. Washington, DC.
    • WILBUR, W. J. AND KIM, W. 2001. Flexible phrase based query handling algorithms. In Proceedings of the ASIST Annual Meeting, E. Aversa and C. Manley, eds. Washington, DC.
    • (2001) Proceedings of the ASIST Annual Meeting
    • Wilbur, W.J.1    Kim, W.2
  • 48
    • 0034062878 scopus 로고    scopus 로고
    • PNAD-CSS: A workbench for constructing a protein name abbreviation dictionary
    • YOSHIDA, M., PUKUDA, K., AND TAKAGI, T. 2000. PNAD-CSS: A workbench for constructing a protein name abbreviation dictionary. Bioinformatics 16, 169-175.
    • (2000) Bioinformatics , vol.16 , pp. 169-175
    • Yoshida, M.1    Pukuda, K.2    Takagi, T.3
  • 49
    • 1242349373 scopus 로고    scopus 로고
    • Extracting synonymous gene and protein terms from biological literature
    • YU, H. AND AGICHTEIN, E. 2003. Extracting synonymous gene and protein terms from biological literature. Bioinformatics 19, Suppl. 1, 1340-349.
    • (2003) Bioinformatics , vol.19 , Issue.1 SUPPL. , pp. 1340-1349
    • Yu, H.1    Agichtein, E.2
  • 50
    • 0036579940 scopus 로고    scopus 로고
    • Mapping abbreviations to full forms in biomedical articles
    • Yu, H., HRIPCBAK, G., AND FRIEDMAN, C. 2002. Mapping abbreviations to full forms in biomedical articles. J. Am. Med. Inform. Assoc. 9, 262-272.
    • (2002) J. Am. Med. Inform. Assoc. , vol.9 , pp. 262-272
    • Yu, H.1    Hripcbak, G.2    Friedman, C.3
  • 51
    • 0021266753 scopus 로고
    • Hemophilia and thrombocytopenia in a patient with impaired cellular immunity. A case report
    • ZEITLHUBER, U., HASCHKE, F., PUSPOK, R., LECHNER, K., KNAPP, W., AND IMBACH, P. 1984. Hemophilia and thrombocytopenia in a patient with impaired cellular immunity. A case report. Blut. 48, 393-395.
    • (1984) Blut. , vol.48 , pp. 393-395
    • Zeitlhuber, U.1    Haschke, F.2    Puspok, R.3    Lechner, K.4    Knapp, W.5    Imbach, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.