-
1
-
-
0022050647
-
2-terminal arm of phage λ repressor contributes energy and specificity to repressor binding and determines the effects of operator mutations
-
2-terminal arm of phage λ repressor contributes energy and specificity to repressor binding and determines the effects of operator mutations. Proc. Natl. Acad. Sci. U. S. A. 82 (1985) 2339-2343
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 2339-2343
-
-
Eliason, J.L.1
-
2
-
-
0024284648
-
Structure of the λ complex at 2.5 Å resolution: details of the repressor-operator interactions
-
Jordan S.R., and Pabo C.O. Structure of the λ complex at 2.5 Å resolution: details of the repressor-operator interactions. Science 242 (1988) 893-899
-
(1988)
Science
, vol.242
, pp. 893-899
-
-
Jordan, S.R.1
Pabo, C.O.2
-
3
-
-
0024997404
-
Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution
-
Otting G., et al. Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution. EMBO J. 9 (1990) 3085-3092
-
(1990)
EMBO J.
, vol.9
, pp. 3085-3092
-
-
Otting, G.1
-
4
-
-
0025188837
-
Crystal structure of an engrailed homeodomain-DNA complex at 2.8 Å resolution: a framework for understanding homeodomain-DNA interactions
-
Kissinger C.R., et al. Crystal structure of an engrailed homeodomain-DNA complex at 2.8 Å resolution: a framework for understanding homeodomain-DNA interactions. Cell 63 (1990) 579-590
-
(1990)
Cell
, vol.63
, pp. 579-590
-
-
Kissinger, C.R.1
-
5
-
-
0025865915
-
A thymus-specific member of the HMG protein family regulates the human T cell receptor Cα enhancer
-
Waterman M.L., et al. A thymus-specific member of the HMG protein family regulates the human T cell receptor Cα enhancer. Genes Dev. 5 (1991) 656-669
-
(1991)
Genes Dev.
, vol.5
, pp. 656-669
-
-
Waterman, M.L.1
-
6
-
-
0025364886
-
A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif
-
Sinclair A.H., et al. A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif. Nature 346 (1990) 240-244
-
(1990)
Nature
, vol.346
, pp. 240-244
-
-
Sinclair, A.H.1
-
7
-
-
0026704583
-
A high-mobility-group protein and its cDNAs from Drosophila melanogaster
-
Wagner C.R., et al. A high-mobility-group protein and its cDNAs from Drosophila melanogaster. Mol. Cell. Biol. 12 (1992) 1915-1923
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 1915-1923
-
-
Wagner, C.R.1
-
8
-
-
0027249031
-
dHMG-Z, a second HMG-1-related protein in Drosophila melanogaster
-
Ner S.S., et al. dHMG-Z, a second HMG-1-related protein in Drosophila melanogaster. Nucleic Acids Res. 21 (1993) 4369-4371
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4369-4371
-
-
Ner, S.S.1
-
9
-
-
0025239027
-
Duplicated NHP6 genes of Saccharomyces cerevisiae encode proteins homologous to bovine high mobility group protein 1
-
Kolodrubetz D., and Burgum A. Duplicated NHP6 genes of Saccharomyces cerevisiae encode proteins homologous to bovine high mobility group protein 1. J. Biol. Chem. 265 (1990) 3234-3239
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 3234-3239
-
-
Kolodrubetz, D.1
Burgum, A.2
-
10
-
-
0030000761
-
The DNA bend angle and binding affinity of an HMG box increased by the presence of short terminal arms
-
Lnenicek-Allen M., et al. The DNA bend angle and binding affinity of an HMG box increased by the presence of short terminal arms. Nucleic Acids Res. 24 (1996) 1047-1051
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1047-1051
-
-
Lnenicek-Allen, M.1
-
11
-
-
4644219557
-
DNA binding and bending by HMG boxes: energetic determinants of specificity
-
Dragan A.I., et al. DNA binding and bending by HMG boxes: energetic determinants of specificity. J. Mol. Biol. 343 (2004) 371-393
