Comprehensive analysis of plant gene expression in soybean root nodules at different growth stages

Soil Science and Plant Nutrition

Volumn 51, Issue 4, 2005, Pages 535-547

  Kaewsuralikhit, Sirilak ^a   Yokoyama, Tadashi ^a   Kouchi, Hirochi ^b   Arima, Yasuhiro ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Growth stage; Macroarray; Plant gene expression; Root nodule; Soybean

Indexed keywords

GLYCINE MAX; LOTUS CORNICULATUS VAR. JAPONICUS;

EID: 33749351959     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1111/j.1747-0765.2005.tb00062.x     Document Type: Article

References (48)

1. Alesandrini F, Frendo P, Puppo A, and Héroart D 2003: Isolation of a molecular marker of soybean nodule senescence. Plant Physiol. Biochem., 41, 727-732
2. Asamizu E, Nagamura Y, Sato S, and Tabata S 2000: Generation of 7,137 non-redundant expressed sequence tags from a legume, Lotus japonicus. DNA Res., 7, 127-130
3. Asamizu E, Nagamura Y, Sato S, and Tabata S 2004: Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol. Biol., 54, 405-414
4. Blée E 2002: Impact of phyto-oxylipins in plant defense. Trends Plant Sci., 7, 315-321
5. Ceccatto VM, Gomes JE, Sarriés GA, Moon DH, and Tsai SM 1998: Effects of host plant origin on nodulin activities and nitrogen fixation in Phaseolus vulgaris L. Plant Soil, 204, 79-87
6. Charon C, Souas C, Crespi M, and Kondorosi A 1999: Alteration of enod40 expression modifies Medicago truncatula root nodule development induced by Sinorhizobium meliloti. Plant Cell, 11, 1953-1966
7. Colebatch G, Kloska S, Trevaskis B, Freund S, Altmann T, and Udvardi MK 2002: Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays. Mol. Plant-Microbe Interact., 15, 411-420
8. Crawford NM, Kahn ML, Leustek T, and Long SR 2000: Nitrogen and sulfur. In Biochemistry and Molecular Biology of Plants, Ed. B Buchanan, W Gruissem, and R Johnes, p. 786-849, American Society of Plant Physiologists, Rockville Maryland
9. Desprez T, Amselem J, Caboche M, and Höfte H 1998: Differential gene expression in Arabidopsis monitored using cDNA arrays. Plant J., 14, 643-652
10. Eisen MB, Spellman PT, Brown PO, and Botstein D 1998: Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 95, 14863-14868
11. Fabre F and Planchon C 2000: Nitrogen nutrition, yield and protein content in soybean. Plant Sci., 152, 51-58
12. FAO 2003: Integrated Plant Nutrition Systems. In World Agriculture Towards 2015/2030, An FAO Perspective, Ed. J Bruinsma, p. 305, Earthscan Publications, Ltd., London
13. Frueauf JB, Dolata M, Leykam JF, Lloyd EA, Gonzales M, Vanden BK, and Kieliszewski MJ 2000: Peptides isolated from cell walls of Medicago truncatula nodules and uninfected root. Phytochemistry, 55, 429-438
14. Garcia R and Hanway JJ 1976: Foliar fertilization of soybeans during the seed-filling period. Agron. J., 68, 653-657
15. Grechkin A 1998: Recent developments in biochemistry of the plant lipoxygenase pathway. Prog. Lipid Res., 37, 317-352
16. Herrada G, Puppo A, Moreau S, Day DA, and Rigaud J 1993: How is leghemoglobin involved in peribacteroid membrane degradation during nodule senescence? FEBS Lett., 326, 33-38
17. Hirsch AM, Bhuvaneswari TA, Torrey JG, and Bisseling T 1989: Early nodulin genes are induced in alfalfa root outgrowths elicited by auxin transport inhibitors. Proc. Natl. Acad. Sci. USA, 86, 1244-1248
18. Hong JC, Nagao RT, and Key JL 1989: Developmentally regulated expression of soybean proline-rich cell wall protein genes. Plant Cell, 1, 937-943
19. Kaiser BN, Finnegan PM, Tyerman SD, Whitehead LF, Bergersen FJ, Day DA, and Udvardi MK 1998: Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules. Science, 281, 1202-1206
20. Kardailsky IV and Brewin NJ 1996: Expression of cysteine protease genes in pea nodule development and senescence. Mol. Plant-Microbe Interact., 9, 689-695
21. Karlowski WM, Strozycki PM, and Legocki AB 2000: Characterization and expression analysis of the yellow lupin (Lupinus luteus L.) gene coding for nodule specific proline-rich protein. Acta Biochem. Pol., 47, 371-383
22. Kouchi H, Shimomura K, Hata S, Hirota A, Wu GJ, Kumagai H, Tajima S, Suganuma N, Suzuki T, Aoki T, Hayashi M, Yokoyama T, Ohyama T, Asamizu E, Kuwata C, Shibata D, and Tabata S 2004: Large-scale analysis of gene expression profiles during early stages of root nodule formation in model legume, Lotus japonicus. DNA Res., 11, 263-274
