Automatic protein function annotation through candidate ortholog clusters from incomplete genomes

2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts

Volumn , Issue , 2005, Pages 73-74

  Vashist, Akshay ^a   Kulikowski, Casimir ^a   Muchnik, Ilya ^a,b  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL METHODS; FUNCTION EVALUATION; GENETIC ENGINEERING; OPTIMIZATION; PLANTS (BOTANY);

LEAST SIMILAR SEQUENCE; PROTEIN FUNCTION; PROTEIN SEQUENCE; PROTEOMES;

PROTEINS;

EID: 33749063962     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CSBW.2005.27     Document Type: Conference Paper

References (4)

1. S. Altschul et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res, 25(17):3389-3402, 1997.
2. L. Koski and G. Golding. The closest blast hit is often not the nearest neighbor. J Mol Biol, 52:540-542, 2001.
3. R. Tatusov, E. Koonin, and D. Lipmann. A genomic perspective on protein families. Science, 278:631-637, 1997.
4. A. Vashist, C. Kulikowski, and I. Muchnik. Automatic screening for groups of orthologous genes in comparative genomics using multiple-component clustering. Technical Report 2004-33, DIMACS, 2004.