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 371-393
-
-
Dragan, A.I.1
-
12
-
-
0029131298
-
Structural basis for DNA bending by the architectural transcription factor LEF-1
-
Love J.J., et al. Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature 376 (1995) 791-795
-
(1995)
Nature
, vol.376
, pp. 791-795
-
-
Love, J.J.1
-
13
-
-
0034663978
-
Structural studies of the high mobility group globular domain and basic tail of HMG-D bound to disulfide cross-linked DNA
-
Dow L.K., et al. Structural studies of the high mobility group globular domain and basic tail of HMG-D bound to disulfide cross-linked DNA. Biochemistry 39 (2000) 9725-9736
-
(2000)
Biochemistry
, vol.39
, pp. 9725-9736
-
-
Dow, L.K.1
-
14
-
-
0036404246
-
The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding
-
Masse J.E., et al. The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding. J. Mol. Biol. 323 (2002) 263-284
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 263-284
-
-
Masse, J.E.1
-
15
-
-
0032190230
-
AT-hook motifs identified in a wide variety of DNA-binding proteins
-
Aravind L., and Landsman D. AT-hook motifs identified in a wide variety of DNA-binding proteins. Nucleic Acids Res. 26 (1998) 4413-4421
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4413-4421
-
-
Aravind, L.1
Landsman, D.2
-
16
-
-
0030764158
-
The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif
-
Huth J.R., et al. The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif. Nat. Struct. Biol. 4 (1997) 657-665
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 657-665
-
-
Huth, J.R.1
-
17
-
-
30144441074
-
Forces driving the binding of homeodomains to DNA
-
Dragan A.I., et al. Forces driving the binding of homeodomains to DNA. Biochemistry 45 (2006) 141-161
-
(2006)
Biochemistry
, vol.45
, pp. 141-161
-
-
Dragan, A.I.1
-
18
-
-
0042166066
-
DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution
-
Dragan A.I., et al. DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution. J. Mol. Biol. 331 (2003) 795-813
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 795-813
-
-
Dragan, A.I.1
-
19
-
-
0037459241
-
The energetics of specific binding of AT-hooks from HMGA1 to target DNA
-
Dragan A.I., et al. The energetics of specific binding of AT-hooks from HMGA1 to target DNA. J. Mol. Biol. 327 (2003) 393-411
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 393-411
-
-
Dragan, A.I.1
-
20
-
-
0026511652
-
Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding
-
Privalov P.L., and Makhatadze G.I. Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding. J. Mol. Biol. 224 (1992) 715-723
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 715-723
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
21
-
-
0001743558
-
Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending
-
Mirzabekov A.D., and Rich A. Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending. Proc. Natl. Acad. Sci. U. S. A. 76 (1979) 1118-1121
-
(1979)
Proc. Natl. Acad. Sci. U. S. A.
, vol.76
, pp. 1118-1121
-
-
Mirzabekov, A.D.1
Rich, A.2
-
22
-
-
0028597967
-
DNA bending by asymmetric phosphate neutralization
-
Strauss J.K., and Maher III L.J. DNA bending by asymmetric phosphate neutralization. Science 266 (1994) 1829-1834
-
(1994)
Science
, vol.266
, pp. 1829-1834
-
-
Strauss, J.K.1
Maher III, L.J.2
-
23
-
-
0024997404
-
Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution
-
Otting G., et al. Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution. EMBO J. 9 (1990) 3085-3092
-
(1990)
EMBO J.