23. Lievens S, Goormachtig S, Herman S, and Holsters M 2002: Patterns of pectin methylesterase transcripts in developing stem nodules of Sesbania rostrata. Mol. Plant-Microbe Interact., 15, 164-168
24. Long SR 1996: Rhizobium symbiosis: Nod factors in perspective. Plant Cell, 8, 1885-1898
25. Mohammadi M and Karr AL 2003: Induced lipoxygenases in soybean root nodules. Plant Sci., 164, 471-479
26. Müller J, Wiemken A, and Boller T 2001: Redifferentiation of bacteria isolated from Lotus japonicus root nodules colonized by Rhizobium sp. NGR234. J. Exp. Bot., 52, 2181-2186
27. Munõz JA, Coronado C, Perez-Hormaeche J, Kondorosi A, Ratet P, and Palomares AJ 1998: MsPG3, a Medicago sativa polygalacturonase gene expressed during the alfalfa-Rhizobium meliloti interaction. Proc. Natl. Acad. Sci. USA, 95, 9687-9692
28. Naito Y, Fujie M, Usami S, Murooka Y, and Yamada T 2000: The involvement of a cysteine proteinase in the nodule development in Chinese milk vetch infected with Mesorhizobium huakuii subsp. rengei. Plant Physiol., 124, 1087-1096
29. Nap JP and Bisseling T 1990: Developmental biology of a plant-prokaryote symbiosis: The legume root nodule. Science, 250, 948-954
30. Nash DT and Schulman HM 1976: The absence of oxidized leghemoglobin in soybean root nodules during nodule development. Biochem. Biophys. Res. Commun., 68, 781-785
31. Newman T, De Bruijn FJ, and Green P et al. 1994: Genes galore: A summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol., 106, 1241-1255
32. O'Brian MR 1996: Heme synthesis in the rhizobium-legume symbiosis: A palette for bacterial and eukaryotic pigments. J. Bacteriol., 178, 2471-2478
33. Perlick AM and Puhler A 1993: A survey of transcripts expressed specifically in root nodules of broadbean (Vicia faba L.). Plant Mol. Biol., 22, 957-970
34. Pladys D and Vance CP 1993: Proteolysis during development and senescence of effective and plant gene-controlled ineffective alfalfa nodules. Plant Physiol., 103, 379-384
35. Purcell LC and King AC 1996: Drought and nitrogen source effects on nitrogen nutrition, seed growth, and yield in soybean. J. Plant Nutr., 19, 969-993
36. Rathbun EA, Naldrett MJ, and Brewin NJ 2002: Identification of a family of extensin-like glycoproteins in the lumen of rhizobium-induced infection threads in pea root nodules. Mol. Plant-Microbe Interact., 15, 350-359
37. Redmond JW, Batley M, Djordjevic MA, Innes RW, Kuempel PL, and Rolfe BG 1986: Flavones induce expression of nodulation genes in Rhizobium. Nature, 323, 632-635
38. Rolfe BG and Gresshoff PM 1988: Genetic analysis of legume nodule initiation. Annu. Rev. Plant Physiol. Mol. Biol., 39, 297-319
39. Salvemini F, Marini A, Riccio A, Patriarca EJ, and Chiurazzi M 2001: Functional characterization of an ammonium transporter gene from Lotus japonicus. Gene, 270, 237-243
40. Sambrook J and Russel D 2001: Molecular Cloning: A Laboratory Manual, 3rd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA
41. Schena M, Shalon D, Davis RW, and Brown PO 1995: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470
42. Schultze M and Kondorosi A 1998: Regulation of symbiotic root nodule development. Annu. Rev. Genet., 32, 33-57
43. Syverud TD, Walsh LM, Oplinger ES, and Kelling KA 1980: Foliar fertilization of soybeans (Glycine max L.). Commun. Soil Sci. Plant Anal., 11, 637-651
44. Tsuchida T and Arima Y 1993: Effect of soil molding on the growth and root nodule nitrogen fixation of Glycine max L. Jpn. J. Soil Sci. Plant Nutr., 64, 20-26
45. van Rhijn P and Vanderleyden J 1995: The Rhizobium-plant symbiosis. Microbiol. Rev., 59, 124-142
46. Verma DPS, Hu CA, and Zhang M 1992: Root nodule development: Origin, function and regulation of nodulin genes. Physiol. Plant, 85, 253-265
47. Wesley TL, Lamond RE, Martin VL, and Duncan SR 1998: Effects of late-season nitrogen fertilization on irrigated soybean yield and composition. J. Prod. Agric., 11, 331-336
48. Wilson RC, Long F, Maruoka EM, and Cooper J 1994: A new proline-rich early nodulin from Medicago truncatula is highly expressed in nodule meristematic cells. Plant Cell, 6, 1265-1275