, vol.9
, pp. 3085-3092
-
-
Otting, G.1
-
24
-
-
0030916275
-
Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity
-
Gruschus J.M., et al. Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity. Biochemistry 36 (1997) 5372-5380
-
(1997)
Biochemistry
, vol.36
, pp. 5372-5380
-
-
Gruschus, J.M.1
-
25
-
-
0031749528
-
A new DNA-binding motif in the Skn-1 binding domain-DNA complex
-
Rupert P.B., et al. A new DNA-binding motif in the Skn-1 binding domain-DNA complex. Nat. Struct. Biol. 5 (1998) 484-491
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 484-491
-
-
Rupert, P.B.1
-
26
-
-
0032913571
-
The SKN-1 amino-terminal arm is a DNA specificity segment
-
Kophengnavong T., et al. The SKN-1 amino-terminal arm is a DNA specificity segment. Mol. Cell. Biol. 19 (1999) 3039-3050
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 3039-3050
-
-
Kophengnavong, T.1
-
27
-
-
0026560372
-
Participation of non-zinc finger residues in DNA binding by two nuclear orphan receptors
-
Wilson T.E., et al. Participation of non-zinc finger residues in DNA binding by two nuclear orphan receptors. Science 256 (1992) 107-110
-
(1992)
Science
, vol.256
, pp. 107-110
-
-
Wilson, T.E.1
-
28
-
-
0032964122
-
DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B
-
Meinke G., and Sigler P.B. DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B. Nat. Struct. Biol. 6 (1999) 471-477
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 471-477
-
-
Meinke, G.1
Sigler, P.B.2
-
29
-
-
0037418634
-
Monomeric complex of human orphan estrogen related receptor-2 with DNA: a pseudo-dimer interface mediates extended half-site recognition
-
Gearhart M.D., et al. Monomeric complex of human orphan estrogen related receptor-2 with DNA: a pseudo-dimer interface mediates extended half-site recognition. J. Mol. Biol. 327 (2003) 819-832
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 819-832
-
-
Gearhart, M.D.1
-
30
-
-
0032059865
-
Structural elements of an orphan nuclear receptor-DNA complex
-
Zhao Q., et al. Structural elements of an orphan nuclear receptor-DNA complex. Mol. Cell 1 (1998) 849-861
-
(1998)
Mol. Cell
, vol.1
, pp. 849-861
-
-
Zhao, Q.1
-
31
-
-
0017673537
-
Direct measurement of association constants for the binding of Escherichia coli lac repressor to non-operator DNA
-
Revzin A., and von Hippel P.H. Direct measurement of association constants for the binding of Escherichia coli lac repressor to non-operator DNA. Biochemistry 16 (1977) 4769-4776
-
(1977)
Biochemistry
, vol.16
, pp. 4769-4776
-
-
Revzin, A.1
von Hippel, P.H.2
-
32
-
-
0017701075
-
Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release
-
DeHaseth P.L., et al. Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release. Biochemistry 16 (1977) 4783-4790
-
(1977)
Biochemistry
, vol.16
, pp. 4783-4790
-
-
DeHaseth, P.L.1
-
33
-
-
0026718999
-
Mapping functional specificity in the Dfd and Ubx homeo domains
-
Lin L., and McGinnis W. Mapping functional specificity in the Dfd and Ubx homeo domains. Genes Dev. 6 (1992) 1071-1081
-
(1992)
Genes Dev.
, vol.6
, pp. 1071-1081
-
-
Lin, L.1
McGinnis, W.2
-
34
-
-
0027288479
-
Ectopic expression and function of the Antp and Scr homeotic genes: the N terminus of the homeodomain is critical to functional specificity
-
Zeng W., et al. Ectopic expression and function of the Antp and Scr homeotic genes: the N terminus of the homeodomain is critical to functional specificity. Development 118 (1993) 339-352
-
(1993)
Development
, vol.118
, pp. 339-352
-
-
Zeng, W.1
-
35
-
-
0030046809
-
Intercalation, DNA kinking, and the control of transcription
-
Werner M.H., et al. Intercalation, DNA kinking, and the control of transcription. Science 271 (1996) 778-784
-
(1996)
Science
, vol.271
, pp. 778-784
-
-
Werner, M.H.1
-
36
-
-
0033544727
-
The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-5
-
Privalov P.L., et al. The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-5. J. Mol. Biol. 294 (1999) 997-1013
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 997-1013
-
-
Privalov, P.L.1
|